Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq15293 122 2e-22
seq9764 120 5e-22
seq10177 105 1e-17
seq9895 84.2 4e-11
seq9873 84.2 4e-11
>seq15293
Length=768699
Score = 122 bits (134), Expect = 2e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902
|| ||||||||||| | ||| | || | |||| ||||| |||||| || || ||
Sbjct 125702 CCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGAC 125761
Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962
|||| ||| | || |||| ||||| || || ||||| | ||| ||||| || || ||
Sbjct 125762 AAAGTCCGTCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGA 125821
Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022
|| |||||||||||||| ||||| ||| || || || || || |||| ||| ||
Sbjct 125822 ATGCCTTCTTTATCTTGAATTTTCGCTTTCACGTTCTCGATCGTGTCAGACGCTTCGACC 125881
Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| | || || ||||||||||| | || || | ||| ||||||||
Sbjct 125882 TCCAATGTGATAGTTTTACCAGTGAGAGTCTTGACGAAAATCTGCAT 125928
Score = 118 bits (130), Expect = 2e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | ||||| || || ||||| | |||| || || ||| ||||||||
Sbjct 125927 ATACCACCGCGAAGTCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCA 125986
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | | || |||| || | ||||| || ||||| || |||||||| || || ||
Sbjct 125987 GAAAGCGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGA 126046
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||||||||| || || |||||| ||| || || || || || || | |||
Sbjct 126047 GGGATTCCTTCTTTGTCCTGAATTTTAGCTTTCACGTTTTCAATCGTGTCCGATGCTTCG 126106
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| ||||| || ||||| || || | |||||| | || || |||||
Sbjct 126107 ACTTCCAGAGTGATTGTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCAT 126156
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | | || | || ||||| || |||| || || || || || ||
Sbjct 126155 ATACCACCACGTAAACGGAGAACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCA 126214
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | | || |||| || | ||||| || || |||||||||||||| || || ||
Sbjct 126215 GAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGA 126274
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| ||||||||||| ||||| |||||| ||| || || || || || || | ||
Sbjct 126275 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCA 126334
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| ||||| || ||||| || || | ||||| | || || |||||
Sbjct 126335 ACTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126384
Score = 95.1 bits (104), Expect = 2e-14
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972
|||| || | ||||| || || |||||||||||||| || || || || ||||||||||
Sbjct 126456 CGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTT 126515
Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032
| ||||| |||||| ||| || || || || || || | || ||||| ||||| |
Sbjct 126516 TGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGA 126575
Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
| ||||| || || | ||||| | || || |||||
Sbjct 126576 TTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126612
Score = 95.1 bits (104), Expect = 2e-14
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972
|||| || | ||||| || || |||||||||||||| || || || || ||||||||||
Sbjct 126684 CGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTT 126743
Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032
| ||||| |||||| ||| || || || || || || | || ||||| ||||| |
Sbjct 126744 TGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGA 126803
Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
| ||||| || || | ||||| | || || |||||
Sbjct 126804 TTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126840
Score = 91.5 bits (100), Expect = 3e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 171913 CGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTT 171972
|||| || | ||||| || || |||||||||||||| || || || || |||||||| |
Sbjct 126912 CGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCCT 126971
Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032
| ||||| ||||| ||| ||||| || |||||||| | || ||||| | || |
Sbjct 126972 TGTCTTGAATTTTTGCTTTGACATTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGA 127031
Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
| ||||| || || | ||||| | || || ||||||
Sbjct 127032 TAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCATT 127069
>seq9764
Length=1320143
Score = 120 bits (132), Expect = 5e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901
||| || | ||||||||| ||||| || | || | ||||| || || ||||| ||
Sbjct 201242 ACCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGA 201183
Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961
| || || |||| |||| ||| || ||||| || ||||| | ||||| || || ||
Sbjct 201182 AAGAGTTCTGCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGG 201123
Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021
||||| ||||| || || ||||| ||||| || || || ||||| | ||| ||
Sbjct 201122 GATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGAC 201063
Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
||| || || |||||||||||||| | ||||| | ||| || ||||||
Sbjct 201062 TTCGAGGGTGATGGTTTTACCAGTAAGAGTTTTCACGAAAATTTGCATT 201014
Score = 113 bits (124), Expect = 8e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| || |||| ||| || | || | ||| | || | ||||| ||| || |||||
Sbjct 199876 ATTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCG 199817
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | | || |||| ||||| || |||||||| || || || | ||||| |||||
Sbjct 199816 GAGAGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGA 199757
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||||||||| || || ||| ||||| ||||||||| || | |||
Sbjct 199756 GGAATGCCTTCTTTATCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCC 199697
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| |||| || |||||||| ||||| | ||||| | || || |||||
Sbjct 199696 ACCTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647
Score = 111 bits (122), Expect = 3e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| || |||| ||| || | || | ||| | || | ||||| ||| || |||||
Sbjct 200104 ATTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCG 200045
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | | || |||| |||| || || ||||| || || || | ||||| |||||
Sbjct 200044 GAGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGA 199985
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||||||||| || || ||| || || ||| ||||| || | |||
Sbjct 199984 GGAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCA 199925
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| || || |||||||| ||||| | ||||| | ||| |||||||||
Sbjct 199924 ACTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 199874
Score = 111 bits (122), Expect = 3e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| || |||| ||| || | || | ||| | || | ||||| ||| || |||||
Sbjct 200788 ATTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCG 200729
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | | || |||| |||| || || ||||| || || || | ||||| |||||
Sbjct 200728 GAGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGA 200669
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||||||||| || || ||| || || ||| ||||| || | |||
Sbjct 200668 GGAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCA 200609
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| || || |||||||| ||||| | ||||| | ||| |||||||||
Sbjct 200608 ACTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 200558
>seq10177
Length=3058365
Score = 105 bits (116), Expect = 1e-17
Identities = 133/183 (73%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946
|||||| ||||| || | || ||| | || |||| ||||| ||||| || || | ||
Sbjct 2346120 AATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGATGAGTCG 2346179
Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006
|||||| || ||||| |||||||| || || || || || || ||||| || ||
Sbjct 2346180 CTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGT 2346239
Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066
||| || | ||||| || || || ||||||||||| || | ||||| | ||| |||||
Sbjct 2346240 ATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGAAAATCTG 2346299
Query 172067 CAT 172069
|||
Sbjct 2346300 CAT 2346302
>seq9895
Length=179237
Score = 84.2 bits (92), Expect = 4e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 171828 TTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAA 171887
||| ||||| | ||| |||| | || | || || |||||||||| || ||
Sbjct 34850 TTTCGTTTCTTGGCACCGCCTCGCAAACGCAGCACCAAGTGTAAAGTAGATTCCTTCTGG 34909
Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947
|| ||||| ||||| |||| | | || |||||||||||||||||||| || |||||
Sbjct 34910 ATGTTATAGTCTGACAAAGTCCTGCCATCTTCCAATTGTTTACCAGCAAAGATCAATCTT 34969
Query 171948 TGTTGGTCAGGTGGTATTCCT 171968
|||||||| ||||| || |||
Sbjct 34970 TGTTGGTCTGGTGGAATGCCT 34990
>seq9873
Length=3435365
Score = 84.2 bits (92), Expect = 4e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 39148 CTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 39207
|||| || | || |||| |||||| || || || | |||||||| | ||||| ||||
Sbjct 2563139 CTTCATCTCGCGAGATAAGTTCATTGCTGAAGGTGAGACCTGGCATAATTCCTCGTTTTT 2563080
Query 39208 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATG 39267
| ||||||||||| | ||||||||||| ||||| ||||| || ||| |||||| |
Sbjct 2563079 TCAGCCAAAATATAGCTGCAAAACTACCGCTGAAGAAAATACCTTCGACAGCCGCAAACG 2563020
Query 39268 C 39268
|
Sbjct 2563019 C 2563019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904961998918200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |