Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq15037 113 1e-19
seq11804 105 2e-17
seq14954 93.3 1e-13
seq10286 87.8 5e-12
>seq15037
Length=1530975
Score = 113 bits (124), Expect = 1e-19
Identities = 171/242 (71%), Gaps = 6/242 (2%)
Strand=Plus/Plus
Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149
||||| ||||| ||||| || || ||||||| ||||| ||||||||| | |
Sbjct 853723 AATAAATCTCTAACACGTCGGGCACCCTGACCAACGAGGATTTCATCAAATTCAGGACCT 853782
Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209
| || || | ||||| |||| ||||| || || ||||| | ||| | | ||||||
Sbjct 853783 GCCACATGGAAGAATGGTACACCGGCTTCTCCAGCAACTGCACGCGCTAACAATGTCTTT 853842
Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA---GCAGAC 289266
|||||||| || || || | || | |||||||| || | ||| | ||| |||||
Sbjct 853843 CCTGTTCCTGGCGGGCCGACCAACAATACTCCCTTCGGCAACTTTCCACCAAGAGCAGA- 853901
Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326
| |||| |||||| |||||||||||||||| | | | ||| || | |||||||||
Sbjct 853902 --AAATTTGTCAGGGTTCTTTAAAAATTCTACTACATTCAAAAGCTCTTGCTTTGCCTCA 853959
Query 289327 TC 289328
||
Sbjct 853960 TC 853961
Score = 102 bits (112), Expect = 2e-16
Identities = 150/208 (72%), Gaps = 6/208 (3%)
Strand=Plus/Minus
Query 60142 TGTGAAAATATACCTCTCGGAT--GCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAAT 60199
||||||||| || ||||||| || | ||||| ||||| ||| | || || |||
Sbjct 1039597 TGTGAAAATGTA--TCTCGGACTGGCGGAATCCTTTCCACCAGCAAGTCTTGTACCGAAT 1039540
Query 60200 TGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCA 60259
|| ||| | ||||| | |||||||||||||| ||||||||||| || |||||| |
Sbjct 1039539 TGACCGATGGGCTGTAGCAGATTAATGTTGTTGCTACCTACGAAATTCTGCGCGAGATTA 1039480
Query 60260 ACAATAG-CACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATA 60318
|| || | | ||| | | | |||||||||||||| |||||||||| | ||| |
Sbjct 1039479 ACTATGGTCGCCA-TCAGGGACGTCTCACCGTGATGATAAGCAGAATGTTCGGCGACAGA 1039421
Query 60319 TCCACTGAATTGTGCGACTTTAATTTCG 60346
||| ||||| |||||||| | ||||
Sbjct 1039420 TCCTGCCAATTGCGCGACTTTCACTTCG 1039393
>seq11804
Length=2961632
Score = 105 bits (116), Expect = 2e-17
Identities = 192/281 (68%), Gaps = 0/281 (0%)
Strand=Plus/Plus
Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597
||| | |||||| ||||||| | ||| | ||||||| ||| || ||||||||
Sbjct 1773367 ATTACGTACGGTACCATCATAATGCACCATCACTGATTCCATAGCCTTTATCAAACGACG 1773426
Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657
|||||| |||||||| || || || || || ||||| || ||||| ||||||| ||
Sbjct 1773427 CTGAATGTAACCAGTCTCAGCCGTCTTCACGGCGGTATCGATAAGACCTTCACGACCGCC 1773486
Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717
||| || || ||| | | ||| ||| || || | | | | || |||| || ||
Sbjct 1773487 CATTGCGTGAAAGTAGAATTCTGAAGGTGTGAGACCAGCGAGATACGAATTCTCGACAAA 1773546
Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777
|||||| | || || || ||| |||| | || |||||||| || || || |
Sbjct 1773547 ACCACGAGATTCTGGTCCATAGTCATCCTTGATGAAATGTGGCAGCGTTCTCTTACGGAA 1773606
Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818
|| | || || ||||| || |||||||| ||||| ||||
Sbjct 1773607 ACCAAAGGGTATCCGCTTACCTTCAACGTTTTGCTGACCCA 1773647
Score = 96.9 bits (106), Expect = 1e-14
Identities = 127/172 (74%), Gaps = 13/172 (8%)
Strand=Plus/Plus
Query 303628 TGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTCC 303687
|| || | |||||||||||| ||||| || |||||||||||||| ||||| |||| |
Sbjct 1774490 TGTGGAACATGTAAATTCATTTCATCCCCATCAAAATCAGCATTGTACGGTGATGTG-CA 1774548
Query 303688 GC-AACGTTCATCCGGAAAGTATCACCCT----GCATCATAACACGGGCTTTATGACACA 303742
|| | ||||| ||||| || | || | ||| | ||||||| ||||| ||
Sbjct 1774549 GCTCAGATTCATGCGGAATGT-GCTCCATGGAAGCACCTTAACACG------ATGACCCA 1774601
Query 303743 TCATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCACGGGGTCACC 303794
||||| |||| |||||||||| ||||||||||| || | |||| | || ||
Sbjct 1774602 TCATACTCATTTTGTGTAGAGTGGGCTGACGATTAAAGATCACGAGATCGCC 1774653
>seq14954
Length=1990852
Score = 93.3 bits (102), Expect = 1e-13
Identities = 139/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904
|||||||||||| |||||||| || ||||| || || ||||||||| | || || ||
Sbjct 505348 ATAGTCATACGAGAAGGAATAGCGTGAGGATTAATAATAATGTCGGGTGTAAGACCTTCG 505289
Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCGTG 251963
|| ||| ||||| || | || | | || || ||||| || ||||||||||||||
Sbjct 505288 CAAGAGAACGGCATGTCTTCTTGC-CTGTACTGAATTCCACATGTACCCTTTTGTCCGTG 505230
Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023
||| ||| || || ||||| || ||| ||| ||||| || | |||| ||| ||
Sbjct 505229 ACGCGAAGCAAATTTGTCACCGATTTGCGGAATGCGTACACTGCGCACTCGAATCTTGCA 505170
Query 252024 GAAGTTGTAACCATC 252038
|| || || || ||
Sbjct 505169 AAATTTATATCCTTC 505155
>seq10286
Length=650159
Score = 87.8 bits (96), Expect = 5e-12
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 106924 CATACCATAGAAAAACTTGAACTTTTTACCATCTTCCTCAATTAACTTACCTGGATTTTC 106983
||| ||||| |||| ||||||||| || |||| | || || | | || | |||
Sbjct 11930 CATCCCATAAAAAAGCTTGAACTTCTTTCCATTCTTTTCTATAATTTCGCCCCCACATTC 11871
Query 106984 ATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATCAGCCCCGCCACCGAATGCTTT 107043
|||||| ||||| || | ||||| |||| ||||| || || || ||||||||||||||
Sbjct 11870 ATCGTGACCCGCGAATATCCCGCCTGCCATGACGAAGTCCGCGCCACCACCGAATGCTTT 11811
Query 107044 AGCCATATCACCAGGGCAAGTAATTCCACCATC 107076
|| | ||| ||||| || ||| ||||| ||
Sbjct 11810 CGCTAAATCTCCAGGACAGGTACACCCACCGTC 11778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471527588000723
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |