Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq15037 113 1e-19 seq11804 105 2e-17 seq14954 93.3 1e-13 seq10286 87.8 5e-12 >seq15037 Length=1530975 Score = 113 bits (124), Expect = 1e-19 Identities = 171/242 (71%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| ||||| ||||| || || ||||||| ||||| ||||||||| | | Sbjct 853723 AATAAATCTCTAACACGTCGGGCACCCTGACCAACGAGGATTTCATCAAATTCAGGACCT 853782 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 | || || | ||||| |||| ||||| || || ||||| | ||| | | |||||| Sbjct 853783 GCCACATGGAAGAATGGTACACCGGCTTCTCCAGCAACTGCACGCGCTAACAATGTCTTT 853842 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA---GCAGAC 289266 |||||||| || || || | || | |||||||| || | ||| | ||| ||||| Sbjct 853843 CCTGTTCCTGGCGGGCCGACCAACAATACTCCCTTCGGCAACTTTCCACCAAGAGCAGA- 853901 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | |||| |||||| |||||||||||||||| | | | ||| || | ||||||||| Sbjct 853902 --AAATTTGTCAGGGTTCTTTAAAAATTCTACTACATTCAAAAGCTCTTGCTTTGCCTCA 853959 Query 289327 TC 289328 || Sbjct 853960 TC 853961 Score = 102 bits (112), Expect = 2e-16 Identities = 150/208 (72%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 60142 TGTGAAAATATACCTCTCGGAT--GCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAAT 60199 ||||||||| || ||||||| || | ||||| ||||| ||| | || || ||| Sbjct 1039597 TGTGAAAATGTA--TCTCGGACTGGCGGAATCCTTTCCACCAGCAAGTCTTGTACCGAAT 1039540 Query 60200 TGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCA 60259 || ||| | ||||| | |||||||||||||| ||||||||||| || |||||| | Sbjct 1039539 TGACCGATGGGCTGTAGCAGATTAATGTTGTTGCTACCTACGAAATTCTGCGCGAGATTA 1039480 Query 60260 ACAATAG-CACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATA 60318 || || | | ||| | | | |||||||||||||| |||||||||| | ||| | Sbjct 1039479 ACTATGGTCGCCA-TCAGGGACGTCTCACCGTGATGATAAGCAGAATGTTCGGCGACAGA 1039421 Query 60319 TCCACTGAATTGTGCGACTTTAATTTCG 60346 ||| ||||| |||||||| | |||| Sbjct 1039420 TCCTGCCAATTGCGCGACTTTCACTTCG 1039393 >seq11804 Length=2961632 Score = 105 bits (116), Expect = 2e-17 Identities = 192/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||| | |||||| ||||||| | ||| | ||||||| ||| || |||||||| Sbjct 1773367 ATTACGTACGGTACCATCATAATGCACCATCACTGATTCCATAGCCTTTATCAAACGACG 1773426 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 |||||| |||||||| || || || || || ||||| || ||||| ||||||| || Sbjct 1773427 CTGAATGTAACCAGTCTCAGCCGTCTTCACGGCGGTATCGATAAGACCTTCACGACCGCC 1773486 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||| || || ||| | | ||| ||| || || | | | | || |||| || || Sbjct 1773487 CATTGCGTGAAAGTAGAATTCTGAAGGTGTGAGACCAGCGAGATACGAATTCTCGACAAA 1773546 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 |||||| | || || || ||| |||| | || |||||||| || || || | Sbjct 1773547 ACCACGAGATTCTGGTCCATAGTCATCCTTGATGAAATGTGGCAGCGTTCTCTTACGGAA 1773606 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818 || | || || ||||| || |||||||| ||||| |||| Sbjct 1773607 ACCAAAGGGTATCCGCTTACCTTCAACGTTTTGCTGACCCA 1773647 Score = 96.9 bits (106), Expect = 1e-14 Identities = 127/172 (74%), Gaps = 13/172 (8%) Strand=Plus/Plus Query 303628 TGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTCC 303687 || || | |||||||||||| ||||| || |||||||||||||| ||||| |||| | Sbjct 1774490 TGTGGAACATGTAAATTCATTTCATCCCCATCAAAATCAGCATTGTACGGTGATGTG-CA 1774548 Query 303688 GC-AACGTTCATCCGGAAAGTATCACCCT----GCATCATAACACGGGCTTTATGACACA 303742 || | ||||| ||||| || | || | ||| | ||||||| ||||| || Sbjct 1774549 GCTCAGATTCATGCGGAATGT-GCTCCATGGAAGCACCTTAACACG------ATGACCCA 1774601 Query 303743 TCATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCACGGGGTCACC 303794 ||||| |||| |||||||||| ||||||||||| || | |||| | || || Sbjct 1774602 TCATACTCATTTTGTGTAGAGTGGGCTGACGATTAAAGATCACGAGATCGCC 1774653 >seq14954 Length=1990852 Score = 93.3 bits (102), Expect = 1e-13 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 |||||||||||| |||||||| || ||||| || || ||||||||| | || || || Sbjct 505348 ATAGTCATACGAGAAGGAATAGCGTGAGGATTAATAATAATGTCGGGTGTAAGACCTTCG 505289 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCGTG 251963 || ||| ||||| || | || | | || || ||||| || |||||||||||||| Sbjct 505288 CAAGAGAACGGCATGTCTTCTTGC-CTGTACTGAATTCCACATGTACCCTTTTGTCCGTG 505230 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023 ||| ||| || || ||||| || ||| ||| ||||| || | |||| ||| || Sbjct 505229 ACGCGAAGCAAATTTGTCACCGATTTGCGGAATGCGTACACTGCGCACTCGAATCTTGCA 505170 Query 252024 GAAGTTGTAACCATC 252038 || || || || || Sbjct 505169 AAATTTATATCCTTC 505155 >seq10286 Length=650159 Score = 87.8 bits (96), Expect = 5e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 106924 CATACCATAGAAAAACTTGAACTTTTTACCATCTTCCTCAATTAACTTACCTGGATTTTC 106983 ||| ||||| |||| ||||||||| || |||| | || || | | || | ||| Sbjct 11930 CATCCCATAAAAAAGCTTGAACTTCTTTCCATTCTTTTCTATAATTTCGCCCCCACATTC 11871 Query 106984 ATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATCAGCCCCGCCACCGAATGCTTT 107043 |||||| ||||| || | ||||| |||| ||||| || || || |||||||||||||| Sbjct 11870 ATCGTGACCCGCGAATATCCCGCCTGCCATGACGAAGTCCGCGCCACCACCGAATGCTTT 11811 Query 107044 AGCCATATCACCAGGGCAAGTAATTCCACCATC 107076 || | ||| ||||| || ||| ||||| || Sbjct 11810 CGCTAAATCTCCAGGACAGGTACACCCACCGTC 11778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471527588000723