Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq9873 215 4e-51 seq15293 105 6e-18 seq9764 105 6e-18 seq10177 82.4 6e-11 >seq9873 Length=3435365 Score = 215 bits (238), Expect = 4e-51 Identities = 317/445 (71%), Gaps = 8/445 (2%) Strand=Plus/Minus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGT--AGCGTGCCGTGA 34260 |||||| ||||||| ||| | ||||| | ||| || | | | | || || ||| Sbjct 2554441 CGGCGGATTTTTCAAAATGTATGTGTTCAACTTGTG--ATTACTCTCAAGAAGACCATGA 2554384 Query 34261 TAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGAC--ACGATGAGCT 34318 | || ||||||||||| ||||| | || || ||| || || || || || | | Sbjct 2554383 TGTCCACATGCTTTGCAACCCTGTGAAATCGTGCCCTTCTT--CGAACTGACCATTAATT 2554326 Query 34319 CAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCA 34378 | || |||||||| || || |||| || | ||| | || |||||||||||||| |||| Sbjct 2554325 CGGTTTCCGGGTTATCGCAGGCCGGGCAAAGAACATATTTTCGGATGAAACCATCCAGCA 2554266 Query 34379 GGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAAT 34438 | || |||| ||| | ||||| ||||||||||| ||||| |||||||| ||| | | Sbjct 2554265 GATCTTGTAGCTTTGTCGCATCGTGCGAGCCGTTGACAATGAAGCGTTCGTTCTTGAAGT 2554206 Query 34439 CGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGAC 34498 | | ||| || || ||||||| |||||| ||||| ||||| ||||| || | || |||| Sbjct 2554205 CAAACTGTGTCTGAGCGCCCAACTCGCAACCGAAATACTTGGTCGGATATGTAGCAGGAC 2554146 Query 34499 GTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCT 34558 | || | ||| || || | || ||| |||||||| || ||||| || || || |||| Sbjct 2554145 GACCGATCGCTTTCGCCACATCCACCATATTGACGATCACTGTCTTAATACCATTTCCCT 2554086 Query 34559 TTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACAT 34618 | ||||| || || || ||| |||||||| || || || || || || || |||| Sbjct 2554085 TGCCTTCCACTTTCGCCTGGATCCGCGGCATCTTATAACGATAAAAAGCATCGCTGACAT 2554026 Query 34619 TGCGGTTAACGTTCACAGTCCCCAT 34643 |||| || ||||| | ||||||| Sbjct 2554025 TGCGATTGACGTTTAAGCTCCCCAT 2554001 >seq15293 Length=768699 Score = 105 bits (116), Expect = 6e-18 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGC--CT 110329 ||||| || || ||||| ||| | || || ||||| || || | || || ||| || Sbjct 125928 ATGCAGATTTTCGTCAAGACTCTCACTGGTAAAACTATCACATTGGAGGTCGAAGCGTCT 125869 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | || ||| ||| ||| || ||||||||| | || ||| Sbjct 125868 GAC---ACGATCGAGAACGTGAAAGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGAT 125812 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||||||||| |||| ||||| |||||||||||||||| | || || | || ||| Sbjct 125811 CAACAAAGACTGATTTTCGCGGGCAAACAGCTGGAGGATGGACGGACTTTGTCCGACTAC 125752 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAA 110502 || ||||||||||||||||| | ||| | || | |||| |||| ||||| Sbjct 125751 AATATTCAAAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGGCGGAAA 125699 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 |||||||| ||||||||||| | ||||||||||| || || | ||| || ||| | Sbjct 126156 ATGCAAATTTTTGTCAAAACACTCACCGGCAAAACAATCACTCTGGAAGTCGAAGCATCG 126097 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | || ||| || ||| ||||||||||| | || ||||| Sbjct 126096 -GACACGATTGAAAACGTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCAGATCA 126038 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || ||| | || | ||| || |||||||| || || | | | || | | ||||| || Sbjct 126037 GCAGAGATTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACGCTTTCTGATTATAA 125978 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| || |||||||| |||| |||| || ||||| || || || Sbjct 125977 CATTCAGAAGGAATCTACCCTGCATTTGGTTTTGAGACTTCGCGGTGG 125930 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||||||||| | ||||||||||| || || | ||| ||| | | Sbjct 126384 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126325 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| || ||| ||||||||||| | || ||||| Sbjct 126324 GACACGATTGAAAACGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 126265 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | |||| || || |||||||| || || | | | ||| | | || |||||| Sbjct 126264 CAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAAC 126205 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || || |||||||| ||||| |||| Sbjct 126204 ATCCAGAAGGAATCTACATTGCATTTGGT 126176 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||||||||| | ||||||||||| || || | ||| ||| | | Sbjct 126612 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126553 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| || ||| ||||||||||| | || ||||| Sbjct 126552 GACACGATTGAAAACGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 126493 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | |||| || || |||||||| || || | | | ||| | | || |||||| Sbjct 126492 CAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAAC 126433 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || || ||||| || ||||| |||| Sbjct 126432 ATCCAGAAGGAATCGACATTGCATTTGGT 126404 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||||||||| | ||||||||||| || || | ||| ||| | | Sbjct 126840 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126781 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| || ||| ||||||||||| | || ||||| Sbjct 126780 GACACGATTGAAAACGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 126721 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | |||| || || |||||||| || || | | | ||| | | || |||||| Sbjct 126720 CAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAAC 126661 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || || ||||| || ||||| |||| Sbjct 126660 ATCCAGAAGGAATCGACATTGCATTTGGT 126632 >seq9764 Length=1320143 Score = 105 bits (116), Expect = 6e-18 Identities = 166/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 110264 AGATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACG 110323 ||||| | |||||||| ||||| |||||| | || || |||||||| ||| | || | Sbjct 199638 AGATTCATCATGCAAATCTTTGTGAAAACTCTTACTGGGAAAACCATCACCTTAGAGGTG 199697 Query 110324 GAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCC 110383 || || |||||| | | | || ||| ||||| || ||||||||| | || Sbjct 199698 GAAGCTTCTGATACTATAGAGAATGTCAAAGCCAAGATCCAAGATAAAGAAGGCATTCCT 199757 Query 110384 GTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCG 110443 ||||||||| | | || | || ||||| ||| |||| || | |||||| | | Sbjct 199758 CCTGATCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACACTCTCC 199817 Query 110444 GATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||||||||||||||||| || | || |||| | | || ||||| |||| Sbjct 199818 GATTACAACATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGAA 199875 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA-GCCTG 110330 ||||||||| ||||| |||||| | || || |||||||| ||| ||||| || |||| Sbjct 200330 AATGCAAATCTTTGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200389 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||||| | | | || || ||||| |||||||||||| | || |||| Sbjct 200390 T-GATACAATAGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATC 200448 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 ||||| | | || | || || || |||||||| || | |||||| | | ||||||| Sbjct 200449 AACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACA 200508 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||||||| || | || |||| | | || ||||| |||| Sbjct 200509 ACATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGAA 200559 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 ||||||||| || || |||||| | || || |||||||| ||| ||||| || ||| | Sbjct 201014 AATGCAAATTTTCGTGAAAACTCTTACTGGTAAAACCATCACCCTCGAAGTCGAAGCTTC 201073 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || | | | ||||| || ||| |||||||| || | || |||| Sbjct 201074 A-GACACCATTGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATCCCTCCAGATC 201132 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 ||||| | | || | || || || || ||||| || | |||||| | | ||||||| Sbjct 201133 AACAACGTTTAATCTTCGCTGGCAAGCAACTGGAAGACGGCAGAACTCTTTCTGATTACA 201192 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||| ||||||||||| || | ||| | || ||| |||| || || || Sbjct 201193 ACATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGG 201241 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA-GCCTG 110330 |||||| || || || |||||| | || || |||||||| ||| | ||| || |||| Sbjct 199874 AATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTC 199933 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||||| | | | || ||| ||||| || ||||||||| | || |||| Sbjct 199934 T-GATACAATAGAAAACGTGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATC 199992 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 ||||| | | || | || || || |||||||| || | |||||| | | ||||||| Sbjct 199993 AACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACA 200052 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||||||| || | || |||| | | || ||||| |||| Sbjct 200053 ACATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGAA 200103 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA-GCCTG 110330 |||||| || || || |||||| | || || |||||||| ||| | ||| || |||| Sbjct 200558 AATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTC 200617 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||||| | | | || ||| ||||| || ||||||||| | || |||| Sbjct 200618 T-GATACAATAGAAAACGTGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATC 200676 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 ||||| | | || | || || || |||||||| || | |||||| | | ||||||| Sbjct 200677 AACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACA 200736 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||||||| || | || |||| | | || ||||| |||| Sbjct 200737 ACATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGAA 200787 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA-GCCTG 110330 |||||| || || || |||||| | || || |||||||| ||| ||||| || |||| Sbjct 200786 AATGCAGATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200845 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 || || | | | ||||| ||||| |||||||||||| | || |||| Sbjct 200846 T-GACACAATAGAAAACGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATC 200904 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 ||||| | | || | || || || ||| |||| || | || ||| | | || |||| Sbjct 200905 AACAACGTTTGATCTTCGCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCAGACTACA 200964 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 | ||||| ||||||||||| | ||| |||| ||| | || ||||| |||| Sbjct 200965 ATATTCAGAAAGAATCTACTCTTCACTTGGTTTTACGTCTTCGAGGAGGAA 201015 >seq10177 Length=3058365 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||| | || || |||||||| ||| |||| ||| || | Sbjct 2346302 ATGCAGATTTTCGTGAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTAGAGGCTTCC 2346243 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || || ||||| ||||| ||||| | || |||||| Sbjct 2346242 GATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAA 2346183 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||| || | || || |||||||||||||||| | || || | |||||||| Sbjct 2346182 CAGCGACTCATCTTCGCTGGCAAACAGCTGGAGGATGGACGTACTCTGTCCGATTACAAT 2346123 Query 110453 ATTCAAAAAG 110462 |||||||||| Sbjct 2346122 ATTCAAAAAG 2346113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412764220453847