Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq14986 93.3 7e-13 seq11709 87.8 3e-11 >seq14986 Length=1518687 Score = 93.3 bits (102), Expect = 7e-13 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| || || || ||| |||||| | |||| ||| ||| | | Sbjct 529633 TGTACTTGGTGACTGCCTTTGTGCCTTCGCTGACAGCGTGCTTCGCCAATTCTCCGGGAA 529692 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | |||||| || || ||||| || | ||||||| || ||||| Sbjct 529693 GAAGGAGCCTCACGGCAGTTTGAATCTCCCGAGACGTGATCGTGGAACGTTTGTTGTAAT 529752 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || ||||||| ||||||| |||| | ||||| || || |||| Sbjct 529753 GAGCCAGACGAGACGCCTCGGCTGCGATGCGTTCGAAAACATCGTTCACGAAGCTATTCA 529812 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||||| || ||||||| || |||||| || || || || | |||||||| Sbjct 529813 TAATACTCATCGCCTTACTGGAGATTCCGGTGTCGGGATGGACTTGTTTCAACACCTTGT 529872 Query 1485710 A 1485710 | Sbjct 529873 A 529873 >seq11709 Length=2490500 Score = 87.8 bits (96), Expect = 3e-11 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| |||||||| || || || |||||| | |||||||| || ||| Sbjct 689239 TGTATTTGGTGACAGCCTTGGTGCCTTCACTCACAGCGTGCTTCGCCAGTTCTCCAGGCA 689298 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | || || || |||||||| || | | |||||| ||| ||||| Sbjct 689299 GCAAAAGTCTAACAGCAGTTTGGATCTCCCGAGAGGTGATCGTCGAGCGTTTGTTGTAAT 689358 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || || || | |||| || |||| | ||||||||||| ||||||| Sbjct 689359 GTGCCAAACGCGATGCTTCAGCAGCGATACGCTCGAAAACATCGTTGACAAATGAGTTCA 689418 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||| | |||| | ||||| || ||| || || || ||||| || || || | Sbjct 689419 TTATACTCATAGCTTTGCTCGAGATTCCAGTGTCAGGATGAACTTGCTTCAGTACTTTAT 689478 Query 1485710 A 1485710 | Sbjct 689479 A 689479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914610465626381