Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq15293 111 1e-19 seq9764 98.7 6e-16 seq10177 82.4 5e-11 >seq15293 Length=768699 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || ||||||||||| || || || | || | || || |||||||||||||||||| Sbjct 127106 TCTTTTTGAATGTTATAATCAGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCGGCGAAG 127165 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||| || | || | || |||||||| | ||||| ||||||| | Sbjct 127166 ATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTGTCCTGAATTTTGGCTTTGACGTTT 127225 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| || ||||| || || | || || || |||||||| ||||| || ||| Sbjct 127226 TCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACA 127285 Query 34967 AAGATCTGCAT 34977 ||||| ||||| Sbjct 127286 AAGATTTGCAT 127296 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| ||||| || || |||| | || || || || ||||||||||| Sbjct 126878 TCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAA 126937 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || | || ||||| ||| | || | || |||||||| | |||||| |||||| | Sbjct 126938 ATTAATCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGAATTTTTGCTTTGACATTT 126997 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| || ||||| || || | || || || |||||||| ||||| || ||| Sbjct 126998 TCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACA 127057 Query 34967 AAGATCTGCAT 34977 ||||| ||||| Sbjct 127058 AAGATTTGCAT 127068 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || ||||||||||| || || || | || | || || |||||||||||||||||| Sbjct 127334 TCTTTTTGAATGTTATAATCAGAGAGAGTACGACCGTCTTCAAGTTGCTTTCCGGCGAAG 127393 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||| || | || | || ||||| || | || ||| ||| ||| Sbjct 127394 ATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGGATCTTTGCTTTTACGTTC 127453 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | ||| |||||||| || | ||||||||||| || || | ||||| || Sbjct 127454 TCAATGGTATCAGAAGCCTCGACTTCCAGAGTTATGGTCTTCCCGGTCAACGTCTTCACG 127513 Query 34967 AAGATCTGCATG 34978 || ||||||||| Sbjct 127514 AAAATCTGCATG 127525 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||||||||||||||| || || || |||| | || || || || |||||||| ||| Sbjct 125966 TCCTTCTGAATGTTATAATCAGAAAGCGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAG 126025 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||| ||| | || | || || ||||| | ||||| ||| ||| | Sbjct 126026 ATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCCTGAATTTTAGCTTTCACGTTT 126085 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| || || ||||| || | || || || || || ||||| || || ||| Sbjct 126086 TCAATCGTGTCCGATGCTTCGACTTCCAGAGTGATTGTTTTGCCGGTGAGTGTTTTGACA 126145 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 126146 AAAATTTGCAT 126156 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| ||||| || || |||| | || || || || ||||||||||| Sbjct 126194 TCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAA 126253 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || | || ||||| ||| | || | || || ||||| | ||||| ||| ||| | Sbjct 126254 ATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTT 126313 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| || ||||| || || | || || || || || ||||| || || ||| Sbjct 126314 TCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACA 126373 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 126374 AAAATTTGCAT 126384 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| ||||| || || |||| | || || || || ||||||||||| Sbjct 126422 TCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAA 126481 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || | || ||||| ||| | || | || || ||||| | ||||| ||| ||| | Sbjct 126482 ATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTT 126541 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| || ||||| || || | || || || || || ||||| || || ||| Sbjct 126542 TCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACA 126601 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 126602 AAAATTTGCAT 126612 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| ||||| || || |||| | || || || || ||||||||||| Sbjct 126650 TCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAA 126709 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || | || ||||| ||| | || | || || ||||| | ||||| ||| ||| | Sbjct 126710 ATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTT 126769 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| || ||||| || || | || || || || || ||||| || || ||| Sbjct 126770 TCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACA 126829 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 126830 AAAATTTGCAT 126840 >seq9764 Length=1320143 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | ||| ||||| |||| ||| || || |||||||| || || | Sbjct 200103 TTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGG 200044 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | | || ||||| ||||| || |||||||||| ||||| || || | | Sbjct 200043 AGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAG 199984 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || || || | || || ||| ||| | |||| | ||| ||| || | Sbjct 199983 GAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAA 199924 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||| ||||| || || ||||| || ||||| ||||||||||| Sbjct 199923 CTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 199875 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | ||| ||||| |||| ||| || || |||||||| || || | Sbjct 200787 TTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGG 200728 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | | || ||||| ||||| || |||||||||| ||||| || || | | Sbjct 200727 AGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAG 200668 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || || || | || || ||| ||| | |||| | ||| ||| || | Sbjct 200667 GAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAA 200608 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||| ||||| || || ||||| || ||||| ||||||||||| Sbjct 200607 CTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 200559 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | ||| |||| ||||| || || |||||||| || ||||| | Sbjct 200331 TTCCTCCTCGAAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTG 200272 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | | || |||| ||||| || |||||||||| ||||| || || | | Sbjct 200271 AGAGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAG 200212 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || ||||| | || || || ||| | |||| | ||| ||| || | Sbjct 200211 GAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAA 200152 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||| || || ||||| || || || ||||||||||| Sbjct 200151 CTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCAT 200103 >seq10177 Length=3058365 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/191 (70%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 || ||||| || || || || || | || |||| ||||| || || || |||||||| Sbjct 2346115 TTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGATG 2346174 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 ||||| || || ||| | || | || |||||||| | || || ||||| || || Sbjct 2346175 AGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCT 2346232 Query 34910 --ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 || | || ||||| || || | ||| ||||| || ||||||||||| || || | Sbjct 2346233 CGATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGA 2346292 Query 34968 AGATCTGCATG 34978 | ||||||||| Sbjct 2346293 AAATCTGCATG 2346303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325631754889601