Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq15293 102 7e-17
seq9764 89.7 4e-13
>seq15293
Length=768699
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||||||||||||||| | || |||||||| || || | ||| ||||| |
Sbjct 126384 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126325
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | || ||| || ||| || |||||||| | || ||||||
Sbjct 126324 GACACGATTGAAAACGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 126265
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|||||| | |||| || || |||||||| || |||| | ||| | | |||||||||
Sbjct 126264 CAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAAC 126205
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764
|| || ||||| ||||| ||||| ||||
Sbjct 126204 ATCCAGAAGGAATCTACATTGCATTTGGT 126176
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||||||||||||||| | || |||||||| || || | ||| ||||| |
Sbjct 126612 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126553
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | || ||| || ||| || |||||||| | || ||||||
Sbjct 126552 GACACGATTGAAAACGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 126493
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|||||| | |||| || || |||||||| || |||| | ||| | | |||||||||
Sbjct 126492 CAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAAC 126433
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764
|| || ||||| || || ||||| ||||
Sbjct 126432 ATCCAGAAGGAATCGACATTGCATTTGGT 126404
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||||||||||||||| | || |||||||| || || | ||| ||||| |
Sbjct 126840 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126781
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | || ||| || ||| || |||||||| | || ||||||
Sbjct 126780 GACACGATTGAAAACGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 126721
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|||||| | |||| || || |||||||| || |||| | ||| | | |||||||||
Sbjct 126720 CAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAAC 126661
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764
|| || ||||| || || ||||| ||||
Sbjct 126660 ATCCAGAAGGAATCGACATTGCATTTGGT 126632
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614
||||||||| ||||||||||| | || || ||||| || || | ||| |||||
Sbjct 127069 AATGCAAATCTTTGTCAAAACCCTGACGGGAAAAACTATCACGTTGGAAGTTGAGGCATC 127010
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| ||| | || ||| ||| ||| || || ||||| | || |||||
Sbjct 127009 AGATACGATCGAAAATGTCAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCA 126950
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
||||||| | |||| || || |||||||| || |||| | ||| | | ||||||||
Sbjct 126949 GCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAA 126890
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764
||| || ||||| || || ||||| ||||
Sbjct 126889 CATCCAGAAGGAATCGACATTGCATTTGGT 126860
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||||||||||||||| | || |||||||| || || | ||| || ||
Sbjct 126156 ATGCAAATTTTTGTCAAAACACTCACCGGCAAAACAATCACTCTGGAAGTCGAAGCATCG 126097
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || | | | || ||| || ||| || |||||||| | || ||||||
Sbjct 126096 GACACGATTGAAAACGTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCAGATCAG 126037
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|||||| | || | ||| || |||||||| || |||| | || | | || || |||
Sbjct 126036 CAGAGATTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACGCTTTCTGATTATAAC 125977
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782
||||| ||||| ||||| |||| |||| |||||| | || || ||
Sbjct 125976 ATTCAGAAGGAATCTACCCTGCATTTGGTTTTGAGACTTCGCGGTGG 125930
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| ||||| ||||| ||| | || || ||||| || || | || || ||
Sbjct 125928 ATGCAGATTTTCGTCAAGACTCTCACTGGTAAAACTATCACATTGGAGGTCGAAGCGTCT 125869
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | || ||| || ||| |||||||||||| | || |||||
Sbjct 125868 GACACGATCGAGAACGTGAAAGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAA 125809
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|| ||||| |||| ||||| |||||||||||||| | || || | ||||||||
Sbjct 125808 CAAAGACTGATTTTCGCGGGCAAACAGCTGGAGGATGGACGGACTTTGTCCGACTACAAT 125749
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAAT 107786
|||||||| || ||||| | ||| | || | || | |||| ||||||
Sbjct 125748 ATTCAAAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGGCGGAAAT 125698
>seq9764
Length=1320143
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
|||||||| ||||| |||||| | || || |||||||| ||| | || ||| |||
Sbjct 199647 ATGCAAATCTTTGTGAAAACTCTTACTGGGAAAACCATCACCTTAGAGGTGGAAGCTTCT 199706
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|||||| | | | || ||| ||||| |||||||||||| | || |||||
Sbjct 199707 GATACTATAGAGAATGTCAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCAA 199766
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
|| | | || | || ||||| ||| |||| |||| | |||| | | || ||||||
Sbjct 199767 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACACTCTCCGATTACAAC 199826
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784
|||||||| || || || | || |||| || | | ||||| ||||
Sbjct 199827 ATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGAA 199875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398802037898131
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |