Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq15293 102 7e-17 seq9764 89.7 4e-13 >seq15293 Length=768699 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||||||||| | || |||||||| || || | ||| ||||| | Sbjct 126384 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126325 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| || ||| || |||||||| | || |||||| Sbjct 126324 GACACGATTGAAAACGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 126265 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | |||| || || |||||||| || |||| | ||| | | ||||||||| Sbjct 126264 CAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAAC 126205 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || || ||||| ||||| ||||| |||| Sbjct 126204 ATCCAGAAGGAATCTACATTGCATTTGGT 126176 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||||||||| | || |||||||| || || | ||| ||||| | Sbjct 126612 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126553 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| || ||| || |||||||| | || |||||| Sbjct 126552 GACACGATTGAAAACGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 126493 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | |||| || || |||||||| || |||| | ||| | | ||||||||| Sbjct 126492 CAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAAC 126433 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || || ||||| || || ||||| |||| Sbjct 126432 ATCCAGAAGGAATCGACATTGCATTTGGT 126404 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||||||||| | || |||||||| || || | ||| ||||| | Sbjct 126840 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126781 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| || ||| || |||||||| | || |||||| Sbjct 126780 GACACGATTGAAAACGTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 126721 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | |||| || || |||||||| || |||| | ||| | | ||||||||| Sbjct 126720 CAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAAC 126661 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || || ||||| || || ||||| |||| Sbjct 126660 ATCCAGAAGGAATCGACATTGCATTTGGT 126632 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| ||||||||||| | || || ||||| || || | ||| ||||| Sbjct 127069 AATGCAAATCTTTGTCAAAACCCTGACGGGAAAAACTATCACGTTGGAAGTTGAGGCATC 127010 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | || ||| ||| ||| || || ||||| | || ||||| Sbjct 127009 AGATACGATCGAAAATGTCAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCA 126950 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | |||| || || |||||||| || |||| | ||| | | |||||||| Sbjct 126949 GCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAA 126890 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || ||||| || || ||||| |||| Sbjct 126889 CATCCAGAAGGAATCGACATTGCATTTGGT 126860 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||||||||| | || |||||||| || || | ||| || || Sbjct 126156 ATGCAAATTTTTGTCAAAACACTCACCGGCAAAACAATCACTCTGGAAGTCGAAGCATCG 126097 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| || ||| || |||||||| | || |||||| Sbjct 126096 GACACGATTGAAAACGTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCAGATCAG 126037 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | ||| || |||||||| || |||| | || | | || || ||| Sbjct 126036 CAGAGATTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACGCTTTCTGATTATAAC 125977 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| ||||| ||||| |||| |||| |||||| | || || || Sbjct 125976 ATTCAGAAGGAATCTACCCTGCATTTGGTTTTGAGACTTCGCGGTGG 125930 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| ||| | || || ||||| || || | || || || Sbjct 125928 ATGCAGATTTTCGTCAAGACTCTCACTGGTAAAACTATCACATTGGAGGTCGAAGCGTCT 125869 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || ||| || ||| |||||||||||| | || ||||| Sbjct 125868 GACACGATCGAGAACGTGAAAGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAA 125809 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||||| |||| ||||| |||||||||||||| | || || | |||||||| Sbjct 125808 CAAAGACTGATTTTCGCGGGCAAACAGCTGGAGGATGGACGGACTTTGTCCGACTACAAT 125749 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAAT 107786 |||||||| || ||||| | ||| | || | || | |||| |||||| Sbjct 125748 ATTCAAAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGGCGGAAAT 125698 >seq9764 Length=1320143 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| |||||| | || || |||||||| ||| | || ||| ||| Sbjct 199647 ATGCAAATCTTTGTGAAAACTCTTACTGGGAAAACCATCACCTTAGAGGTGGAAGCTTCT 199706 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || ||| ||||| |||||||||||| | || ||||| Sbjct 199707 GATACTATAGAGAATGTCAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCAA 199766 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | | || | || ||||| ||| |||| |||| | |||| | | || |||||| Sbjct 199767 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACACTCTCCGATTACAAC 199826 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||||| || || || | || |||| || | | ||||| |||| Sbjct 199827 ATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGAA 199875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398802037898131