Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq10440 190 2e-42
seq10556 132 4e-25
seq9994 123 2e-22
seq10535 111 1e-18
seq11804 93.3 3e-13
>seq10440
Length=2225863
Score = 190 bits (210), Expect = 2e-42
Identities = 674/1042 (65%), Gaps = 12/1042 (1%)
Strand=Plus/Plus
Query 281442 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 281501
||||||| || || | |||||| |||||||| ||||| || || |||| | || || |
Sbjct 2122287 TACCATTAGCGTCGATATCAAAAGTGACTTCGATTTGCGGAACACCTCGAGGCGCTGGAG 2122346
Query 281502 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 281561
| || || || | |||| | || || | |||||||| || || | || || |
Sbjct 2122347 GAATACCCGTCAGCTCAAATTTGCCGAGGATGTTATTATCCTTCGTCATCGCTCTCTCTC 2122406
Query 281562 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 281621
||||| | | || ||| ||| | | |||||| || || || || || || |||||
Sbjct 2122407 CCTCGTAGACCTGTATAAGCACTCCCGGTTGATTGTCGGAGTACGTGGTGAACG-TCTGG 2122465
Query 281622 ATTTTTTACAA-GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680
| | || | || || || ||||| || | ||| | | ||||||| || |||||
Sbjct 2122466 GTCTGTTTCGTTGGTATCGTCGTGTTCCTCTTAATCAAGGTAGTCATAACGCCGCCAGCG 2122525
Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 281740
||||| | ||| | || | ||||| || || | ||| | | || ||| | || ||
Sbjct 2122526 GTTTCAATACCCAATGACAACGGAGTCACGTCCAGTAGAAGTAGATCTTGGACTTCCTCG 2122585
Query 281741 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 281800
| | || ||||| || || |||| || |||||||| ||||| || || ||
Sbjct 2122586 GACTTGTCGCCGTGCAGAATGGCCGCCTGAACTGCCGCACCATAAGCAACGGCCTCGTCC 2122645
Query 281801 GGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACC 281860
||||| | | || ||| |||| || || || || |||| | ||| || | ||| |
Sbjct 2122646 GGATTGATGGATTTATTCAGTTCCTTGCCGTTAAAGAAATCTTGAAGTAGCT-TCTGAAT 2122704
Query 281861 TTA-GGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 281919
|| || || | | || || || |||| || || || || || | ||||||||
Sbjct 2122705 TTTTGGTATCCTGGTGGAGCCACCGACTAGAACGATGCTGTGAACTTGGGCTTTATCCAT 2122764
Query 281920 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACA 281979
|| | || | | ||||| |||||||||||| |||||||| || | ||
Sbjct 2122765 CTTCGCGTCTCTAAGCGCCTTTTCCACGGGTTCAAGAGTGCTTCTAAACAGATCGGCGCA 2122824
Query 281980 AAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAA 282037
|| || |||||| | |||||||| | | || | || || ||||| || || |||||
Sbjct 2122825 GAGCTCCTCGAATCTGGCTCTAGTTACCG--ACGTATAGAAGTCAATGCCCTCAAACAAT 2122882
Query 282038 GAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACAT 282097
||||| | ||| || | | || || || || | || | || || | || ||
Sbjct 2122883 GAATCGATTTCGATGCTCGCCTGCGTTGATGAGCTCAATGTTCTCTTCGCTCTCTCGCAA 2122942
Query 282098 GCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTATATTTTC 282155
|| ||||| || | || | ||| | || ||| | ||| |||| | || ||||| |
Sbjct 2122943 GCAGTCCTCAGACGTCTCAGAGCTCT--CTTGTTGCTGCTCAGATCTTTCTTGTATTTCC 2123000
Query 282156 TCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATT 282215
|||| || |||| ||| | | || | || || ||||| || || || || | |
Sbjct 2123001 TCTTAAATTCTTGCACAAAGTGGTTCACCATTCGGTTGTCAAAGTCCTCGCCACCGAGAT 2123060
Query 282216 TAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAA 282275
|| | || | ||| | | |||| | || | ||||| || | | || || | |
Sbjct 2123061 GCGTGTCGCCGGCCGTGGATTTTACCTCAAAGATACCATCCTCGATCGTCAGAATCGACA 2123120
Query 282276 CATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTT 282335
| ||| ||| || ||||||| || || || | || ||| |||| | || |
Sbjct 2123121 CGTCAAAGGTACCGCCACCCAAGTCGAAGATCAAAACGTTCTTTTCACCTGCAGCCTTCT 2123180
Query 282336 TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAA 282395
| || ||||||||||| | || || || || || || || || ||||| | ||| || |
Sbjct 2123181 TGTCGAGACCATACGCTATCGCGGCGGCTGTGGGCTCGTTTATTATTCTGAGAACGTTCA 2123240
Query 282396 GACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAG 282455
| |||||||| || ||||| || || ||||| || || || || || ||||| || |
Sbjct 2123241 GGCCAGCAATAGCGCCGGCATCCTTTGTTGCTTGCCTCTGAGAGTCATTGAAATAAGCCG 2123300
Query 282456 GAACAGTAATAACGGCATCTGT 282477
| ||||| || ||||||| |||
Sbjct 2123301 GCACAGTGATGACGGCATTTGT 2123322
>seq10556
Length=418102
Score = 132 bits (146), Expect = 4e-25
Identities = 440/679 (65%), Gaps = 4/679 (1%)
Strand=Plus/Minus
Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485
|||| ||||| || ||||| || ||||| | || || || |||||||| ||||| ||
Sbjct 88133 GCAGAGACATTGAGGATACCGTTCGCATCGATGTCGAACGTCACTTCAATCTGAGGAACT 88074
Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTA-AATGTTCCCAGATTATTATTATCTTT 281544
|| | | || ||||| || || | || || ||| | ||||| ||||||||| ||
Sbjct 88073 CCACGGGGTGCTGGTGGAATACCG-CTAAGTTCGAATTTACCCAGTAGATTATTATCCTT 88015
Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604
|| | || |||||||| | | ||| || || ||| |||||| || | ||
Sbjct 88014 GGTCATGGCGCGCTCACCCTCATATACTTGAATCAACACACCAGGTTGATTGTCGGCGTA 87955
Query 281605 AGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664
||||||||| | | | || || || || || ||||| | ||||| |||
Sbjct 87954 AGTTGTAAAGGTTTGAGTCTGCTTCGTCGGGATGGTGGTATTTCTCTTAATAAGCGCGGT 87895
Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724
||| | ||| || || || || | ||| ||||| || |||||||| |||| ||| | |
Sbjct 87894 CATGACACCGCCGGCAGTCTCGATACCCAGAGAGAGCGGAGTGACGTCAAGTAGAAGCAA 87835
Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACC-AACAAGAATAGCTGCTTGAATAGCAGCACCAT 281783
| ||| | | ||| | | ||| |||| |||||||| || | ||| || ||||
Sbjct 87834 GTCTTGCACCTCTTCGGATTTATCACCGTGCAAG-ATAGCTGCCTGTACAGCCGCGCCAT 87776
Query 281784 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTG 281843
| || ||||| || || ||||| | || || || || | ||| || ||||| || |
Sbjct 87775 AAGCGACAGCCTCGTCGGGATTGATAGATTTGTTGAGCTCTTTGCCGTTGAAGAAGTCCT 87716
Query 281844 AAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 281903
|| || | | | ||| || || || | || ||||| || || || || || || |
Sbjct 87715 GTAGGAGCTTTTGAATCTTGGGGATTCGCGTAGAGCCTCCGACCAAGACGATATCGTGGA 87656
Query 281904 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTC 281963
|| | ||| |||| || | || || ||| ||||| ||||||||| | | |
Sbjct 87655 TTTGAGCTTTGTCCATCTTGGCGTCGCGCAACGATTTCTCAACAGGTTCAAGAGTACCGC 87596
Query 281964 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAA 282023
|| | || | || ||||| ||||| || | || | | | | |||| |
Sbjct 87595 GGAAGAGATCGGCGCAGAGTTCCTCGAAACGGGCACGGGTGATGGAGGTGTAGAAATCGA 87536
Query 282024 TTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTT 282083
|||| ||| |||| ||||||| || || | | || || || || || || | ||| |
Sbjct 87535 TTCCCTCGTACAACGAATCAATCTCGATGCTGGCCTGGGTGGAGGACGACAGGGTACGCT 87476
Query 282084 TAGCACGTTCACATGCTGT 282102
| |||||||| || || ||
Sbjct 87475 TGGCACGTTCGCAGGCCGT 87457
>seq9994
Length=6265506
Score = 123 bits (136), Expect = 2e-22
Identities = 144/194 (74%), Gaps = 3/194 (2%)
Strand=Plus/Plus
Query 637114 AAGAAAA---TTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGA 637170
||||||| | ||||| |||| |||| ||| || ||||| || ||||||||| | |||
Sbjct 975687 AAGAAAAGAGTAATTGTAGATTTTTCTAGTCCTAACATTGCCAAGGAAATGCATGTCGGA 975746
Query 637171 CATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACAC 637230
|| |||||||| || || ||||| || ||| | ||| | |||||| | |||||
Sbjct 975747 CACTTAAGATCTACGATAATTGGAGACAGTATCTCAAGGTTGTTAGAATACTTAGGACAT 975806
Query 637231 GATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCT 637290
||||| | | |||||||||| ||||||||||| || ||||| |||||||| || ||
Sbjct 975807 GATGTATTGAGACTTAATCATGTAGGTGATTGGGGTACACAATTTGGTATGTTGATAGCA 975866
Query 637291 TATATTAAAAATAA 637304
|| || || ||||
Sbjct 975867 CATCTTCAAGATAA 975880
>seq10535
Length=209863
Score = 111 bits (122), Expect = 1e-18
Identities = 146/202 (72%), Gaps = 8/202 (4%)
Strand=Plus/Plus
Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381
||| |||| | |||||| | ||||| |||| ||||| |||||||| |||||||| |
Sbjct 206655 TTTATCTTCTTGTTTATCCATTCCATAAGCAAGTGCAGCTGCAGTTGGCTCATTAATTAC 206714
Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441
| | ||||| | || ||||| || ||||| || || ||||||| |||||||||
Sbjct 206715 ACGAAGCACATTCAATCCTGCAATCTGACCAGCATCCTTTGTCGCTTGTCGTTGTGAATC 206774
Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT----TCTTTTCCAATATAAG 282497
|||||||| || || ||||||||||| |||| ||||| | ||| | |||||
Sbjct 206775 ATTAAAATACGCTGGTACAGTAATAACAGCATTCTTTACTGGAGTATTT----AAATAAG 206830
Query 282498 CGCTTGCTGTTTGTTTCATTTT 282519
| || |||| |||||||||
Sbjct 206831 CTGCAGCAGTTTCTTTCATTTT 206852
Score = 104 bits (114), Expect = 2e-16
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178
|| || ||||| || ||||||||||| |||||||||| ||| |||| || || |||
Sbjct 206677 CCATAAGCAAGTGCAGCTGCAGTTGGCTCATTAATTACACGAAGCACATTCAATCCTGCA 206736
Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238
|| | | ||| ||| || ||||||| |||| ||||||||||| ||||||||||||
Sbjct 206737 ATCTGACCAGCATCCTTTGTCGCTTGTCGTTGTGAATCATTAAAATACGCTGGTACAGTA 206796
Query 86239 ATAACTGCTTTATTAATAGGTTTTTGTAAATA 86270
||||| || || || | || | | ||||||
Sbjct 206797 ATAACAGCATTCTTTACTGGAGTATTTAAATA 206828
>seq11804
Length=2961632
Score = 93.3 bits (102), Expect = 3e-13
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 432280 GATTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGT 432339
|||||| || ||||| ||| | ||| | || ||||||||||| || ||||| || | |
Sbjct 1774985 GATTGAAGGGAAAAGAGGGTAGAATTCGTGGGAATTTGATGGGTAAACGTGTGGACTTCT 1774926
Query 432340 CTGCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTC 432399
|||||||||| ||||| ||| ||||||| ||| | | | || |||| || || || |
Sbjct 1774925 CTGCACGTACTGTTATCACTCCTGATCCCAATTTACGTATTGATCAAGTAGGCGTACCGC 1774866
Query 432400 TCATTATTGCGAAAAATCTTACTTTTGACGAAATTGTAACA 432440
|| ||| || ||||||| || || || ||||| |||
Sbjct 1774865 GCAGTATAGCCCAAAATCTGACATTCCCTGAGATTGTGACA 1774825
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3739875356091654
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |