Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq10440 190 2e-42 seq10556 132 4e-25 seq9994 123 2e-22 seq10535 111 1e-18 seq11804 93.3 3e-13 >seq10440 Length=2225863 Score = 190 bits (210), Expect = 2e-42 Identities = 674/1042 (65%), Gaps = 12/1042 (1%) Strand=Plus/Plus Query 281442 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 281501 ||||||| || || | |||||| |||||||| ||||| || || |||| | || || | Sbjct 2122287 TACCATTAGCGTCGATATCAAAAGTGACTTCGATTTGCGGAACACCTCGAGGCGCTGGAG 2122346 Query 281502 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 281561 | || || || | |||| | || || | |||||||| || || | || || | Sbjct 2122347 GAATACCCGTCAGCTCAAATTTGCCGAGGATGTTATTATCCTTCGTCATCGCTCTCTCTC 2122406 Query 281562 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 281621 ||||| | | || ||| ||| | | |||||| || || || || || || ||||| Sbjct 2122407 CCTCGTAGACCTGTATAAGCACTCCCGGTTGATTGTCGGAGTACGTGGTGAACG-TCTGG 2122465 Query 281622 ATTTTTTACAA-GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 | | || | || || || ||||| || | ||| | | ||||||| || ||||| Sbjct 2122466 GTCTGTTTCGTTGGTATCGTCGTGTTCCTCTTAATCAAGGTAGTCATAACGCCGCCAGCG 2122525 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 281740 ||||| | ||| | || | ||||| || || | ||| | | || ||| | || || Sbjct 2122526 GTTTCAATACCCAATGACAACGGAGTCACGTCCAGTAGAAGTAGATCTTGGACTTCCTCG 2122585 Query 281741 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 281800 | | || ||||| || || |||| || |||||||| ||||| || || || Sbjct 2122586 GACTTGTCGCCGTGCAGAATGGCCGCCTGAACTGCCGCACCATAAGCAACGGCCTCGTCC 2122645 Query 281801 GGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACC 281860 ||||| | | || ||| |||| || || || || |||| | ||| || | ||| | Sbjct 2122646 GGATTGATGGATTTATTCAGTTCCTTGCCGTTAAAGAAATCTTGAAGTAGCT-TCTGAAT 2122704 Query 281861 TTA-GGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 281919 || || || | | || || || |||| || || || || || | |||||||| Sbjct 2122705 TTTTGGTATCCTGGTGGAGCCACCGACTAGAACGATGCTGTGAACTTGGGCTTTATCCAT 2122764 Query 281920 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACA 281979 || | || | | ||||| |||||||||||| |||||||| || | || Sbjct 2122765 CTTCGCGTCTCTAAGCGCCTTTTCCACGGGTTCAAGAGTGCTTCTAAACAGATCGGCGCA 2122824 Query 281980 AAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAA 282037 || || |||||| | |||||||| | | || | || || ||||| || || ||||| Sbjct 2122825 GAGCTCCTCGAATCTGGCTCTAGTTACCG--ACGTATAGAAGTCAATGCCCTCAAACAAT 2122882 Query 282038 GAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACAT 282097 ||||| | ||| || | | || || || || | || | || || | || || Sbjct 2122883 GAATCGATTTCGATGCTCGCCTGCGTTGATGAGCTCAATGTTCTCTTCGCTCTCTCGCAA 2122942 Query 282098 GCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAATCTGTTTTATATTTTC 282155 || ||||| || | || | ||| | || ||| | ||| |||| | || ||||| | Sbjct 2122943 GCAGTCCTCAGACGTCTCAGAGCTCT--CTTGTTGCTGCTCAGATCTTTCTTGTATTTCC 2123000 Query 282156 TCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATT 282215 |||| || |||| ||| | | || | || || ||||| || || || || | | Sbjct 2123001 TCTTAAATTCTTGCACAAAGTGGTTCACCATTCGGTTGTCAAAGTCCTCGCCACCGAGAT 2123060 Query 282216 TAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAA 282275 || | || | ||| | | |||| | || | ||||| || | | || || | | Sbjct 2123061 GCGTGTCGCCGGCCGTGGATTTTACCTCAAAGATACCATCCTCGATCGTCAGAATCGACA 2123120 Query 282276 CATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTT 282335 | ||| ||| || ||||||| || || || | || ||| |||| | || | Sbjct 2123121 CGTCAAAGGTACCGCCACCCAAGTCGAAGATCAAAACGTTCTTTTCACCTGCAGCCTTCT 2123180 Query 282336 TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAA 282395 | || ||||||||||| | || || || || || || || || ||||| | ||| || | Sbjct 2123181 TGTCGAGACCATACGCTATCGCGGCGGCTGTGGGCTCGTTTATTATTCTGAGAACGTTCA 2123240 Query 282396 GACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAG 282455 | |||||||| || ||||| || || ||||| || || || || || ||||| || | Sbjct 2123241 GGCCAGCAATAGCGCCGGCATCCTTTGTTGCTTGCCTCTGAGAGTCATTGAAATAAGCCG 2123300 Query 282456 GAACAGTAATAACGGCATCTGT 282477 | ||||| || ||||||| ||| Sbjct 2123301 GCACAGTGATGACGGCATTTGT 2123322 >seq10556 Length=418102 Score = 132 bits (146), Expect = 4e-25 Identities = 440/679 (65%), Gaps = 4/679 (1%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||||| || ||||| || ||||| | || || || |||||||| ||||| || Sbjct 88133 GCAGAGACATTGAGGATACCGTTCGCATCGATGTCGAACGTCACTTCAATCTGAGGAACT 88074 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTA-AATGTTCCCAGATTATTATTATCTTT 281544 || | | || ||||| || || | || || ||| | ||||| ||||||||| || Sbjct 88073 CCACGGGGTGCTGGTGGAATACCG-CTAAGTTCGAATTTACCCAGTAGATTATTATCCTT 88015 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604 || | || |||||||| | | ||| || || ||| |||||| || | || Sbjct 88014 GGTCATGGCGCGCTCACCCTCATATACTTGAATCAACACACCAGGTTGATTGTCGGCGTA 87955 Query 281605 AGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 281664 ||||||||| | | | || || || || || ||||| | ||||| ||| Sbjct 87954 AGTTGTAAAGGTTTGAGTCTGCTTCGTCGGGATGGTGGTATTTCTCTTAATAAGCGCGGT 87895 Query 281665 CATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| | ||| || || || || | ||| ||||| || |||||||| |||| ||| | | Sbjct 87894 CATGACACCGCCGGCAGTCTCGATACCCAGAGAGAGCGGAGTGACGTCAAGTAGAAGCAA 87835 Query 281725 ATTTTGAAGTTTTTCATCAGTTTGACC-AACAAGAATAGCTGCTTGAATAGCAGCACCAT 281783 | ||| | | ||| | | ||| |||| |||||||| || | ||| || |||| Sbjct 87834 GTCTTGCACCTCTTCGGATTTATCACCGTGCAAG-ATAGCTGCCTGTACAGCCGCGCCAT 87776 Query 281784 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTG 281843 | || ||||| || || ||||| | || || || || | ||| || ||||| || | Sbjct 87775 AAGCGACAGCCTCGTCGGGATTGATAGATTTGTTGAGCTCTTTGCCGTTGAAGAAGTCCT 87716 Query 281844 AAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 281903 || || | | | ||| || || || | || ||||| || || || || || || | Sbjct 87715 GTAGGAGCTTTTGAATCTTGGGGATTCGCGTAGAGCCTCCGACCAAGACGATATCGTGGA 87656 Query 281904 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTC 281963 || | ||| |||| || | || || ||| ||||| ||||||||| | | | Sbjct 87655 TTTGAGCTTTGTCCATCTTGGCGTCGCGCAACGATTTCTCAACAGGTTCAAGAGTACCGC 87596 Query 281964 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAA 282023 || | || | || ||||| ||||| || | || | | | | |||| | Sbjct 87595 GGAAGAGATCGGCGCAGAGTTCCTCGAAACGGGCACGGGTGATGGAGGTGTAGAAATCGA 87536 Query 282024 TTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTT 282083 |||| ||| |||| ||||||| || || | | || || || || || || | ||| | Sbjct 87535 TTCCCTCGTACAACGAATCAATCTCGATGCTGGCCTGGGTGGAGGACGACAGGGTACGCT 87476 Query 282084 TAGCACGTTCACATGCTGT 282102 | |||||||| || || || Sbjct 87475 TGGCACGTTCGCAGGCCGT 87457 >seq9994 Length=6265506 Score = 123 bits (136), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 637114 AAGAAAA---TTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGA 637170 ||||||| | ||||| |||| |||| ||| || ||||| || ||||||||| | ||| Sbjct 975687 AAGAAAAGAGTAATTGTAGATTTTTCTAGTCCTAACATTGCCAAGGAAATGCATGTCGGA 975746 Query 637171 CATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACAC 637230 || |||||||| || || ||||| || ||| | ||| | |||||| | ||||| Sbjct 975747 CACTTAAGATCTACGATAATTGGAGACAGTATCTCAAGGTTGTTAGAATACTTAGGACAT 975806 Query 637231 GATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCT 637290 ||||| | | |||||||||| ||||||||||| || ||||| |||||||| || || Sbjct 975807 GATGTATTGAGACTTAATCATGTAGGTGATTGGGGTACACAATTTGGTATGTTGATAGCA 975866 Query 637291 TATATTAAAAATAA 637304 || || || |||| Sbjct 975867 CATCTTCAAGATAA 975880 >seq10535 Length=209863 Score = 111 bits (122), Expect = 1e-18 Identities = 146/202 (72%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 ||| |||| | |||||| | ||||| |||| ||||| |||||||| |||||||| | Sbjct 206655 TTTATCTTCTTGTTTATCCATTCCATAAGCAAGTGCAGCTGCAGTTGGCTCATTAATTAC 206714 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 | | ||||| | || ||||| || ||||| || || ||||||| ||||||||| Sbjct 206715 ACGAAGCACATTCAATCCTGCAATCTGACCAGCATCCTTTGTCGCTTGTCGTTGTGAATC 206774 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT----TCTTTTCCAATATAAG 282497 |||||||| || || ||||||||||| |||| ||||| | ||| | ||||| Sbjct 206775 ATTAAAATACGCTGGTACAGTAATAACAGCATTCTTTACTGGAGTATTT----AAATAAG 206830 Query 282498 CGCTTGCTGTTTGTTTCATTTT 282519 | || |||| ||||||||| Sbjct 206831 CTGCAGCAGTTTCTTTCATTTT 206852 Score = 104 bits (114), Expect = 2e-16 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 || || ||||| || ||||||||||| |||||||||| ||| |||| || || ||| Sbjct 206677 CCATAAGCAAGTGCAGCTGCAGTTGGCTCATTAATTACACGAAGCACATTCAATCCTGCA 206736 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 || | | ||| ||| || ||||||| |||| ||||||||||| |||||||||||| Sbjct 206737 ATCTGACCAGCATCCTTTGTCGCTTGTCGTTGTGAATCATTAAAATACGCTGGTACAGTA 206796 Query 86239 ATAACTGCTTTATTAATAGGTTTTTGTAAATA 86270 ||||| || || || | || | | |||||| Sbjct 206797 ATAACAGCATTCTTTACTGGAGTATTTAAATA 206828 >seq11804 Length=2961632 Score = 93.3 bits (102), Expect = 3e-13 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 432280 GATTGAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGT 432339 |||||| || ||||| ||| | ||| | || ||||||||||| || ||||| || | | Sbjct 1774985 GATTGAAGGGAAAAGAGGGTAGAATTCGTGGGAATTTGATGGGTAAACGTGTGGACTTCT 1774926 Query 432340 CTGCACGTACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTC 432399 |||||||||| ||||| ||| ||||||| ||| | | | || |||| || || || | Sbjct 1774925 CTGCACGTACTGTTATCACTCCTGATCCCAATTTACGTATTGATCAAGTAGGCGTACCGC 1774866 Query 432400 TCATTATTGCGAAAAATCTTACTTTTGACGAAATTGTAACA 432440 || ||| || ||||||| || || || ||||| ||| Sbjct 1774865 GCAGTATAGCCCAAAATCTGACATTCCCTGAGATTGTGACA 1774825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739875356091654