Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq10177 125 7e-24
seq15293 98.7 1e-15
seq9764 93.3 4e-14
>seq10177
Length=3058365
Score = 125 bits (138), Expect = 7e-24
Identities = 145/193 (75%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529
|||| || |||||||||||| || || | | | ||||| ||||| ||||| ||| |
Sbjct 2346113 CTTTTTGAATATTGTAATCGGACAGAGTACGTCCA-TCCTCCAGCTGTTTGCCAGCGAAG 2346171
Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589
||||| ||||| || || || || || ||||||||||| |||||| ||||| | |
Sbjct 2346172 ATGAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTC 2346231
Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649
|| | || |||| | ||| || |||| ||||| |||||| || || || ||||| |||
Sbjct 2346232 TCGATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACG 2346291
Query 133650 AAAATCTGCATGG 133662
|||||||||||||
Sbjct 2346292 AAAATCTGCATGG 2346304
>seq15293
Length=768699
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/210 (71%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512
||||||| ||| || ||||| || || || ||||| | || |||| ||| || |
Sbjct 127319 AAATGTAAGGTTGATTCTTTTTGAATGTTATAATCAGAGAGAGT--ACGACCGTCTTCAA 127376
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
| ||||| || ||| | || | |||||||| || || |||||||||||||| || ||
Sbjct 127377 GTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGGA 127436
Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||||| || | | ||||| || || | | ||| || || | || | ||| || |
Sbjct 127437 TCTTTGCTTTTACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAGAGTTATGGTCTTCC 127496
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATGG 133662
|||||| || || ||||||||||||||||
Sbjct 127497 CGGTCAACGTCTTCACGAAAATCTGCATGG 127526
Score = 96.9 bits (106), Expect = 3e-15
Identities = 144/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| || ||||| || |||||||| ||| || || | | | ||||| ||||| |||||
Sbjct 125732 GTAGATTCTTTTTGAATATTGTAGTCGGACAAAGTCCGTCCA-TCCTCCAGCTGTTTGCC 125790
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|||| |||| || | || || |||||||| |||||||| || || ||| ||| ||||
Sbjct 125791 CGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCT-TGAATTTTCGCTT 125849
Query 133583 GAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | ||| | |||||| | | || || || | |||| ||||| || || ||||
Sbjct 125850 TCACGTTCTCGATCGTGTCAGACGCTTCGACCTCCAATGTGATAGTTTTACCAGTGAGAG 125909
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || ||||||||||||||
Sbjct 125910 TCTTGACGAAAATCTGCAT 125928
Score = 91.5 bits (100), Expect = 1e-13
Identities = 116/157 (74%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
||| || ||||| || || ||| |||| | | |||||| || |||||||| ||||| ||
Sbjct 126229 GTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTT 126288
Query 133565 GTCGGTGATCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
||| ||| ||| |||| | | |||| |||||||| | ||| || || | ||||
Sbjct 126289 GTCT-TGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGA 126347
Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||||||||| || ||||| || ||||| |||||
Sbjct 126348 TTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126384
Score = 91.5 bits (100), Expect = 1e-13
Identities = 116/157 (74%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
||| || ||||| || || ||| |||| | | |||||| || |||||||| ||||| ||
Sbjct 126457 GTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTT 126516
Query 133565 GTCGGTGATCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
||| ||| ||| |||| | | |||| |||||||| | ||| || || | ||||
Sbjct 126517 GTCT-TGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGA 126575
Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||||||||| || ||||| || ||||| |||||
Sbjct 126576 TTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126612
Score = 91.5 bits (100), Expect = 1e-13
Identities = 116/157 (74%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
||| || ||||| || || ||| |||| | | |||||| || |||||||| ||||| ||
Sbjct 126685 GTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTT 126744
Query 133565 GTCGGTGATCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
||| ||| ||| |||| | | |||| |||||||| | ||| || || | ||||
Sbjct 126745 GTCT-TGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGA 126803
Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||||||||| || ||||| || ||||| |||||
Sbjct 126804 TTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126840
Score = 86.0 bits (94), Expect = 6e-12
Identities = 147/209 (70%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512
||||||| ||| || ||||| || || || ||||| | || ||| ||| || |
Sbjct 127091 AAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAGAGAGT--ACGGCCGTCTTCAA 127148
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
| ||||| || ||| | || | |||||||| || || ||||||||||||||||| |||
Sbjct 127149 GTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTGTC-CTGA 127207
Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631
||| || |||| | || | ||| || | | ||| || || | |||| |||||
Sbjct 127208 ATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTT 127267
Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||| ||||| || || || |||||
Sbjct 127268 CCCGTCAGGGTTTTGACAAAGATTTGCAT 127296
Score = 82.4 bits (90), Expect = 7e-11
Identities = 144/207 (70%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514
||||| | ||| || || ||||| || || ||||| | |||| ||| || |||
Sbjct 125951 AAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTGCGGCCGTCTTCAAGC 126010
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|| || || || | || | | |||||| || |||||||| ||||| ||||| |||
Sbjct 126011 TGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCC-TGAAT 126069
Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
||| |||| | | |||| |||||| | | || || || | |||| ||||||||
Sbjct 126070 TTTAGCTTTCACGTTTTCAATCGTGTCCGATGCTTCGACTTCCAGAGTGATTGTTTTGCC 126129
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
||| || ||||| || ||||| |||||
Sbjct 126130 GGTGAGTGTTTTGACAAAAATTTGCAT 126156
Score = 82.4 bits (90), Expect = 7e-11
Identities = 114/157 (73%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
||| || ||||| || || ||| |||| | | |||||| || |||||||| ||||||||
Sbjct 126913 GTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCCTT 126972
Query 133565 GTCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
||| ||| |||||| |||| | || | ||| || | | ||| || || | ||||
Sbjct 126973 GTC-TTGAATTTTTGCTTTGACATTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGA 127031
Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
||||| || ||||| ||||| || || || |||||
Sbjct 127032 TAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCAT 127068
>seq9764
Length=1320143
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521
||||| ||||| || || ||||||||| | ||| | | ||| || ||||||||||
Sbjct 200071 GTGGATTCTTTTTGAATGTTGTAATCGGAGA--GTGTTCTACCGTCTTCCAGCTGCTTGC 200014
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | || | || || || || ||||| |||||||| || || |||||| |
Sbjct 200013 CAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGGATCTTGGCTT 199954
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | || | || || | || || || || | ||||| |||||| || || ||||
Sbjct 199953 TCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATGGTTTTCCCAGTGAGAG 199894
Query 133642 TTTTTACGAAAATCTGCAT 133660
|||||||||| ||||||||
Sbjct 199893 TTTTTACGAAGATCTGCAT 199875
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521
||||| ||||| || || ||||||||| | ||| | | ||| || ||||||||||
Sbjct 200527 GTGGATTCTTTTTGAATGTTGTAATCGGAGA--GTGTTCTACCGTCTTCCAGCTGCTTGC 200470
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | || | || || || || ||||| |||||||| ||||| |||||| ||
Sbjct 200469 CAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCT 200410
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | || | || || | || || || |||| ||||| |||||| || || ||||
Sbjct 200409 TCACATTTTCTATTGTATCAGAGGCTTCAACTTCGAGGGTGATGGTTTTCCCAGTGAGAG 200350
Query 133642 TTTTTACGAAAATCTGCAT 133660
|||| || || || |||||
Sbjct 200349 TTTTCACAAAGATTTGCAT 200331
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521
||||| ||||| || || ||||||||| | ||| | | ||| || ||||||||||
Sbjct 200755 GTGGATTCTTTTTGAATGTTGTAATCGGAGA--GTGTTCTACCGTCTTCCAGCTGCTTGC 200698
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| | || | || || || || ||||| |||||||| || || |||||| |
Sbjct 200697 CAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGGATCTTGGCTT 200638
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | || | || || | || || || || | ||||| |||||| || || ||||
Sbjct 200637 TCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATGGTTTTCCCAGTGAGAG 200578
Query 133642 TTTTTACGAAAATCTGCAT 133660
|||||||||| ||||||||
Sbjct 200577 TTTTTACGAAGATCTGCAT 200559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483327868393960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |