Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq10177 125 7e-24 seq15293 98.7 1e-15 seq9764 93.3 4e-14 >seq10177 Length=3058365 Score = 125 bits (138), Expect = 7e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 |||| || |||||||||||| || || | | | ||||| ||||| ||||| ||| | Sbjct 2346113 CTTTTTGAATATTGTAATCGGACAGAGTACGTCCA-TCCTCCAGCTGTTTGCCAGCGAAG 2346171 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 ||||| ||||| || || || || || ||||||||||| |||||| ||||| | | Sbjct 2346172 ATGAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTC 2346231 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | || |||| | ||| || |||| ||||| |||||| || || || ||||| ||| Sbjct 2346232 TCGATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACG 2346291 Query 133650 AAAATCTGCATGG 133662 ||||||||||||| Sbjct 2346292 AAAATCTGCATGG 2346304 >seq15293 Length=768699 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 ||||||| ||| || ||||| || || || ||||| | || |||| ||| || | Sbjct 127319 AAATGTAAGGTTGATTCTTTTTGAATGTTATAATCAGAGAGAGT--ACGACCGTCTTCAA 127376 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | ||||| || ||| | || | |||||||| || || |||||||||||||| || || Sbjct 127377 GTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGGA 127436 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||||| || | | ||||| || || | | ||| || || | || | ||| || | Sbjct 127437 TCTTTGCTTTTACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAGAGTTATGGTCTTCC 127496 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATGG 133662 |||||| || || |||||||||||||||| Sbjct 127497 CGGTCAACGTCTTCACGAAAATCTGCATGG 127526 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || ||||| || |||||||| ||| || || | | | ||||| ||||| ||||| Sbjct 125732 GTAGATTCTTTTTGAATATTGTAGTCGGACAAAGTCCGTCCA-TCCTCCAGCTGTTTGCC 125790 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 |||| |||| || | || || |||||||| |||||||| || || ||| ||| |||| Sbjct 125791 CGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCT-TGAATTTTCGCTT 125849 Query 133583 GAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | ||| | |||||| | | || || || | |||| ||||| || || |||| Sbjct 125850 TCACGTTCTCGATCGTGTCAGACGCTTCGACCTCCAATGTGATAGTTTTACCAGTGAGAG 125909 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 125910 TCTTGACGAAAATCTGCAT 125928 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || ||||| || || ||| |||| | | |||||| || |||||||| ||||| || Sbjct 126229 GTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTT 126288 Query 133565 GTCGGTGATCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 ||| ||| ||| |||| | | |||| |||||||| | ||| || || | |||| Sbjct 126289 GTCT-TGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGA 126347 Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||||| || ||||| || ||||| ||||| Sbjct 126348 TTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126384 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || ||||| || || ||| |||| | | |||||| || |||||||| ||||| || Sbjct 126457 GTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTT 126516 Query 133565 GTCGGTGATCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 ||| ||| ||| |||| | | |||| |||||||| | ||| || || | |||| Sbjct 126517 GTCT-TGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGA 126575 Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||||| || ||||| || ||||| ||||| Sbjct 126576 TTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126612 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || ||||| || || ||| |||| | | |||||| || |||||||| ||||| || Sbjct 126685 GTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTT 126744 Query 133565 GTCGGTGATCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 ||| ||| ||| |||| | | |||| |||||||| | ||| || || | |||| Sbjct 126745 GTCT-TGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGA 126803 Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||||| || ||||| || ||||| ||||| Sbjct 126804 TTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126840 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 ||||||| ||| || ||||| || || || ||||| | || ||| ||| || | Sbjct 127091 AAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAGAGAGT--ACGGCCGTCTTCAA 127148 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | ||||| || ||| | || | |||||||| || || ||||||||||||||||| ||| Sbjct 127149 GTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTGTC-CTGA 127207 Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| || |||| | || | ||| || | | ||| || || | |||| ||||| Sbjct 127208 ATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTT 127267 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| ||||| || || || ||||| Sbjct 127268 CCCGTCAGGGTTTTGACAAAGATTTGCAT 127296 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||| || || ||||| || || ||||| | |||| ||| || ||| Sbjct 125951 AAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTGCGGCCGTCTTCAAGC 126010 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || || | || | | |||||| || |||||||| ||||| ||||| ||| Sbjct 126011 TGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCC-TGAAT 126069 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| |||| | | |||| |||||| | | || || || | |||| |||||||| Sbjct 126070 TTTAGCTTTCACGTTTTCAATCGTGTCCGATGCTTCGACTTCCAGAGTGATTGTTTTGCC 126129 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || ||||| || ||||| ||||| Sbjct 126130 GGTGAGTGTTTTGACAAAAATTTGCAT 126156 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || ||||| || || ||| |||| | | |||||| || |||||||| |||||||| Sbjct 126913 GTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCCTT 126972 Query 133565 GTCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 ||| ||| |||||| |||| | || | ||| || | | ||| || || | |||| Sbjct 126973 GTC-TTGAATTTTTGCTTTGACATTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGA 127031 Query 133624 CGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || ||||| ||||| || || || ||||| Sbjct 127032 TAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCAT 127068 >seq9764 Length=1320143 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 ||||| ||||| || || ||||||||| | ||| | | ||| || |||||||||| Sbjct 200071 GTGGATTCTTTTTGAATGTTGTAATCGGAGA--GTGTTCTACCGTCTTCCAGCTGCTTGC 200014 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | || || || || ||||| |||||||| || || |||||| | Sbjct 200013 CAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGGATCTTGGCTT 199954 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || || | || || || || | ||||| |||||| || || |||| Sbjct 199953 TCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATGGTTTTCCCAGTGAGAG 199894 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||||||||| |||||||| Sbjct 199893 TTTTTACGAAGATCTGCAT 199875 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 ||||| ||||| || || ||||||||| | ||| | | ||| || |||||||||| Sbjct 200527 GTGGATTCTTTTTGAATGTTGTAATCGGAGA--GTGTTCTACCGTCTTCCAGCTGCTTGC 200470 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | || || || || ||||| |||||||| ||||| |||||| || Sbjct 200469 CAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCT 200410 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || || | || || || |||| ||||| |||||| || || |||| Sbjct 200409 TCACATTTTCTATTGTATCAGAGGCTTCAACTTCGAGGGTGATGGTTTTCCCAGTGAGAG 200350 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || || ||||| Sbjct 200349 TTTTCACAAAGATTTGCAT 200331 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 ||||| ||||| || || ||||||||| | ||| | | ||| || |||||||||| Sbjct 200755 GTGGATTCTTTTTGAATGTTGTAATCGGAGA--GTGTTCTACCGTCTTCCAGCTGCTTGC 200698 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || | || || || || ||||| |||||||| || || |||||| | Sbjct 200697 CAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGGATCTTGGCTT 200638 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | || || | || || || || | ||||| |||||| || || |||| Sbjct 200637 TCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATGGTTTTCCCAGTGAGAG 200578 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||||||||| |||||||| Sbjct 200577 TTTTTACGAAGATCTGCAT 200559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483327868393960