Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq15293 120 2e-22
seq9764 102 5e-17
>seq15293
Length=768699
Score = 120 bits (132), Expect = 2e-22
Identities = 166/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | ||||| | |||||||| | || || || || |||||||| || ||
Sbjct 126157 ACCACCACGTAAACGGAGAACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAGA 126216
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|||||||| |||| || | ||||||||||| ||||| || | |||||||||| | ||
Sbjct 126217 AAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGG 126276
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||||||||| |||||| |||| || | || | |||||| || || |
Sbjct 126277 GATTCCTTCTTTGTCTTGAATTTTAGCTTTC-ACGTTTTCAATCGTGTCGGATGCCTCAA 126335
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| ||||| || || | |||||| ||||| || ||||||
Sbjct 126336 CTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCATA 126385
Score = 120 bits (132), Expect = 2e-22
Identities = 166/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | ||||| | |||||||| | || || || || |||||||| || ||
Sbjct 126385 ACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGA 126444
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|||||||| |||| || | ||||||||||| ||||| || | |||||||||| | ||
Sbjct 126445 AAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGG 126504
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||||||||| |||||| |||| || | || | |||||| || || |
Sbjct 126505 GATTCCTTCTTTGTCTTGAATTTTAGCTTTC-ACGTTTTCAATCGTGTCGGATGCCTCAA 126563
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| ||||| || || | |||||| ||||| || ||||||
Sbjct 126564 CTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCATA 126613
Score = 120 bits (132), Expect = 2e-22
Identities = 166/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | ||||| | |||||||| | || || || || |||||||| || ||
Sbjct 126613 ACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGA 126672
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|||||||| |||| || | ||||||||||| ||||| || | |||||||||| | ||
Sbjct 126673 AAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGG 126732
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||||||||| |||||| |||| || | || | |||||| || || |
Sbjct 126733 GATTCCTTCTTTGTCTTGAATTTTAGCTTTC-ACGTTTTCAATCGTGTCGGATGCCTCAA 126791
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| ||||| || || | |||||| ||||| || ||||||
Sbjct 126792 CTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCATA 126841
Score = 113 bits (124), Expect = 3e-20
Identities = 155/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597
|| |||||||| || || || || || ||||| ||||| || || ||||| ||||
Sbjct 125945 AAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTGCGGCCGTCT 126004
Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657
|| | |||||||||||||| ||||| | |||||||||| | || | |||||||||||
Sbjct 126005 TCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCC 126064
Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716
|||||| |||| || | || | ||||| || ||| || || | ||||| ||
Sbjct 126065 TGAATTTTAGCTTTC-ACGTTTTCAATCGTGTCCGATGCTTCGACTTCCAGAGTGATTGT 126123
Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
||| || || | ||||| ||||| || ||||||
Sbjct 126124 TTTGCCGGTGAGTGTTTTGACAAAAATTTGCATA 126157
Score = 113 bits (124), Expect = 3e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
|||||| | ||||| | |||||||| | || || || || |||||||| || ||
Sbjct 126841 ACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGA 126900
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|||||||| |||| || | ||||||||||| ||||| || | |||||||||| | ||
Sbjct 126901 AAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGG 126960
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||| ||||| |||||| || || |||| || | || || || || |
Sbjct 126961 GATTCCTTCCTTGTCTTGAATTTT-TGCTTTGACATTTTCGATCGTATCTGATGCCTCAA 127019
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | |||||| ||||| || || | ||||| |||||||| |||||
Sbjct 127020 CTTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCAT 127068
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | | ||| | |||||||||| || |||||||| ||||| ||||| |||
Sbjct 127070 CCACCACGTAGACGAAGAACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAG 127129
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || || |||| || | ||| |||||||| || ||||||||||||||||| | ||
Sbjct 127130 AGAGTACGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGG 127189
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| ||||| |||||| | || || | || | || || || || ||
Sbjct 127190 ATGCCTTCCTTGTCCTGAATTTT-GGCTTTGACGTTTTCGATCGTATCTGATGCCTCAAC 127248
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | |||||| ||||| || || | ||||| |||||||| |||||
Sbjct 127249 TTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCAT 127296
Score = 89.7 bits (98), Expect = 3e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | | ||| | |||||||||| || |||||||| ||||| ||||| |||
Sbjct 127298 CCACCACGTAGACGAAGAACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAATCAGAG 127357
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || || |||| || | ||| |||||||| || ||||||||||||||||| | ||
Sbjct 127358 AGAGTACGACCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGG 127417
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| || || || || || || || | || | ||| || | || ||
Sbjct 127418 ATGCCTTCCTTATCTTGGATCTT-TGCTTTTACGTTCTCAATGGTATCAGAAGCCTCGAC 127476
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752
|| | || || || || || || ||||| || || || |||||||| ||
Sbjct 127477 TTCCAGAGTTATGGTCTTCCCGGTCAACGTCTTCACGAAAATCTGCATGGT 127527
>seq9764
Length=1320143
Score = 102 bits (112), Expect = 5e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| |||| | ||| | |||| ||| || ||| |||||||| |||||||||||||||
Sbjct 199873 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 199814
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
||||| | |||| ||||| || || || || || |||||||| || ||||| | ||
Sbjct 199813 AGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 199754
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| |||||||| || || || | || |||| || | || || | ||||||
Sbjct 199753 ATGCCTTCTTTATCTTGGATCTT-GGCTTTGACATTCTCTATAGTATCAGAAGCTTCCAC 199695
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| ||||| || || | ||||| |||||||| |||||
Sbjct 199694 CTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647
Score = 102 bits (112), Expect = 5e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| |||| | ||| | |||| ||| || ||| |||||||| |||||||||||||||
Sbjct 200101 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200042
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
||||| | |||| |||| || || || || || |||||||| || ||||| | ||
Sbjct 200041 AGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 199982
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| |||||||| || || || |||| || | || | || || | ||| ||
Sbjct 199981 ATGCCTTCTTTATCTTGGATCTTGGCTTTC-ACGTTTTCTATTGTATCAGAGGCTTCAAC 199923
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| ||||| || || | |||||||| |||||||||||
Sbjct 199922 TTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 199875
Score = 102 bits (112), Expect = 5e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| |||| | ||| | |||| ||| || ||| |||||||| |||||||||||||||
Sbjct 200785 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200726
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
||||| | |||| |||| || || || || || |||||||| || ||||| | ||
Sbjct 200725 AGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 200666
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| |||||||| || || || |||| || | || | || || | ||| ||
Sbjct 200665 ATGCCTTCTTTATCTTGGATCTTGGCTTTC-ACGTTTTCTATTGTATCAGAGGCTTCAAC 200607
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| ||||| || || | |||||||| |||||||||||
Sbjct 200606 TTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 200559
Score = 98.7 bits (108), Expect = 7e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| |||| | ||| | |||| ||| || ||| |||||||| |||||||||||||||
Sbjct 200557 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200498
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
||||| | |||| |||| || || || || || |||||||| || ||||| | ||
Sbjct 200497 AGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 200438
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||||||||| || || ||| |||| || | || || | ||| ||
Sbjct 200437 ATGCCTTCTTTGTCTTGGATCTTGGCCTTC-ACATTTTCTATTGTATCAGAGGCTTCAAC 200379
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| ||||| || || | ||||| |||||||| |||||
Sbjct 200378 TTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCAT 200331
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| |||| | |||||| ||||| || ||||| ||||| || || ||||| || |||
Sbjct 201013 CCTCCTCGAAGACGTAAAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAG 200954
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
||||| | |||| ||||| || || || || || |||||||| || ||||| | ||
Sbjct 200953 AGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 200894
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||||||||| || || | | || | || | ||||| | ||| ||
Sbjct 200893 ATGCCTTCTTTGTCTTGGATCTT-GGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAAC 200835
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| ||||| || || | ||||| || |||||||||||
Sbjct 200834 TTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCAT 200787
Score = 89.7 bits (98), Expect = 3e-13
Identities = 151/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594
||||| || || || || ||| |||||||| ||||||||||| || || || | ||
Sbjct 201229 CGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCG 201170
Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654
|| |||| ||| || || || || || ||||| || |||||| | || | || ||||||
Sbjct 201169 TCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGGATTCCCTCTTTG 201110
Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713
|| |||||| | | || | || | |||||| | ||| || || | |||||
Sbjct 201109 TCCTGAATTTT-GGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGGGTGAT 201051
Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||||||| || | ||||| || || || |||||
Sbjct 201050 GGTTTTACCAGTAAGAGTTTTCACGAAAATTTGCAT 201015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328642390495680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |