Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq15293 141 2e-28 seq9764 134 3e-26 >seq15293 Length=768699 Score = 141 bits (156), Expect = 2e-28 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || ||||| ||||| ||||| || ||| |||||| Sbjct 125925 CAGATTTTCGTCAAGACTCTCACTGGTAAAACTATCACATTGGAGGTCGAAGCGTCTGAC 125866 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| ||| |||||||| |||||||| ||| || || || Sbjct 125865 ACGATCGAGAACGTGAAAGCGAAA-ATTCAAGATAAAGAAGGCATTCCTCCCGATCAACA 125807 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||||| || ||||| || || ||| |||| |||||| |||||||| |||| ||||| | Sbjct 125806 AAGACTGATTTTCGCGGGCAAACAGCTGGAGGATGGACGGACTTTGTCCGACTACAATAT 125747 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||| ||||| ||||||||||| | ||||| || Sbjct 125746 TCAAAAAGAATCTACACTTCACCTTGTACTTCGACTTAGA 125707 Score = 118 bits (130), Expect = 3e-21 Identities = 157/214 (73%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| ||||| || ||||| |||||| ||||||| ||| || ||||| | Sbjct 126148 TTTTGTCAAAACACTCACCGGCAAAACAATCACTCTGGAAGTCGAAGCATCGGACACGAT 126089 Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 ||| || ||||| ||| ||||| || ||||||||||| || || || ||| Sbjct 126088 TGAAAACGTGAAAGCTAAA-ATTCAGGACAAAGAAGGAATCCCTCCAGATCAGCAGAGAT 126030 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 | ||||| |||||||| ||| | ||||| || | || | | ||||| ||| | |||| Sbjct 126029 TGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACGCTTTCTGATTATAACATTCAGA 125970 Query 206357 AAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 | || ||||| || || | |||||||||||||| Sbjct 125969 AGGAATCTACCCTGCATTTGGTTTTGAGACTTCG 125936 Score = 107 bits (118), Expect = 5e-18 Identities = 140/190 (74%), Gaps = 3/190 (2%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||||||||| || ||||| |||||| ||||||| || || ||||| | Sbjct 126376 TTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCCGACACGAT 126317 Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 ||| || ||||| ||| |||||||| ||||||||||| || || || ||| Sbjct 126316 TGAAAACGTGAAAGCTAAA-ATTCAAGACAAAGAAGGAATCCCTCCAGATCAGCAGAGAT 126258 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 | || ||||||||||| ||| | ||||| || | || | | || |||||| |||||| Sbjct 126257 TAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAACATCCAGA 126198 Query 206357 AAGAGTCTAC 206366 | || ||||| Sbjct 126197 AGGAATCTAC 126188 Score = 102 bits (112), Expect = 2e-16 Identities = 139/190 (73%), Gaps = 3/190 (2%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||||||||| || ||||| |||||| ||||||| || || ||||| | Sbjct 126604 TTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCCGACACGAT 126545 Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 ||| || ||||| ||| |||||||| ||||||||||| || || || ||| Sbjct 126544 TGAAAACGTGAAAGCTAAA-ATTCAAGACAAAGAAGGAATCCCTCCAGATCAGCAGAGAT 126486 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 | || ||||||||||| ||| | ||||| || | || | | || |||||| |||||| Sbjct 126485 TAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAACATCCAGA 126426 Query 206357 AAGAGTCTAC 206366 | || || || Sbjct 126425 AGGAATCGAC 126416 Score = 102 bits (112), Expect = 2e-16 Identities = 139/190 (73%), Gaps = 3/190 (2%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||||||||| || ||||| |||||| ||||||| || || ||||| | Sbjct 126832 TTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCCGACACGAT 126773 Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 ||| || ||||| ||| |||||||| ||||||||||| || || || ||| Sbjct 126772 TGAAAACGTGAAAGCTAAA-ATTCAAGACAAAGAAGGAATCCCTCCAGATCAGCAGAGAT 126714 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 | || ||||||||||| ||| | ||||| || | || | | || |||||| |||||| Sbjct 126713 TAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAACATCCAGA 126654 Query 206357 AAGAGTCTAC 206366 | || || || Sbjct 126653 AGGAATCGAC 126644 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| || || |||||||| ||||| |||||||| || || || Sbjct 127065 CAAATCTTTGTCAAAACCCTGACGGGAAAAACTATCACGTTGGAAGTTGAGGCATCAGAT 127006 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||||||| |||||||| || |||||||| || || || Sbjct 127005 ACGATCGAAAATGTCAAAGCAAAA-ATTCAAGACAAGGAAGGAATCCCTCCAGATCAGCA 126947 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||| | || ||||||||||| ||| | ||||| || | || | | || |||||| | Sbjct 126946 GAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAACAT 126887 Query 206352 CCAGAAAGAGTCTAC 206366 |||||| || || || Sbjct 126886 CCAGAAGGAATCGAC 126872 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 || ||||| | ||||||||||| ||||| ||||| || | ||| ||||| | |||||| Sbjct 125707 TCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGACAAAGT 125766 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || |||||| |||||||| || || ||||| || || | ||||||| Sbjct 125767 CCGTCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGTCTTTGTTGA 125812 >seq9764 Length=1320143 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| ||||| | ||||| ||| ||||||||| | ||| Sbjct 200118 AAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTCTGACACAATAGAAAAC 200177 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| ||||| |||||||| ||| || || ||| | | |||||| Sbjct 200178 GTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAACAACGTTTGATCTTC 200237 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||||||||||| || ||||| | | || ||||| | |||||||| ||| Sbjct 200238 GCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCAGACTACAATATTCAGAAAGAATCT 200297 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||| | ||| || | |||||| Sbjct 200298 ACTCTTCACTTGGTTCTGCGTCTTCGA 200324 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| ||||| | ||||| ||| ||||||||| | ||| Sbjct 200802 AAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTCTGACACAATAGAAAAC 200861 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| ||||| |||||||| ||| || || ||| | | |||||| Sbjct 200862 GTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAACAACGTTTGATCTTC 200921 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||||||||||| || ||||| | | || ||||| | |||||||| ||| Sbjct 200922 GCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCAGACTACAATATTCAGAAAGAATCT 200981 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||| | ||||| | |||||| Sbjct 200982 ACTCTTCACTTGGTTTTACGTCTTCGA 201008 Score = 116 bits (128), Expect = 9e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| ||||| || || |||||| |||||| || | || Sbjct 199662 AAAACTCTTACTGGGAAAACCATCACCTTAGAGGTGGAAGCTTCTGATACTATAGAGAAT 199721 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| |||||||| ||| || || ||| | | ||||| Sbjct 199722 GTCAAAGCCAA-GATCCAAGATAAAGAAGGCATTCCTCCTGATCAACAACGTTTGATCTT 199780 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||||||||||| || || || | ||||||||||| | || ||||| || Sbjct 199781 CGCTGGTAAGCAGTTGGAAGACGGTAGAACACTCTCCGATTACAACATTCAAAAAGAATC 199840 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||| || ||| || | |||||| Sbjct 199841 CACACTTCATCTGGTTCTGCGTCTTCGA 199868 Score = 116 bits (128), Expect = 9e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| ||||| | ||||| ||| ||||| ||| | ||| Sbjct 199890 AAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTCTGATACAATAGAAAAC 199949 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| |||||||| ||| || || ||| | | ||||| Sbjct 199950 GTGAAAGCCAA-GATCCAAGATAAAGAAGGCATTCCTCCTGATCAACAACGTTTGATCTT 200008 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| ||||||| || || || | ||||||||||| | || ||||| || Sbjct 200009 CGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAACATTCAAAAAGAATC 200068 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||| || ||| || | |||||| Sbjct 200069 CACACTTCATCTGGTTCTGCGTCTTCGA 200096 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| ||||| | ||||| ||| ||||| ||| | ||| Sbjct 200346 AAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTCTGATACAATAGAAAAT 200405 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| |||||||| ||| || || ||| | | |||||| Sbjct 200406 GTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAACAACGTTTGATCTTC 200465 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| ||||||| || || || | ||||||||||| | || ||||| || Sbjct 200466 GCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAACATTCAAAAAGAATCC 200525 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||| || ||| || | |||||| Sbjct 200526 ACACTTCATCTGGTTCTGCGTCTTCGA 200552 Score = 116 bits (128), Expect = 9e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| ||||| | ||||| ||| ||||| ||| | ||| Sbjct 200574 AAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTCTGATACAATAGAAAAC 200633 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| |||||||| ||| || || ||| | | ||||| Sbjct 200634 GTGAAAGCCAA-GATCCAAGATAAAGAAGGCATTCCTCCTGATCAACAACGTTTGATCTT 200692 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| ||||||| || || || | ||||||||||| | || ||||| || Sbjct 200693 CGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAACATTCAAAAAGAATC 200752 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||| || ||| || | |||||| Sbjct 200753 CACACTTCATCTGGTTCTGCGTCTTCGA 200780 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||| | || ||| | |||||||||||| |||||||| | ||| ||||| | | || Sbjct 200324 TCGAAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGT 200265 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||| || ||||||| |||||| || |||||||| | ||||||||| Sbjct 200264 CCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGA 200219 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||| | ||||| | |||||||||||| |||||||| | ||| ||||| | | || Sbjct 201008 TCGAAGACGTAAAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGT 200949 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||| || ||||||| |||||| || |||||||| | ||||||||| Sbjct 200948 CCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGA 200903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181587929967059