Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq15293 141 2e-28
seq9764 134 3e-26
>seq15293
Length=768699
Score = 141 bits (156), Expect = 2e-28
Identities = 165/220 (75%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || ||||| || ||||| ||||| ||||| || ||| ||||||
Sbjct 125925 CAGATTTTCGTCAAGACTCTCACTGGTAAAACTATCACATTGGAGGTCGAAGCGTCTGAC 125866
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| |||| || ||||| ||| |||||||| |||||||| ||| || || ||
Sbjct 125865 ACGATCGAGAACGTGAAAGCGAAA-ATTCAAGATAAAGAAGGCATTCCTCCCGATCAACA 125807
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
|||||| || ||||| || || ||| |||| |||||| |||||||| |||| ||||| |
Sbjct 125806 AAGACTGATTTTCGCGGGCAAACAGCTGGAGGATGGACGGACTTTGTCCGACTACAATAT 125747
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391
|| ||||| ||||| ||||||||||| | ||||| ||
Sbjct 125746 TCAAAAAGAATCTACACTTCACCTTGTACTTCGACTTAGA 125707
Score = 118 bits (130), Expect = 3e-21
Identities = 157/214 (73%), Gaps = 3/214 (1%)
Strand=Plus/Minus
Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237
||||| |||||| ||||| || ||||| |||||| ||||||| ||| || ||||| |
Sbjct 126148 TTTTGTCAAAACACTCACCGGCAAAACAATCACTCTGGAAGTCGAAGCATCGGACACGAT 126089
Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296
||| || ||||| ||| ||||| || ||||||||||| || || || |||
Sbjct 126088 TGAAAACGTGAAAGCTAAA-ATTCAGGACAAAGAAGGAATCCCTCCAGATCAGCAGAGAT 126030
Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356
| ||||| |||||||| ||| | ||||| || | || | | ||||| ||| | ||||
Sbjct 126029 TGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACGCTTTCTGATTATAACATTCAGA 125970
Query 206357 AAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
| || ||||| || || | ||||||||||||||
Sbjct 125969 AGGAATCTACCCTGCATTTGGTTTTGAGACTTCG 125936
Score = 107 bits (118), Expect = 5e-18
Identities = 140/190 (74%), Gaps = 3/190 (2%)
Strand=Plus/Minus
Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237
||||| |||||||||||| || ||||| |||||| ||||||| || || ||||| |
Sbjct 126376 TTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCCGACACGAT 126317
Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296
||| || ||||| ||| |||||||| ||||||||||| || || || |||
Sbjct 126316 TGAAAACGTGAAAGCTAAA-ATTCAAGACAAAGAAGGAATCCCTCCAGATCAGCAGAGAT 126258
Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356
| || ||||||||||| ||| | ||||| || | || | | || |||||| ||||||
Sbjct 126257 TAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAACATCCAGA 126198
Query 206357 AAGAGTCTAC 206366
| || |||||
Sbjct 126197 AGGAATCTAC 126188
Score = 102 bits (112), Expect = 2e-16
Identities = 139/190 (73%), Gaps = 3/190 (2%)
Strand=Plus/Minus
Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237
||||| |||||||||||| || ||||| |||||| ||||||| || || ||||| |
Sbjct 126604 TTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCCGACACGAT 126545
Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296
||| || ||||| ||| |||||||| ||||||||||| || || || |||
Sbjct 126544 TGAAAACGTGAAAGCTAAA-ATTCAAGACAAAGAAGGAATCCCTCCAGATCAGCAGAGAT 126486
Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356
| || ||||||||||| ||| | ||||| || | || | | || |||||| ||||||
Sbjct 126485 TAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAACATCCAGA 126426
Query 206357 AAGAGTCTAC 206366
| || || ||
Sbjct 126425 AGGAATCGAC 126416
Score = 102 bits (112), Expect = 2e-16
Identities = 139/190 (73%), Gaps = 3/190 (2%)
Strand=Plus/Minus
Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237
||||| |||||||||||| || ||||| |||||| ||||||| || || ||||| |
Sbjct 126832 TTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCCGACACGAT 126773
Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296
||| || ||||| ||| |||||||| ||||||||||| || || || |||
Sbjct 126772 TGAAAACGTGAAAGCTAAA-ATTCAAGACAAAGAAGGAATCCCTCCAGATCAGCAGAGAT 126714
Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356
| || ||||||||||| ||| | ||||| || | || | | || |||||| ||||||
Sbjct 126713 TAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAACATCCAGA 126654
Query 206357 AAGAGTCTAC 206366
| || || ||
Sbjct 126653 AGGAATCGAC 126644
Score = 96.9 bits (106), Expect = 8e-15
Identities = 140/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
|| || ||| |||||| || || |||||||| ||||| |||||||| || || ||
Sbjct 127065 CAAATCTTTGTCAAAACCCTGACGGGAAAAACTATCACGTTGGAAGTTGAGGCATCAGAT 127006
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| ||||| || ||||||||| |||||||| || |||||||| || || ||
Sbjct 127005 ACGATCGAAAATGTCAAAGCAAAA-ATTCAAGACAAGGAAGGAATCCCTCCAGATCAGCA 126947
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
||| | || ||||||||||| ||| | ||||| || | || | | || |||||| |
Sbjct 126946 GAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAACAT 126887
Query 206352 CCAGAAAGAGTCTAC 206366
|||||| || || ||
Sbjct 126886 CCAGAAGGAATCGAC 126872
Score = 93.3 bits (102), Expect = 1e-13
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810
|| ||||| | ||||||||||| ||||| ||||| || | ||| ||||| | ||||||
Sbjct 125707 TCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGACAAAGT 125766
Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
|| |||||| |||||||| || || ||||| || || | |||||||
Sbjct 125767 CCGTCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGTCTTTGTTGA 125812
>seq9764
Length=1320143
Score = 134 bits (148), Expect = 3e-26
Identities = 154/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| ||||| || ||||| ||||| | ||||| ||| ||||||||| | |||
Sbjct 200118 AAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTCTGACACAATAGAAAAC 200177
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| ||||| |||||||| ||| || || ||| | | ||||||
Sbjct 200178 GTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAACAACGTTTGATCTTC 200237
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || |||||||||||||| || ||||| | | || ||||| | |||||||| |||
Sbjct 200238 GCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCAGACTACAATATTCAGAAAGAATCT 200297
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391
||||||||| | ||| || | ||||||
Sbjct 200298 ACTCTTCACTTGGTTCTGCGTCTTCGA 200324
Score = 134 bits (148), Expect = 3e-26
Identities = 154/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| ||||| || ||||| ||||| | ||||| ||| ||||||||| | |||
Sbjct 200802 AAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTCTGACACAATAGAAAAC 200861
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| ||||| |||||||| ||| || || ||| | | ||||||
Sbjct 200862 GTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAACAACGTTTGATCTTC 200921
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || |||||||||||||| || ||||| | | || ||||| | |||||||| |||
Sbjct 200922 GCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCAGACTACAATATTCAGAAAGAATCT 200981
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391
||||||||| | ||||| | ||||||
Sbjct 200982 ACTCTTCACTTGGTTTTACGTCTTCGA 201008
Score = 116 bits (128), Expect = 9e-21
Identities = 152/208 (73%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || || || ||||| ||||| || || |||||| |||||| || | ||
Sbjct 199662 AAAACTCTTACTGGGAAAACCATCACCTTAGAGGTGGAAGCTTCTGATACTATAGAGAAT 199721
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||||| || ||| ||||| |||||||| ||| || || ||| | | |||||
Sbjct 199722 GTCAAAGCCAA-GATCCAAGATAAAGAAGGCATTCCTCCTGATCAACAACGTTTGATCTT 199780
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||| || |||||||||||||| || || || | ||||||||||| | || ||||| ||
Sbjct 199781 CGCTGGTAAGCAGTTGGAAGACGGTAGAACACTCTCCGATTACAACATTCAAAAAGAATC 199840
Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391
|| ||||| || ||| || | ||||||
Sbjct 199841 CACACTTCATCTGGTTCTGCGTCTTCGA 199868
Score = 116 bits (128), Expect = 9e-21
Identities = 152/208 (73%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| ||||| || ||||| ||||| | ||||| ||| ||||| ||| | |||
Sbjct 199890 AAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTCTGATACAATAGAAAAC 199949
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||||| || ||| ||||| |||||||| ||| || || ||| | | |||||
Sbjct 199950 GTGAAAGCCAA-GATCCAAGATAAAGAAGGCATTCCTCCTGATCAACAACGTTTGATCTT 200008
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||| || |||||| ||||||| || || || | ||||||||||| | || ||||| ||
Sbjct 200009 CGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAACATTCAAAAAGAATC 200068
Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391
|| ||||| || ||| || | ||||||
Sbjct 200069 CACACTTCATCTGGTTCTGCGTCTTCGA 200096
Score = 116 bits (128), Expect = 9e-21
Identities = 150/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| ||||| || ||||| ||||| | ||||| ||| ||||| ||| | |||
Sbjct 200346 AAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTCTGATACAATAGAAAAT 200405
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| ||||| |||||||| ||| || || ||| | | ||||||
Sbjct 200406 GTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAACAACGTTTGATCTTC 200465
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || |||||| ||||||| || || || | ||||||||||| | || ||||| ||
Sbjct 200466 GCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAACATTCAAAAAGAATCC 200525
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391
|| ||||| || ||| || | ||||||
Sbjct 200526 ACACTTCATCTGGTTCTGCGTCTTCGA 200552
Score = 116 bits (128), Expect = 9e-21
Identities = 152/208 (73%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| ||||| || ||||| ||||| | ||||| ||| ||||| ||| | |||
Sbjct 200574 AAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTCTGATACAATAGAAAAC 200633
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||||| || ||| ||||| |||||||| ||| || || ||| | | |||||
Sbjct 200634 GTGAAAGCCAA-GATCCAAGATAAAGAAGGCATTCCTCCTGATCAACAACGTTTGATCTT 200692
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||| || |||||| ||||||| || || || | ||||||||||| | || ||||| ||
Sbjct 200693 CGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAACATTCAAAAAGAATC 200752
Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391
|| ||||| || ||| || | ||||||
Sbjct 200753 CACACTTCATCTGGTTCTGCGTCTTCGA 200780
Score = 93.3 bits (102), Expect = 1e-13
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810
|||||| | || ||| | |||||||||||| |||||||| | ||| ||||| | | ||
Sbjct 200324 TCGAAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGT 200265
Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
||| || ||||||| |||||| || |||||||| | |||||||||
Sbjct 200264 CCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGA 200219
Score = 93.3 bits (102), Expect = 1e-13
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810
|||||| | ||||| | |||||||||||| |||||||| | ||| ||||| | | ||
Sbjct 201008 TCGAAGACGTAAAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGT 200949
Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
||| || ||||||| |||||| || |||||||| | |||||||||
Sbjct 200948 CCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGA 200903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181587929967059
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