Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq9764 109 5e-19 seq15293 107 2e-18 seq10177 96.9 3e-15 >seq9764 Length=1320143 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| ||| | | || ||||||||||||||||| ||| | || | Sbjct 200089 CGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCG 200030 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | |||| | ||| |||||||| ||||| |||||||||||| Sbjct 200029 TCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTA 199970 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||||| | ||| | ||||| | | || ||||| | || | Sbjct 199969 TCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATG 199910 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| |||||||||| ||| |||||||| Sbjct 199909 GTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 199875 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| ||| | | || ||||||||||||||||| ||| | || | Sbjct 200773 CGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCG 200714 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | |||| | ||| |||||||| ||||| |||||||||||| Sbjct 200713 TCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTA 200654 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||||| | ||| | ||||| | | || ||||| | || | Sbjct 200653 TCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATG 200594 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| |||||||||| ||| |||||||| Sbjct 200593 GTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 200559 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| ||| | | || ||||||||||||||||| ||| | || | Sbjct 199861 CGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCG 199802 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||| ||||| | |||| | ||| |||||||| ||||| |||||||||||| Sbjct 199801 TCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTA 199742 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||| | | || | |||||| | | ||||| || | || | Sbjct 199741 TCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACCTCTAAGGTGATG 199682 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGA 132125 ||||| ||||| |||||||| | || || ||||||| Sbjct 199681 GTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCATGA 199645 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| ||| | | || ||||||||||||||||| ||| | || | Sbjct 200545 CGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCG 200486 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | |||| | ||| |||||||| ||||| ||||||||||| Sbjct 200485 TCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTG 200426 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | ||| | ||||| | | || ||||||| || | Sbjct 200425 TCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAACTTCGAGGGTGATG 200366 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| |||||||| | || || ||||| Sbjct 200365 GTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCAT 200331 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || ||||| || || | | || |||||||| |||||||| || | || | Sbjct 201229 CGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCG 201170 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || || || | |||||| ||| |||||||||||||| || || ||||| Sbjct 201169 TCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGGATTCCCTCTTTG 201110 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || | | ||| | || || | | || ||||||| || | Sbjct 201109 TCCTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGGGTGATG 201050 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| |||||||| | |||||| ||||| Sbjct 201049 GTTTTACCAGTAAGAGTTTTCACGAAAATTTGCAT 201015 >seq15293 Length=768699 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| ||||||||| || || || ||| || |||||||| || | Sbjct 125735 GATTCTTTTTGAATATTGTAGTCGGACAAAGTCCGTCCATCCTCCAGCTGTTTGCCCGCG 125794 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | |||||||| ||||| |||||||||||||| |||||| ||||| Sbjct 125795 AAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGAATTTTCGCTTTCACG 125854 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | || || || || | || | ||||||||||| ||||| || Sbjct 125855 TTCTCGATCGTGTCAGACGCTTCGACCTCCAATGTGATAGTTTTACCAGTGAGAGTCTTG 125914 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 125915 ACGAAAATCTGCAT 125928 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||||| | | || |||||||||||||| || || | ||||| ||||| Sbjct 127087 AACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGGCCGTCTTC 127146 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || || || |||| |||| | |||||| ||||| || || |||||||| || || Sbjct 127147 AAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTGTCCTG 127206 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | ||| | ||||| | | ||| ||||| | ||| | ||||| Sbjct 127207 AATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTT 127266 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| ||||| | || || ||||| Sbjct 127267 TCCCGTCAGGGTTTTGACAAAGATTTGCAT 127296 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||||| | |||| |||||||||||||| || || | ||||| ||||| Sbjct 127315 AACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGACCGTCTTC 127374 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || || || |||| |||| | |||||| ||||| || || |||||||| ||||| Sbjct 127375 AAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTG 127434 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || ||| ||| | | || | ||||| | | ||| ||||| | || | || || Sbjct 127435 GATCTTTGCTTTTACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAGAGTTATGGTCTT 127494 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || |||| || || | ||||||||||||| Sbjct 127495 CCCGGTCAACGTCTTCACGAAAATCTGCATG 127525 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| || || | ||||||||| | | || || || || ||||||||||| | || Sbjct 126163 ACGTAAACGGAGAACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGTGT 126222 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| |||||||| |||| | |||| | ||| ||||||||||| || || Sbjct 126223 GCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCC 126282 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || |||||| ||||| | ||| | || |||| | ||| ||||| | Sbjct 126283 TTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAG 126342 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| || || || ||||| | ||||| ||||| Sbjct 126343 AGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126384 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| || || | ||||||||| | | || || || || ||||||||||| | || Sbjct 126391 ACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGT 126450 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| |||||||| |||| | |||| | ||| ||||||||||| || || Sbjct 126451 GCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCC 126510 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || |||||| ||||| | ||| | || |||| | ||| ||||| | Sbjct 126511 TTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAG 126570 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| || || || ||||| | ||||| ||||| Sbjct 126571 AGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126612 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| || || | ||||||||| | | || || || || ||||||||||| | || Sbjct 126619 ACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGT 126678 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| |||||||| |||| | |||| | ||| ||||||||||| || || Sbjct 126679 GCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCC 126738 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || |||||| ||||| | ||| | || |||| | ||| ||||| | Sbjct 126739 TTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAG 126798 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| || || || ||||| | ||||| ||||| Sbjct 126799 AGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126840 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| || || | ||||||||| | | || || || || ||||||||||| | || Sbjct 126847 ACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGT 126906 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||||| |||||||| |||| | |||| | ||| ||||||||||| || || Sbjct 126907 GCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCC 126966 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||||||| ||| | | ||| | ||||| | | ||| ||||| | Sbjct 126967 TTCCTTGTCTTGAATTTTTGCTTTGACATTTTCGATCGTATCTGATGCCTCAACTTCCAA 127026 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||||| || ||||| ||||| | || || ||||| Sbjct 127027 CGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCAT 127068 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 |||||||||||| | | | || || || |||||||| || || | || || || Sbjct 125944 CAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTGCGGCCGTC 126003 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| |||||||| |||| | |||| | | ||| ||||||||||| || |||||||| || Sbjct 126004 TTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTC 126063 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 |||||| ||||| | ||| | || || | | || ||||| | || | || Sbjct 126064 CTGAATTTTAGCTTTCACGTTTTCAATCGTGTCCGATGCTTCGACTTCCAGAGTGATTGT 126123 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || || || ||||| | ||||| ||||| Sbjct 126124 TTTGCCGGTGAGTGTTTTGACAAAAATTTGCAT 126156 >seq10177 Length=3058365 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||||||||| ||||| ||| || ||||| ||| || |||||||| || | ||| Sbjct 2346113 CTTTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 2346172 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | || |||||||||||||| || || ||||| || || || || || | | | Sbjct 2346173 TGAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 2346232 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | ||||||| | ||| || |||| || | |||||||| || || ||||| | || Sbjct 2346233 CGATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGA 2346292 Query 132114 AAATCTGCATG 132124 ||||||||||| Sbjct 2346293 AAATCTGCATG 2346303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476519577454440