Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq15293 113 4e-20
seq10371 111 1e-19
seq9764 107 2e-18
>seq15293
Length=768699
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || || || || | || || ||| | ||||| | || ||||||||
Sbjct 125928 ATGCAGATTTTCGTCAAGACTCTCACTGGTAAAACTATCACATTGGAGGTCGAAGCGTCT 125869
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || |||||| | || ||| |||||| |||||||| || || || ||||||||
Sbjct 125868 GACACGATCGAGAACGTGAAAGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAA 125809
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|||||||| |||| || |||||||| || || |||| | | | | ||| ||||||
Sbjct 125808 CAAAGACTGATTTTCGCGGGCAAACAGCTGGAGGATGGACGGACTTTGTCCGACTACAAT 125749
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404
|||||||||||||| || |||| | || | || | ||||| |||||
Sbjct 125748 ATTCAAAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGGCGGAAA 125699
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| ||||| | || |||||| | |||||| | ||||| || ||
Sbjct 127296 ATGCAAATCTTTGTCAAAACCCTGACGGGAAAAACTATCACGTTGGAAGTTGAGGCATCA 127237
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| ||||| | || ||| |||||| || || || || || || || ||||||
Sbjct 127236 GATACGATCGAAAACGTCAAAGCCAAAATTCAGGACAAGGAAGGCATCCCACCTGATCAG 127177
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| | | || | || ||| || ||||| ||||| | | | | || ||||| ||
Sbjct 127176 CAGCGTTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCCGTACTCTCTCTGATTATAAC 127117
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383
|||||||||||||| ||| | ||||| ||
Sbjct 127116 ATTCAAAAAGAATCGACCTTACATTTGGT 127088
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| |||||| | ||||| ||| | ||||| | |||||||||||
Sbjct 126156 ATGCAAATTTTTGTCAAAACACTCACCGGCAAAACAATCACTCTGGAAGTCGAAGCATCG 126097
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || || || | || ||| |||||| || ||||| || || || || ||||||
Sbjct 126096 GACACGATTGAAAACGTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCAGATCAG 126037
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
|| ||| | || | | ||| ||||| || ||||| | | | | ||||| ||
Sbjct 126036 CAGAGATTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACGCTTTCTGATTATAAC 125977
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390
||||| || ||||| ||| | ||||| || || |||
Sbjct 125976 ATTCAGAAGGAATCTACCCTGCATTTGGTTTTGAGA 125941
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230
|| |||||| | || || || || || ||||| || | || || | |||||||| ||
Sbjct 127528 CACCATGCAGATTTTCGTGAAGACGTTGACCGGGAAGACCATAACTCTGGAAGTCGAGGC 127469
Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290
||||| || ||| | |||||| ||| || ||||| || || || || || ||
Sbjct 127468 TTCTGATACCATTGAGAACGTAAAAGCAAAGATCCAAGATAAGGAAGGCATCCCACCTGA 127409
Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350
|||||| | | || | || ||| || ||||| ||||| | | | | | || |||||
Sbjct 127408 TCAGCAGCGTTTGATCTTCGCCGGAAAGCAACTTGAAGACGGTCGTACTCTCTCTGATTA 127349
Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGT 25383
|| |||||||||||||| ||| | ||||| ||
Sbjct 127348 TAACATTCAAAAAGAATCAACCTTACATTTGGT 127316
>seq10371
Length=124667
Score = 111 bits (122), Expect = 1e-19
Identities = 226/333 (68%), Gaps = 2/333 (1%)
Strand=Plus/Plus
Query 137382 AATACCGATACCGATAGGTCTGTGTTTAAAATTTGATATTTGAGCGCTAACAAGCGGATA 137441
|||| | |||| |||||||||||| || ||| ||| ||| | | | |||||
Sbjct 63130 AATAATGTTACCAATAGGTCTGTGTCTACGATTAGATGTTTTCGTTTCTTCGATAGGATA 63189
Query 137442 AAAGTTTGCGTCTATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAG 137501
|||||| |||| || | | ||| ||||| |||||||| | | | ||| | | ||
Sbjct 63190 AAAGTTAACGTCGATGACTTTATCTAGATTACGAGTAACGATTTTCGCGACTGTTTTAAG 63249
Query 137502 CAATTCGAAATCGAAGCTTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGC 137561
|| |||||||| |||| | | | | ||| |||| | ||||| || ||||| ||
Sbjct 63250 TTTATCAAAATCGAAAGTTTTCGTGTCTGTATTAACAAACATGTTGACAGCGATAGATGC 63309
Query 137562 TAAGTTGCATACGGCCGTTTCTGTATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATT 137621
||| || || || || |||| | || ||||| |||||||||| ||| | ||
Sbjct 63310 TAAATTACACACAGCGACTTCTCCAGGACCGGAGTATTCAACAATTTCGGTGCACAAGTT 63369
Query 137622 GCTGTTTCGGATCACTCCCAAATTCTTTTGATT-GTTTTTCTCGTTGACGTGATCTTTAT 137680
|||| | ||| || | || || ||||| | ||||| ||| ||||||||||
Sbjct 63370 GCTGCATTTGATAGTGCCTATATGCTGATGATTCGATTTTC-GATTGCAATGATCTTTAT 63428
Query 137681 ATATCATATACGGAGTTCCGGTTTCGACTTGAG 137713
| | |||||| || ||||||||||| |||||||
Sbjct 63429 AAAGCATATAAGGTGTTCCGGTTTCTACTTGAG 63461
>seq9764
Length=1320143
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || ||||| | || || ||| | ||||| |||||||||||||
Sbjct 201015 ATGCAAATTTTCGTGAAAACTCTTACTGGTAAAACCATCACCCTCGAAGTCGAAGCTTCA 201074
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || || || | ||||| |||||| || |||||||| || || || |||||
Sbjct 201075 GACACCATTGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATCCCTCCAGATCAA 201134
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||| | | || | || ||||| ||||| ||||| | |||| | | ||||||||
Sbjct 201135 CAACGTTTAATCTTCGCTGGCAAGCAACTGGAAGACGGCAGAACTCTTTCTGATTACAAC 201194
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
|| |||||||||||||| | || ||||| ||| || | | |||||
Sbjct 201195 ATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGG 201241
Score = 102 bits (112), Expect = 7e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || |||||||| | || || ||| | ||||| | ||||| ||||||
Sbjct 199875 ATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTCT 199934
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| || || | || ||| || || |||||||| || || || || |||||
Sbjct 199935 GATACAATAGAAAACGTGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCAA 199994
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||| | | || | || ||||| || || ||||| | ||||| || |||||||||
Sbjct 199995 CAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAAC 200054
Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378
||||||||||||||||| |||||
Sbjct 200055 ATTCAAAAAGAATCCACACTTCAT 200078
Score = 102 bits (112), Expect = 7e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | ||||| ||||| | || || ||| | ||||| ||||||| ||||||
Sbjct 200331 ATGCAAATCTTTGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTCT 200390
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| || || | || || || || || ||||| || || || || |||||
Sbjct 200391 GATACAATAGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAA 200450
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||| | | || | || ||||| || || ||||| | ||||| || |||||||||
Sbjct 200451 CAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAAC 200510
Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378
||||||||||||||||| |||||
Sbjct 200511 ATTCAAAAAGAATCCACACTTCAT 200534
Score = 102 bits (112), Expect = 7e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | || |||||||| | || || ||| | ||||| | ||||| ||||||
Sbjct 200559 ATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTCT 200618
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| || || | || ||| || || |||||||| || || || || |||||
Sbjct 200619 GATACAATAGAAAACGTGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCAA 200678
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||| | | || | || ||||| || || ||||| | ||||| || |||||||||
Sbjct 200679 CAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAAC 200738
Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378
||||||||||||||||| |||||
Sbjct 200739 ATTCAAAAAGAATCCACACTTCAT 200762
Score = 100 bits (110), Expect = 3e-16
Identities = 147/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230
|| ||||||| | ||||| ||||| | || || ||| | ||||| | || || |||||
Sbjct 199643 CATCATGCAAATCTTTGTGAAAACTCTTACTGGGAAAACCATCACCTTAGAGGTGGAAGC 199702
Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290
|||||||| ||| | || ||| || || |||||||| || || || || ||
Sbjct 199703 TTCTGATACTATAGAGAATGTCAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGA 199762
Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350
||| ||| | | || | || || || || | ||||| | ||||| || ||||||
Sbjct 199763 TCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACACTCTCCGATTA 199822
Query 25351 CAATATTCAAAAAGAATCCACCATTCAT 25378
||| ||||||||||||||||| |||||
Sbjct 199823 CAACATTCAAAAAGAATCCACACTTCAT 199850
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445008836165280
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