Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq15293 113 4e-20 seq10371 111 1e-19 seq9764 107 2e-18 >seq15293 Length=768699 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | || || ||| | ||||| | || |||||||| Sbjct 125928 ATGCAGATTTTCGTCAAGACTCTCACTGGTAAAACTATCACATTGGAGGTCGAAGCGTCT 125869 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || ||| |||||| |||||||| || || || |||||||| Sbjct 125868 GACACGATCGAGAACGTGAAAGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAA 125809 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| |||| || |||||||| || || |||| | | | | ||| |||||| Sbjct 125808 CAAAGACTGATTTTCGCGGGCAAACAGCTGGAGGATGGACGGACTTTGTCCGACTACAAT 125749 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 |||||||||||||| || |||| | || | || | ||||| ||||| Sbjct 125748 ATTCAAAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGGCGGAAA 125699 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || |||||| | |||||| | ||||| || || Sbjct 127296 ATGCAAATCTTTGTCAAAACCCTGACGGGAAAAACTATCACGTTGGAAGTTGAGGCATCA 127237 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| |||||| || || || || || || || |||||| Sbjct 127236 GATACGATCGAAAACGTCAAAGCCAAAATTCAGGACAAGGAAGGCATCCCACCTGATCAG 127177 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | || | || ||| || ||||| ||||| | | | | || ||||| || Sbjct 127176 CAGCGTTTGATCTTCGCCGGAAAGCAACTTGAAGACGGCCGTACTCTCTCTGATTATAAC 127117 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||||||||| ||| | ||||| || Sbjct 127116 ATTCAAAAAGAATCGACCTTACATTTGGT 127088 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||| | ||||| ||| | ||||| | ||||||||||| Sbjct 126156 ATGCAAATTTTTGTCAAAACACTCACCGGCAAAACAATCACTCTGGAAGTCGAAGCATCG 126097 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| |||||| || ||||| || || || || |||||| Sbjct 126096 GACACGATTGAAAACGTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCAGATCAG 126037 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | || | | ||| ||||| || ||||| | | | | ||||| || Sbjct 126036 CAGAGATTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACGCTTTCTGATTATAAC 125977 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||||| || ||||| ||| | ||||| || || ||| Sbjct 125976 ATTCAGAAGGAATCTACCCTGCATTTGGTTTTGAGA 125941 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | || || || || || ||||| || | || || | |||||||| || Sbjct 127528 CACCATGCAGATTTTCGTGAAGACGTTGACCGGGAAGACCATAACTCTGGAAGTCGAGGC 127469 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||||| || ||| | |||||| ||| || ||||| || || || || || || Sbjct 127468 TTCTGATACCATTGAGAACGTAAAAGCAAAGATCCAAGATAAGGAAGGCATCCCACCTGA 127409 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||| | | || | || ||| || ||||| ||||| | | | | | || ||||| Sbjct 127408 TCAGCAGCGTTTGATCTTCGCCGGAAAGCAACTTGAAGACGGTCGTACTCTCTCTGATTA 127349 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 || |||||||||||||| ||| | ||||| || Sbjct 127348 TAACATTCAAAAAGAATCAACCTTACATTTGGT 127316 >seq10371 Length=124667 Score = 111 bits (122), Expect = 1e-19 Identities = 226/333 (68%), Gaps = 2/333 (1%) Strand=Plus/Plus Query 137382 AATACCGATACCGATAGGTCTGTGTTTAAAATTTGATATTTGAGCGCTAACAAGCGGATA 137441 |||| | |||| |||||||||||| || ||| ||| ||| | | | ||||| Sbjct 63130 AATAATGTTACCAATAGGTCTGTGTCTACGATTAGATGTTTTCGTTTCTTCGATAGGATA 63189 Query 137442 AAAGTTTGCGTCTATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAG 137501 |||||| |||| || | | ||| ||||| |||||||| | | | ||| | | || Sbjct 63190 AAAGTTAACGTCGATGACTTTATCTAGATTACGAGTAACGATTTTCGCGACTGTTTTAAG 63249 Query 137502 CAATTCGAAATCGAAGCTTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGC 137561 || |||||||| |||| | | | | ||| |||| | ||||| || ||||| || Sbjct 63250 TTTATCAAAATCGAAAGTTTTCGTGTCTGTATTAACAAACATGTTGACAGCGATAGATGC 63309 Query 137562 TAAGTTGCATACGGCCGTTTCTGTATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATT 137621 ||| || || || || |||| | || ||||| |||||||||| ||| | || Sbjct 63310 TAAATTACACACAGCGACTTCTCCAGGACCGGAGTATTCAACAATTTCGGTGCACAAGTT 63369 Query 137622 GCTGTTTCGGATCACTCCCAAATTCTTTTGATT-GTTTTTCTCGTTGACGTGATCTTTAT 137680 |||| | ||| || | || || ||||| | ||||| ||| |||||||||| Sbjct 63370 GCTGCATTTGATAGTGCCTATATGCTGATGATTCGATTTTC-GATTGCAATGATCTTTAT 63428 Query 137681 ATATCATATACGGAGTTCCGGTTTCGACTTGAG 137713 | | |||||| || ||||||||||| ||||||| Sbjct 63429 AAAGCATATAAGGTGTTCCGGTTTCTACTTGAG 63461 >seq9764 Length=1320143 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | || || ||| | ||||| ||||||||||||| Sbjct 201015 ATGCAAATTTTCGTGAAAACTCTTACTGGTAAAACCATCACCCTCGAAGTCGAAGCTTCA 201074 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | ||||| |||||| || |||||||| || || || ||||| Sbjct 201075 GACACCATTGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATCCCTCCAGATCAA 201134 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | || ||||| ||||| ||||| | |||| | | |||||||| Sbjct 201135 CAACGTTTAATCTTCGCTGGCAAGCAACTGGAAGACGGCAGAACTCTTTCTGATTACAAC 201194 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || |||||||||||||| | || ||||| ||| || | | ||||| Sbjct 201195 ATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGG 201241 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || |||||||| | || || ||| | ||||| | ||||| |||||| Sbjct 199875 ATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTCT 199934 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| || || |||||||| || || || || ||||| Sbjct 199935 GATACAATAGAAAACGTGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCAA 199994 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | || ||||| || || ||||| | ||||| || ||||||||| Sbjct 199995 CAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAAC 200054 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 ||||||||||||||||| ||||| Sbjct 200055 ATTCAAAAAGAATCCACACTTCAT 200078 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || || ||| | ||||| ||||||| |||||| Sbjct 200331 ATGCAAATCTTTGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTCT 200390 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || || || || ||||| || || || || ||||| Sbjct 200391 GATACAATAGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCAA 200450 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | || ||||| || || ||||| | ||||| || ||||||||| Sbjct 200451 CAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAAC 200510 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 ||||||||||||||||| ||||| Sbjct 200511 ATTCAAAAAGAATCCACACTTCAT 200534 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || |||||||| | || || ||| | ||||| | ||||| |||||| Sbjct 200559 ATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTCT 200618 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| || || |||||||| || || || || ||||| Sbjct 200619 GATACAATAGAAAACGTGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCAA 200678 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | || ||||| || || ||||| | ||||| || ||||||||| Sbjct 200679 CAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAAC 200738 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 ||||||||||||||||| ||||| Sbjct 200739 ATTCAAAAAGAATCCACACTTCAT 200762 Score = 100 bits (110), Expect = 3e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || ||||||| | ||||| ||||| | || || ||| | ||||| | || || ||||| Sbjct 199643 CATCATGCAAATCTTTGTGAAAACTCTTACTGGGAAAACCATCACCTTAGAGGTGGAAGC 199702 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 |||||||| ||| | || ||| || || |||||||| || || || || || Sbjct 199703 TTCTGATACTATAGAGAATGTCAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGA 199762 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||| ||| | | || | || || || || | ||||| | ||||| || |||||| Sbjct 199763 TCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACACTCTCCGATTA 199822 Query 25351 CAATATTCAAAAAGAATCCACCATTCAT 25378 ||| ||||||||||||||||| ||||| Sbjct 199823 CAACATTCAAAAAGAATCCACACTTCAT 199850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445008836165280