Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq9764 93.3 3e-14 >seq9764 Length=1320143 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||| ||||| | ||||| || ||||| ||| | ||| ||| || Sbjct 200330 AATGCAAATCTTTGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200389 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | | | | ||||| || || |||||||||||| | || |||||| Sbjct 200390 TGATACAATAGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 200449 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||| | | || | || ||||| || | ||||| || ||| | ||||||||| Sbjct 200450 ACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAA 200509 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||| ||||||||||| ||||| ||| | || || | | ||||||||| Sbjct 200510 CATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGA 200558 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || || || ||||| | ||||| || ||||| ||| | ||| ||| || Sbjct 199874 AATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTC 199933 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | | | | |||||| || || || ||||||||| | || |||||| Sbjct 199934 TGATACAATAGAAAACGTGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCA 199993 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||| | | || | || ||||| || | ||||| || ||| | ||||||||| Sbjct 199994 ACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAA 200053 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||| ||||||||||| ||||| ||| | || || | | ||||||||| Sbjct 200054 CATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGA 200102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || || || ||||| | ||||| || ||||| ||| | ||| ||| || Sbjct 200558 AATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTC 200617 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | | | | |||||| || || || ||||||||| | || |||||| Sbjct 200618 TGATACAATAGAAAACGTGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCA 200677 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||| | | || | || ||||| || | ||||| || ||| | ||||||||| Sbjct 200678 ACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAA 200737 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||| ||||||||||| ||||| ||| | || || | | ||||||||| Sbjct 200738 CATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGA 200786 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| ||||| | ||||| || ||||| ||| | || ||| | Sbjct 199647 ATGCAAATCTTTGTGAAAACTCTTACTGGGAAAACCATCACCTTAGAGGTGGAAGCTTCT 199706 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || | | | || ||| || || || ||||||||| | || ||||||| Sbjct 199707 GATACTATAGAGAATGTCAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCAA 199766 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | || || || || || ||||| || ||| | |||||||||| Sbjct 199767 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACACTCTCCGATTACAAC 199826 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || ||||||||||| ||||| ||| | || || | | ||||||||| Sbjct 199827 ATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGA 199874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402254190734432