Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq15293 114 1e-20
seq9764 109 5e-19
seq10177 91.5 1e-13
>seq15293
Length=768699
Score = 114 bits (126), Expect = 1e-20
Identities = 166/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567
|||||||||||| | | ||||||||||| || || ||||||||||| ||||| |
Sbjct 127068 TTCCACCACGTAGACGAAGAACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAG 127127
Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627
| || || |||| || || ||||| || || || ||||| |||||||| || | |
Sbjct 127128 AGAGAGTACGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTG 127187
Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686
| | || ||||||||| ||| ||| || || | || | | ||| || | ||
Sbjct 127188 GGATGCCTTCCTTGTCC-TGAATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCA 127246
Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738
|| |||| |||||| ||||| ||||||| ||||| ||||| || |||||||
Sbjct 127247 ACTTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCATTC 127298
Score = 102 bits (112), Expect = 7e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
||||||||||| | | |||||||| || || ||||| || |||||||| || |
Sbjct 126842 CCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAA 126901
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || |||| || ||||| || || || || || || | |||||| || | |||
Sbjct 126902 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGG 126961
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688
| | ||||||| | ||| |||||| || | | || | | ||| || | || ||
Sbjct 126962 ATTCCTTCCTTGT-CTTGAATTTTTGCTTTGACATTTTCGATCGTATCTGATGCCTCAAC 127020
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738
|||| |||||| ||||| ||||||| ||||| ||||| || |||||||
Sbjct 127021 TTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCATTC 127070
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
||||||||||| | | |||||||| || ||| ||||| || |||||||| || |
Sbjct 126158 CCACCACGTAAACGGAGAACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAGAA 126217
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || |||| || ||||| || || || || || || | |||||| || | |||
Sbjct 126218 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGG 126277
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688
| | || |||| | ||| ||| || |||| || | | ||||||| | || ||
Sbjct 126278 ATTCCTTCTTTGT-CTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAAC 126336
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| ||||| || || | ||||| ||||| || |||||
Sbjct 126337 TTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126384
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567
|||||||||||| | | ||||||||||| || || ||||||||||| ||||| |
Sbjct 127296 TTCCACCACGTAGACGAAGAACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAATCAG 127355
Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627
| || || |||| || || ||||| || || || ||||| |||||||| || | |
Sbjct 127356 AGAGAGTACGACCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTG 127415
Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCC 35686
| | || ||||| || |||| ||||||| ||| | | || || | ||
Sbjct 127416 GGATGCCTTCCTTATCTTGGATC-TTTGCTTTTACGTTCTCAATGGTATCAGAAGCCTCG 127474
Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| |||| || || || || || ||||| || ||||| || ||||||||
Sbjct 127475 ACTTCCAGAGTTATGGTCTTCCCGGTCAACGTCTTCACGAAAATCTGCAT 127524
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
||||||||||| | | |||||||| || || ||||| || |||||||| || |
Sbjct 126386 CCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAA 126445
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || |||| || ||||| || || || || || || | |||||| || | |||
Sbjct 126446 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGG 126505
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688
| | || |||| | ||| ||| || |||| || | | ||||||| | || ||
Sbjct 126506 ATTCCTTCTTTGT-CTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAAC 126564
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| ||||| || || | ||||| ||||| || |||||
Sbjct 126565 TTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126612
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
||||||||||| | | |||||||| || || ||||| || |||||||| || |
Sbjct 126614 CCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAA 126673
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
| || || |||| || ||||| || || || || || || | |||||| || | |||
Sbjct 126674 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGG 126733
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688
| | || |||| | ||| ||| || |||| || | | ||||||| | || ||
Sbjct 126734 ATTCCTTCTTTGT-CTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAAC 126792
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| ||||| ||||| || || | ||||| ||||| || |||||
Sbjct 126793 TTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126840
>seq9764
Length=1320143
Score = 109 bits (120), Expect = 5e-19
Identities = 140/193 (73%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|| ||||||||||||||||||| | |||| |||| ||||||||||| || || ||
Sbjct 200521 TCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAG 200462
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
||||| || || || || | ||||| || || ||||| |||||| ||||| | ||
Sbjct 200461 ATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTT 200402
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | || || | ||| || || | ||||| ||||| || || | ||||||||||
Sbjct 200401 TCTATTGTATCAGAGGCTTCAACTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACA 200342
Query 35726 AATATCTGCATTC 35738
|| || |||||||
Sbjct 200341 AAGATTTGCATTC 200329
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|| ||||||||||||||||||| | |||| |||| |||| ||||||||| || ||
Sbjct 199837 TCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAG 199778
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
||||| || || || || | ||||| || || || || |||||| || | | |
Sbjct 199777 ATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGGATCTTGGCTTTGACATTC 199718
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | || || | ||||||||| | ||||| ||||| || || | ||||||||||
Sbjct 199717 TCTATAGTATCAGAAGCTTCCACCTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACA 199658
Query 35726 AATATCTGCAT 35736
|| || |||||
Sbjct 199657 AAGATTTGCAT 199647
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|| ||||||||||||||||||| | |||| |||| ||||||||||| || || ||
Sbjct 200065 TCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAG 200006
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
||||| || || || || | ||||| || || || || |||||| |||| ||
Sbjct 200005 ATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTT 199946
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | || || | ||| || || | ||||| ||||| || || | |||||| ||
Sbjct 199945 TCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACG 199886
Query 35726 AATATCTGCATTC 35738
|| ||||||||||
Sbjct 199885 AAGATCTGCATTC 199873
Score = 91.5 bits (100), Expect = 1e-13
Identities = 136/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|| ||||||||||||||||||| | |||| |||| ||||||||||| || || ||
Sbjct 200749 TCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAG 200690
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665
||||| || || || || | ||||| || || || || |||||| |||| ||
Sbjct 200689 ATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTT 200630
Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | || || | ||| || || | ||||| ||||| || || | |||||| ||
Sbjct 200629 TCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACG 200570
Query 35726 AATATCTGCATTC 35738
|| ||||||||||
Sbjct 200569 AAGATCTGCATTC 200557
Score = 82.4 bits (90), Expect = 7e-11
Identities = 136/194 (70%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605
|| ||||| ||||||||||| | | |||| |||| ||||| ||||| || || ||
Sbjct 201205 TCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCGTCTTCCAGTTGCTTGCCAGCGAAG 201146
Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGT 35664
|| || || || || || | ||| | | ||| |||||| ||| ||| | ||| | |
Sbjct 201145 ATTAAACGTTGTTGATCTGGAGGGATTCCCTCTTTGTCC-TGAATTTTGGCCTTTACGTT 201087
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | | ||||| | ||| || || | ||||| |||||||| || | |||||||||
Sbjct 201086 TTCAATGGTGTCTGAAGCTTCGACTTCGAGGGTGATGGTTTTACCAGTAAGAGTTTTCAC 201027
Query 35725 AAATATCTGCATTC 35738
|| || |||||||
Sbjct 201026 GAAAATTTGCATTC 201013
>seq10177
Length=3058365
Score = 91.5 bits (100), Expect = 1e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608
|||||||| |||||||||| || || || | || |||||||| || || || || ||
Sbjct 2346115 TTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGATG 2346174
Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC 35668
| ||||| || || | |||| | ||||||||| |||||| ||| | | | |
Sbjct 2346175 AGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 2346234
Query 35669 ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAAT 35728
| || ||| | || ||||| | ||||| ||||||||||| | |||||||| ||
Sbjct 2346235 ATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGAAA 2346294
Query 35729 ATCTGCAT 35736
||||||||
Sbjct 2346295 ATCTGCAT 2346302
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450706940565320
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