Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq15293 114 1e-20 seq9764 109 5e-19 seq10177 91.5 1e-13 >seq15293 Length=768699 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||||| | | ||||||||||| || || ||||||||||| ||||| | Sbjct 127068 TTCCACCACGTAGACGAAGAACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAG 127127 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || |||| || || ||||| || || || ||||| |||||||| || | | Sbjct 127128 AGAGAGTACGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTG 127187 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 | | || ||||||||| ||| ||| || || | || | | ||| || | || Sbjct 127188 GGATGCCTTCCTTGTCC-TGAATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCA 127246 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || |||| |||||| ||||| ||||||| ||||| ||||| || ||||||| Sbjct 127247 ACTTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCATTC 127298 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||||||| | | |||||||| || || ||||| || |||||||| || | Sbjct 126842 CCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAA 126901 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || ||||| || || || || || || | |||||| || | ||| Sbjct 126902 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGG 126961 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||||| | ||| |||||| || | | || | | ||| || | || || Sbjct 126962 ATTCCTTCCTTGT-CTTGAATTTTTGCTTTGACATTTTCGATCGTATCTGATGCCTCAAC 127020 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||| |||||| ||||| ||||||| ||||| ||||| || ||||||| Sbjct 127021 TTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCATTC 127070 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||||||| | | |||||||| || ||| ||||| || |||||||| || | Sbjct 126158 CCACCACGTAAACGGAGAACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAGAA 126217 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || ||||| || || || || || || | |||||| || | ||| Sbjct 126218 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGG 126277 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | || |||| | ||| ||| || |||| || | | ||||||| | || || Sbjct 126278 ATTCCTTCTTTGT-CTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAAC 126336 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 126337 TTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126384 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||||| | | ||||||||||| || || ||||||||||| ||||| | Sbjct 127296 TTCCACCACGTAGACGAAGAACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAATCAG 127355 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || |||| || || ||||| || || || ||||| |||||||| || | | Sbjct 127356 AGAGAGTACGACCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTG 127415 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCC 35686 | | || ||||| || |||| ||||||| ||| | | || || | || Sbjct 127416 GGATGCCTTCCTTATCTTGGATC-TTTGCTTTTACGTTCTCAATGGTATCAGAAGCCTCG 127474 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || || || || || ||||| || ||||| || |||||||| Sbjct 127475 ACTTCCAGAGTTATGGTCTTCCCGGTCAACGTCTTCACGAAAATCTGCAT 127524 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||||||| | | |||||||| || || ||||| || |||||||| || | Sbjct 126386 CCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAA 126445 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || ||||| || || || || || || | |||||| || | ||| Sbjct 126446 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGG 126505 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | || |||| | ||| ||| || |||| || | | ||||||| | || || Sbjct 126506 ATTCCTTCTTTGT-CTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAAC 126564 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 126565 TTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126612 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||||||| | | |||||||| || || ||||| || |||||||| || | Sbjct 126614 CCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAA 126673 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || ||||| || || || || || || | |||||| || | ||| Sbjct 126674 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGG 126733 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | || |||| | ||| ||| || |||| || | | ||||||| | || || Sbjct 126734 ATTCCTTCTTTGT-CTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAAC 126792 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 126793 TTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126840 >seq9764 Length=1320143 Score = 109 bits (120), Expect = 5e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||||||||||||||||| | |||| |||| ||||||||||| || || || Sbjct 200521 TCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAG 200462 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || || || || | ||||| || || ||||| |||||| ||||| | || Sbjct 200461 ATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTT 200402 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || | ||| || || | ||||| ||||| || || | |||||||||| Sbjct 200401 TCTATTGTATCAGAGGCTTCAACTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACA 200342 Query 35726 AATATCTGCATTC 35738 || || ||||||| Sbjct 200341 AAGATTTGCATTC 200329 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||||||||||||||||| | |||| |||| |||| ||||||||| || || Sbjct 199837 TCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAG 199778 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || || || || | ||||| || || || || |||||| || | | | Sbjct 199777 ATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGGATCTTGGCTTTGACATTC 199718 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || | ||||||||| | ||||| ||||| || || | |||||||||| Sbjct 199717 TCTATAGTATCAGAAGCTTCCACCTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACA 199658 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 199657 AAGATTTGCAT 199647 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||||||||||||||||| | |||| |||| ||||||||||| || || || Sbjct 200065 TCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAG 200006 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || || || || | ||||| || || || || |||||| |||| || Sbjct 200005 ATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTT 199946 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || | ||| || || | ||||| ||||| || || | |||||| || Sbjct 199945 TCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACG 199886 Query 35726 AATATCTGCATTC 35738 || |||||||||| Sbjct 199885 AAGATCTGCATTC 199873 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||||||||||||||||| | |||| |||| ||||||||||| || || || Sbjct 200749 TCTTTTTGAATGTTGTAATCGGAGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAG 200690 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || || || || | ||||| || || || || |||||| |||| || Sbjct 200689 ATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTT 200630 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || | ||| || || | ||||| ||||| || || | |||||| || Sbjct 200629 TCTATTGTATCAGAGGCTTCAACTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACG 200570 Query 35726 AATATCTGCATTC 35738 || |||||||||| Sbjct 200569 AAGATCTGCATTC 200557 Score = 82.4 bits (90), Expect = 7e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| ||||||||||| | | |||| |||| ||||| ||||| || || || Sbjct 201205 TCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCGTCTTCCAGTTGCTTGCCAGCGAAG 201146 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGT 35664 || || || || || || | ||| | | ||| |||||| ||| ||| | ||| | | Sbjct 201145 ATTAAACGTTGTTGATCTGGAGGGATTCCCTCTTTGTCC-TGAATTTTGGCCTTTACGTT 201087 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | ||| || || | ||||| |||||||| || | ||||||||| Sbjct 201086 TTCAATGGTGTCTGAAGCTTCGACTTCGAGGGTGATGGTTTTACCAGTAAGAGTTTTCAC 201027 Query 35725 AAATATCTGCATTC 35738 || || ||||||| Sbjct 201026 GAAAATTTGCATTC 201013 >seq10177 Length=3058365 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608 |||||||| |||||||||| || || || | || |||||||| || || || || || Sbjct 2346115 TTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGATG 2346174 Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC 35668 | ||||| || || | |||| | ||||||||| |||||| ||| | | | | Sbjct 2346175 AGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 2346234 Query 35669 ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAAT 35728 | || ||| | || ||||| | ||||| ||||||||||| | |||||||| || Sbjct 2346235 ATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGAAA 2346294 Query 35729 ATCTGCAT 35736 |||||||| Sbjct 2346295 ATCTGCAT 2346302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450706940565320