Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq9873 129 8e-25 seq10371 109 8e-19 seq9983 84.2 3e-11 >seq9873 Length=3435365 Score = 129 bits (142), Expect = 8e-25 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 39883 AACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTG 39942 || ||| || || || | || | |||||| || |||||||||||||| || || || || Sbjct 2562331 AATATACGTTTCAATGAGCAAAGAATACATCTCAGAATGGATGTTTTCTATTGCAATTTG 2562272 Query 39943 AAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAA 40002 ||| || |||||||| | |||||| ||||||| ||||||| || ||||| || || Sbjct 2562271 AAAGCCATAAAAACAACGTGCTTCGGTAATTTTTACCTCTTGACTGAATCTCTCAATCAG 2562212 Query 40003 ATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATA 40062 ||| ||||| || || ||||| |||||||| ||||| || ||||| |||||| || Sbjct 2562211 ATTCTCATTAACAATACCATCGGATGCGGCAAAGAATGCTAAGACATGAGAAATAAAGTA 2562152 Query 40063 TTTTTCATC 40071 ||| || || Sbjct 2562151 TTTCTCGTC 2562143 Score = 116 bits (128), Expect = 5e-21 Identities = 169/235 (72%), Gaps = 9/235 (4%) Strand=Plus/Minus Query 39413 TTATAtttt---tttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATG 39469 |||||| || |||| |||||||||| | | |||||| || || |||||||| ||| Sbjct 2563445 TTATATATTACCTTTTCAAATCCTAATGCAACGAACAATCTGTCCGCGACAAATTCGATG 2563386 Query 39470 TATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGA 39529 || | ||| | | |||||||| ||||| | || || |||| |||| |||| | Sbjct 2563385 TAATTACACATAAGTGTGCAATTCATACCTATTAATTCGACAGGTAATGCCTGTGTTAAA 2563326 Query 39530 AACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGT 39589 || |||||||| || || ||||| || |||| |||||| | || |||| | | | | Sbjct 2563325 AATTCTTTTTCAATTTCCACGGCATCCATTATAATCGATTTCACATGCTCA--AAT-GAT 2563269 Query 39590 GGAT---GCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 || | | | | ||||||||||||||| |||||||| |||||||||| |||| Sbjct 2563268 GGCTTTTGTATGATATGTTTAAACATTAAACAGGCGAAATCACAATGTAATCCCT 2563214 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 40097 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTAC 40156 ||| ||| ||| | || ||||||||| |||||||||| || || | |||||||| ||| Sbjct 2561946 ATACCTTGTGA-AGATTTACTTCTTCTACTGTCCAAAAAGAGGCTACAGCCTTTTTATAC 2561888 Query 40157 ATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGA 40207 |||||||| || ||| ||||||| || ||||| || ||||| | ||||||| Sbjct 2561887 ATGTTCCAGATGTCAGGATATTGAATAGGAAACATTACAAAACGATTTGGA 2561837 >seq10371 Length=124667 Score = 109 bits (120), Expect = 8e-19 Identities = 191/278 (69%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 |||| || || || | ||| || ||||| | |||||| ||| || ||||| ||||| Sbjct 62529 TTCTGCATATCTTCGTCCCATAAATTTCTAGCGGTTAAATCTCGCAGTAGATGTGGATTG 62588 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || |||||| ||||| || || | | || ||||| || ||||||||||| Sbjct 62589 ACAATGACAAATTCTCCAGACAATACGCGCCTCACATAGATATTGCTTGTATATGGTTCA 62648 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | ||||| ||||| || | ||| || || || || || |||||||||||||| | || Sbjct 62649 ATGGATTCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAA 62708 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | |||||| | ||| ||| ||| || |||| | | ||||||||| | | Sbjct 62709 AGGGAATTTCTTATACCGTGTTCCGCGATCTTCGCTTTCAATTCACACCAATCCCATAAA 62768 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 || | ||| ||| ||||| | ||| ||||| || || Sbjct 62769 TCTGTTGGCTTAACGTTCCACATATCATATTGGAGGAT 62806 Score = 100 bits (110), Expect = 4e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 |||||||| |||||||||||| | || | |||| |||||| ||||||||| || |||| Sbjct 63647 AATTCATCGCCCCAAACATCAGCTAAGCGAGGAGATTCATATGGACACATTAAGCTCCAC 63706 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 | || |||| | || |||| |||||| ||||| || ||||| ||||| ||| | | Sbjct 63707 ATCTCGTCATTATACACACGTTCCATAAAAAGATCTGGTATCCATAGAGCATAAAATAAA 63766 Query 69640 TCTCTGGTTC 69649 ||||||| || Sbjct 63767 TCTCTGGCTC 63776 Score = 95.1 bits (104), Expect = 2e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 68440 CTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATA 68499 ||||| ||| |||||||||| || ||||| | | ||||| ||||||||||| Sbjct 62224 CTCCAGCCGAAGAAATGCATCGAAGTAAGTTTCTCAGTTGTCGGATCTCCTATATGAATA 62283 Query 68500 TTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAA-TACT 68558 || | || || |||||| || |||||||||| ||| || ||||||| | || |||| Sbjct 62284 TTTAGAGACTGTGATTGATCAATAAAAGCTCCTCGATCGGCTGCCATTTCGAGAATTACT 62343 Query 68559 CTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 ||||| || || ||||| | | ||||| ||| || ||| | |||||| || Sbjct 62344 -TTTTGTGGTATCTCCCAGACAATCTTATAAAGCTCTTTCAAATCATCGGG 62393 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 ||| ||||| |||| |||| | |||| | ||||||||| || ||||| ||||| || Sbjct 62902 ATACGTTTCGTAAGTGCCTTTTTCCGCAGCCAATTCACAACTGGCTTCTAAGGCACCATA 62961 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 ||||| ||||||||||| || | || || |||| || ||| || ||||| ||||| Sbjct 62962 ATAAAGCGTTTCGAAAATTTTAATGTTAAGTTCTTTCGCCTCTTTGCTCTCGAAGGGATA 63021 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 | | || | || |||||||| || || || | |||||||| Sbjct 63022 TCGCATTAGTAGGAACGCATCTGCTAAACCTTGTATTCCAATACC 63066 Score = 87.8 bits (96), Expect = 2e-12 Identities = 179/266 (67%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 || ||||| || || | |||| | |||||||||| || || || || || || || Sbjct 64616 CTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGCGTTGGTGAAGCATGTGTAAAA 64675 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATT 70089 || ||| || | ||| |||||||| || || || || || |||||| Sbjct 64676 TATCGTTCGGACAAATAATTATATGTTTCTATGACTTTGTCAATGTCATTTCCATGAATA 64735 Query 70090 CCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTC 70149 || | || || | |||||||||||||||||| | ||| || | ||| || |||||| Sbjct 64736 CCAACAGCTACTCTCATCAACATATGCTGAGGCCTTTCGACTATCTTAGAGTTGATTTTC 64795 Query 70150 AACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCG 70209 | || ||| | | || || |||||||| |||| ||| || || ||||||| ||| Sbjct 64796 AGCAAGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGTCTCGATCG 64855 Query 70210 TAAATAATAACAGAATTTAGTTTATC 70235 || || || |||| | ||||| || Sbjct 64856 TATATTATGGCAGAGTCCAGTTTCTC 64881 >seq9983 Length=1335725 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69505 GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA 69564 ||||||| ||| |||| ||| |||||| ||| || ||||||||||||| |||| Sbjct 1103002 GTATATAATGTTTCAAATTTATCACCCCAAGTTTCAATTAACCCAGGACATTCATGTGGA 1103061 Query 69565 CACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCA 69623 ||||| | ||| ||||||||||| ||| ||||||||||||| || ||| |||| Sbjct 1103062 CACATTAGGCTCCATACATCATCATCAAAAACACGTTTCATAAATAAATTTGGAGTCCA 1103120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686776750369560