Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq9873 95.1 1e-14 >seq9873 Length=3435365 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 || ||| | ||||| ||| || || || || ||||| || ||| || || || ||| Sbjct 2562146 GAGAAATACTTTATTTCTCATGTCTTAGCATTCTTTGCCGCATCCGATGGTATTGTTAAT 2562205 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAA-TTACCAGAAGCACGATGTTTTTA 43947 || ||| || || | || ||||| || || ||||| |||||||| |||||||| Sbjct 2562206 GAGAATCTGATTGAGAGATTCAGTCAAGAGGTAAAAATTACC-GAAGCACGTTGTTTTTA 2562264 Query 43948 TGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATAC 44007 ||| ||||||||||| |||||||| || ||||| || ||||| | | || || || || Sbjct 2562265 TGGCTTTCAAATTGCAATAGAAAACATCCATTCTGAGATGTATTCTTTGCTCATTGAAAC 2562324 Query 44008 GTACAT 44013 ||| || Sbjct 2562325 GTATAT 2562330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397381504200895