Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq9764 134 1e-26 seq15293 116 3e-21 seq10371 111 1e-19 seq10177 86.0 5e-12 >seq9764 Length=1320143 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||| |||| ||| | || || ||||||||||| ||||| ||| Sbjct 200101 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200042 Query 27081 A-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| | ||||||| ||||| || || ||| | || | ||| |||||||| || || Sbjct 200041 AGTGTTCTAC-CGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGG 199983 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || |||||||| ||||||| ||||| | |||||| || || | ||||||||| Sbjct 199982 AATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAAC 199923 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || | ||| || || |||||||| || ||||| ||||| Sbjct 199922 TTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 199875 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||| |||| ||| | || || ||||||||||| ||||| ||| Sbjct 200557 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200498 Query 27081 A-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| | ||||||| ||||| || || ||| | || | ||| |||||||| || || Sbjct 200497 AGTGTTCTAC-CGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGG 200439 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || ||||| || ||||||| |||| |||||| || || | ||||||||| Sbjct 200438 AATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAAC 200379 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || | ||| || || ||||||||||||||||||||||| Sbjct 200378 TTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCAT 200331 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||| |||| ||| | || || ||||||||||| ||||| ||| Sbjct 200785 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200726 Query 27081 A-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| | ||||||| ||||| || || ||| | || | ||| |||||||| || || Sbjct 200725 AGTGTTCTAC-CGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGG 200667 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || |||||||| ||||||| ||||| | |||||| || || | ||||||||| Sbjct 200666 AATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAAC 200607 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || | ||| || || |||||||| || ||||| ||||| Sbjct 200606 TTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 200559 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||| ||||| || | ||||| ||||| |||||||||||||| | Sbjct 200329 CCTCCTCGAAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTC--TG 200272 Query 27081 ATGTTGCGCT--CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | || || ||||||| | ||| || || ||| | || | ||| |||||||| || | Sbjct 200271 AGAGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAG 200212 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || ||||| || ||||||| || | | |||||| ||||| | |||||||| Sbjct 200211 GAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAA 200152 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || || | ||| || || ||||||||||| ||||| ||||| Sbjct 200151 CTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCAT 200103 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || || ||||| || | ||||| ||||| |||||||||||||| | Sbjct 201013 CCTCCTCGAAGACGTAAAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTC--TG 200956 Query 27081 ATGTTGCGCT--CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | || || ||||||| | ||| || || ||| | || | ||| |||||||| || | Sbjct 200955 AGAGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAG 200896 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || ||||| || ||||||| || | | |||||| ||||| | |||||||| Sbjct 200895 GAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAA 200836 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || || | ||| || || ||||||||||| ||||| ||||| Sbjct 200835 CTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCAT 200787 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||| |||| ||| | || || ||||||||||| ||||| ||| Sbjct 199873 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 199814 Query 27081 A-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| | ||||||| | ||| ||||| ||| | || | ||| |||||||| || || Sbjct 199813 AGTGTTCTAC-CGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGG 199755 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || |||||||| ||||||| ||| | | |||| ||| || | ||||| || Sbjct 199754 AATGCCTTCTTTATCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCAC 199695 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || | ||| || || ||||||||||||||||||||||| Sbjct 199694 CTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || || || || || | || || |||||||| || ||||| || Sbjct 201241 CCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAA 201182 Query 27081 AT-GTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| || ||||||| || || || || ||| | || | ||| |||||||| || || Sbjct 201181 AGAGTTCTGC-CGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGG 201123 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||||| || || ||| || | | |||| | ||||||| ||||| || Sbjct 201122 GATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGAC 201063 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || | ||| || || ||||||||||| || |||||||| Sbjct 201062 TTCGAGGGTGATGGTTTTACCAGTAAGAGTTTTCACGAAAATTTGCAT 201015 >seq15293 Length=768699 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||||||||| || || ||||||||||| || || || | | || ||||||| Sbjct 127088 ACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGGCCGTCTTCA 127147 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || |||||| | || | |||||| ||||| || || | || || || || Sbjct 127148 AGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTGTCCTGA 127207 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| ||| | | |||| | || |||| || |||||||| | || |||| ||| Sbjct 127208 ATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTT 127267 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||||||| ||||| |||||||||||||| Sbjct 127268 CCCGTCAGGGTTTTGACAAAGATTTGCAT 127296 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || || || | |||||||| || || || || || || || |||||||| Sbjct 126842 CCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAA 126901 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| ||||||| |||||||| |||||| |||| | | ||| ||||| || || Sbjct 126902 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGG 126961 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || || || ||| | |||| | || |||| || |||||| Sbjct 126962 ATTCCTTCCTTGTCTTGAATTTTTGCTTTGACATTTTCGATCGTATCTGATGCCTCAACT 127021 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || |||| ||| |||||||| ||||| |||||||||||||| Sbjct 127022 TCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCAT 127068 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||||||||||||||||||| || | || | || || |||||||| || Sbjct 125732 GTAGATTCTTTTTGAATATTGTAGTCGGACAAAGTCCGTCCATCCTCCAGCTGTTTGCCC 125791 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| |||| || | |||||||| || || | || |||||||| || || |||| Sbjct 125792 GCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGAATTTTCGCTTTC 125851 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | ||||| || || | || |||| ||| || || ||||| Sbjct 125852 ACGTTCTCGATCGTGTCAGACGCTTCGACCTCCAATGTGATAGTTTTACCAGTGAGAGTC 125911 Query 27231 TTCACAAAGATTTGCATA 27248 || || || || |||||| Sbjct 125912 TTGACGAAAATCTGCATA 125929 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||||||||| || || ||||||||||| || || || | | || ||||||| Sbjct 127316 ACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGACCGTCTTCA 127375 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || |||||| | || | |||||| ||||| || || | || || ||||| | Sbjct 127376 AGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGG 127435 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| ||| | | | || | || || | || || ||||| |||||||| | || Sbjct 127436 ATCTTTGCTTTTACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAGAGTTATGGTCTTC 127495 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| || ||||| || || ||||| Sbjct 127496 CCGGTCAACGTCTTCACGAAAATCTGCAT 127524 >seq10371 Length=124667 Score = 111 bits (122), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 130765 AAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTC 130824 ||| || |||| || ||||| || || || || ||||| || | ||||||| |||||| Sbjct 62597 AAATTCTCCAGACAATACGCGCCTCACATAGATATTGCTTGTATATGGTTCAATGGATTC 62656 Query 130825 GTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATT 130884 ||| || || || || ||||| || | || || ||||| ||| | ||| || ||||| Sbjct 62657 GTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGGGAATT 62716 Query 130885 ACGAAGACCGTGCGTCGTGATTTTTCGCTT-CAATTCATCCCAATCCCATAGAGAGGTAG 130943 | | |||||| || ||| || ||||| ||||||| ||||||||||| | || | Sbjct 62717 TCTTATACCGTGTTCCGCGATCTT-CGCTTTCAATTCACACCAATCCCATAAATCTGTTG 62775 Query 130944 GTTTGACATTGTTCCACATATCAAATTGTAGTAT 130977 | || || ||||||||||||| |||| || || Sbjct 62776 GCTTAAC---GTTCCACATATCATATTGGAGGAT 62806 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/285 (67%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 131203 TTCGGTGGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGT 131262 |||| | ||||||| ||||| ||| || | ||| | || ||| || || |||| | Sbjct 63178 TTCGATAGGATAAAAGTTAACGTCGATGACTTTATCTAGATTACGAGTAACGATTTTCGC 63237 Query 131263 GACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTAC 131322 ||| |||| | ||| || ||||| || || || || || ||||| || || Sbjct 63238 GACTGTTTTAAGTTTATCAAAATCGAAAGTTTTCGTGTCTGTATTAACAAACATGTTGAC 63297 Query 131323 ACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTC 131382 | || || || | |||||| || || ||| || | || | || | ||||||||| Sbjct 63298 AGCGATAGATGCTAAATTACACACAGCGACTTCTCCAGGACCGGAGTATTCAACAATTTC 63357 Query 131383 GGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATT-GCTTTTAGCATTCA 131441 || |||||| || |||| || || ||||| | || || ||||| | |||| | ||| Sbjct 63358 GGTGCACAAGTTGCTGCATTTGATAGTGCCTATATGCTGATGATTCGATTTTCG-ATTGC 63416 Query 131442 CATGGTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAG 131486 ||| || || || | ||| || || || || ||||| ||||||| Sbjct 63417 AATGATCTTTATAAAGCATATAAGGTGTTCCGGTTTCTACTTGAG 63461 >seq10177 Length=3058365 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 |||||||||||||||| ||| || | || | || || |||||||| || ||| | | Sbjct 2346113 CTTTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 2346172 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 |||| ||||||||||| || || | || || || || ||||||| || | | | Sbjct 2346173 TGAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 2346232 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | | || || | || || || || || || || | ||| ||||| || |||||||| | Sbjct 2346233 CGATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGA 2346292 Query 27238 AGATTTGCAT 27247 | || ||||| Sbjct 2346293 AAATCTGCAT 2346302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424854753881448