Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq15293 134 9e-27 seq9764 107 1e-18 >seq15293 Length=768699 Score = 134 bits (148), Expect = 9e-27 Identities = 165/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | || || ||||||||||||||||| || || || || Sbjct 127307 AGACGAAGAACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGA 127366 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||||||||| || ||||| || || |||||||| || || || || | || ||| Sbjct 127367 CCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCC 127426 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| |||| |||| ||| ||| | ||| || || ||| ||||||| || Sbjct 127427 TTATCTTGGATC-TTTGCTTTTACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAGAGT 127485 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||| || || ||||| ||||| ||||| |||||||||||| || Sbjct 127486 TATGGTCTTCCCGGTCAACGTCTTCACGAAAATCTGCATGGTG 127528 Score = 129 bits (142), Expect = 4e-25 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | ||| |||||||| || || ||||| |||||||||||||| ||| Sbjct 125930 CCACCGCGAAGTCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAA 125989 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||||||||| ||||| |||||||| || || | ||| || || || || Sbjct 125990 AGCGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGG 126049 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGT-CTTCGCTCTCCA 34657 | ||| || ||||| ||| ||| | ||| ||| | ||| |||| | ||| || | Sbjct 126050 ATTCCTTCTTTGTC-CTGAATTTTAGCTTTCACGTTTTCAATCGTGTCCGATGCT-TCGA 126107 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || ||||| ||||| | ||||| |||||||| ||||| Sbjct 126108 CTTCCAGAGTGATTGTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCAT 126156 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | || || ||||||||||||||||| || || || || Sbjct 127079 AGACGAAGAACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGG 127138 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||||||||| || ||||| || || |||||||| || || || || | || ||| Sbjct 127139 CCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCC 127198 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | ||| ||| | || || ||| ||| ||||||| || Sbjct 127199 TTGTC-CTGAATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCAACTTCCAACGT 127257 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || | ||||| ||||| || ||||| Sbjct 127258 GATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCAT 127296 >seq9764 Length=1320143 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| |||| ||| || ||| || ||||||||||| ||||| || Sbjct 200101 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200042 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| ||||||| || || || || || || || ||||| ||||| || || || Sbjct 200041 AGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 199982 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| |||| || | ||| ||| | ||||| || | || || Sbjct 199981 ATGCCTTCTTTATCTTGGATC-TTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAAC 199923 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || ||||| || || | ||||| || || |||||||| Sbjct 199922 TTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 199875 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| |||| ||| || ||| || ||||||||||| ||||| || Sbjct 200557 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200498 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| ||||||| || || || || || || || ||||| ||||| || || || Sbjct 200497 AGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 200438 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || || |||||| |||||| || | | ||||| || | || ||| Sbjct 200437 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAACT 200378 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || ||||| || || | ||||||||||| || ||||| Sbjct 200377 TCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCAT 200331 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| |||| ||| || ||| || ||||||||||| ||||| || Sbjct 200785 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200726 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| ||||||| || || || || || || || ||||| ||||| || || || Sbjct 200725 AGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 200666 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| |||| || | ||| ||| | ||||| || | || || Sbjct 200665 ATGCCTTCTTTATCTTGGATC-TTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAAC 200607 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || ||||| || || | ||||| || || |||||||| Sbjct 200606 TTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 200559 Score = 105 bits (116), Expect = 4e-18 Identities = 167/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| |||| ||| || ||| || ||||||||||| ||||| || Sbjct 199873 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 199814 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| ||||||| | || ||||| || || || ||||| ||||| || || || Sbjct 199813 AGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 199754 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTC-GCTCTCCA 34657 | || || || ||| |||||| | ||| || | || || || ||| |||| Sbjct 199753 ATGCCTTCTTTATCTTGGATCTTG-GCTTTGACATTCTCTATAGTATCAGAAGCT-TCCA 199696 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 | || | ||| || ||||| || || | ||||||||||| || |||||| ||| Sbjct 199695 CCTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCATGATGA 199642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314670609739307