Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq15293 134 9e-27
seq9764 107 1e-18
>seq15293
Length=768699
Score = 134 bits (148), Expect = 9e-27
Identities = 165/223 (74%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||||| | || || ||||||||||||||||| || || || ||
Sbjct 127307 AGACGAAGAACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGA 127366
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||||||||| || ||||| || || |||||||| || || || || | || |||
Sbjct 127367 CCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCC 127426
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|| ||| |||| |||| ||| ||| | ||| || || ||| ||||||| ||
Sbjct 127427 TTATCTTGGATC-TTTGCTTTTACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAGAGT 127485
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
||| || || ||||| ||||| ||||| |||||||||||| ||
Sbjct 127486 TATGGTCTTCCCGGTCAACGTCTTCACGAAAATCTGCATGGTG 127528
Score = 129 bits (142), Expect = 4e-25
Identities = 169/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| | ||| |||||||| || || ||||| |||||||||||||| |||
Sbjct 125930 CCACCGCGAAGTCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAA 125989
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||||||||| ||||| |||||||| || || | ||| || || || ||
Sbjct 125990 AGCGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGG 126049
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGT-CTTCGCTCTCCA 34657
| ||| || ||||| ||| ||| | ||| ||| | ||| |||| | ||| || |
Sbjct 126050 ATTCCTTCTTTGTC-CTGAATTTTAGCTTTCACGTTTTCAATCGTGTCCGATGCT-TCGA 126107
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||||| || || ||||| ||||| | ||||| |||||||| |||||
Sbjct 126108 CTTCCAGAGTGATTGTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCAT 126156
Score = 109 bits (120), Expect = 3e-19
Identities = 157/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||||| | || || ||||||||||||||||| || || || ||
Sbjct 127079 AGACGAAGAACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGG 127138
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||||||||| || ||||| || || |||||||| || || || || | || |||
Sbjct 127139 CCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCC 127198
Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| ||| | ||| ||| | || || ||| ||| ||||||| ||
Sbjct 127199 TTGTC-CTGAATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCAACTTCCAACGT 127257
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| ||||| || || | ||||| ||||| || |||||
Sbjct 127258 GATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCAT 127296
>seq9764
Length=1320143
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| |||||||| |||| ||| || ||| || ||||||||||| ||||| ||
Sbjct 200101 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200042
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
||||||| ||||||| || || || || || || || ||||| ||||| || || ||
Sbjct 200041 AGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 199982
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658
| || || || ||| |||| || | ||| ||| | ||||| || | || ||
Sbjct 199981 ATGCCTTCTTTATCTTGGATC-TTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAAC 199923
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||| | ||| || ||||| || || | ||||| || || ||||||||
Sbjct 199922 TTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 199875
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| |||||||| |||| ||| || ||| || ||||||||||| ||||| ||
Sbjct 200557 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200498
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
||||||| ||||||| || || || || || || || ||||| ||||| || || ||
Sbjct 200497 AGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 200438
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659
| || || |||||| |||||| || | | ||||| || | || |||
Sbjct 200437 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAACT 200378
Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| | ||| || ||||| || || | ||||||||||| || |||||
Sbjct 200377 TCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCAT 200331
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| |||||||| |||| ||| || ||| || ||||||||||| ||||| ||
Sbjct 200785 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200726
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
||||||| ||||||| || || || || || || || ||||| ||||| || || ||
Sbjct 200725 AGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 200666
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658
| || || || ||| |||| || | ||| ||| | ||||| || | || ||
Sbjct 200665 ATGCCTTCTTTATCTTGGATC-TTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAAC 200607
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||| | ||| || ||||| || || | ||||| || || ||||||||
Sbjct 200606 TTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 200559
Score = 105 bits (116), Expect = 4e-18
Identities = 167/234 (71%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| |||||||| |||| ||| || ||| || ||||||||||| ||||| ||
Sbjct 199873 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 199814
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
||||||| ||||||| | || ||||| || || || ||||| ||||| || || ||
Sbjct 199813 AGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 199754
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTC-GCTCTCCA 34657
| || || || ||| |||||| | ||| || | || || || ||| ||||
Sbjct 199753 ATGCCTTCTTTATCTTGGATCTTG-GCTTTGACATTCTCTATAGTATCAGAAGCT-TCCA 199696
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711
| || | ||| || ||||| || || | ||||||||||| || |||||| |||
Sbjct 199695 CCTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCATGATGA 199642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314670609739307
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |