Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq15293 104 2e-17
seq9764 93.3 3e-14
>seq15293
Length=768699
Score = 104 bits (114), Expect = 2e-17
Identities = 162/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGC 27846
||||||||| ||||| ||||| || || || ||| ||| || | || || || | |
Sbjct 127069 AATGCAAATCTTTGTCAAAACCCTGACGGGAAAAACTATCACGTTGGAAGTTGAGGCATC 127010
Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| ||||| | ||| |||||| |||||| ||||| ||||| | || ||
Sbjct 127009 AGATACGATCGAAAAT--GTCAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAGAT 126952
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
||||| | |||||||| ||||||||||| | || |||| |||| | || || |||
Sbjct 126951 CAGCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTAC 126892
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||| || || || |||||||||||| | ||||| ||||| ||
Sbjct 126891 AACATCCAGAAGGAATCGACATTGCATTTGGTTCTCCGTTTACGTGGTGG 126842
Score = 96.9 bits (106), Expect = 2e-15
Identities = 162/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCA-C 27848
|||||||||||||| ||||| || || || ||| || || | || || || ||| |
Sbjct 126384 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAG-GCATC 126326
Query 27849 CGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
|||| ||| | || || ||| ||||| ||||||||||| | || ||
Sbjct 126325 CGACACGATTGAAAAC--GTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGAT 126268
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
||||| | |||||||| ||||||||||| | || |||| |||| | || || |||
Sbjct 126267 CAGCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTAC 126208
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||| || || || |||||||||||| | ||||| ||||| ||
Sbjct 126207 AACATCCAGAAGGAATCTACATTGCATTTGGTTCTCCGTTTACGTGGTGG 126158
Score = 96.9 bits (106), Expect = 2e-15
Identities = 162/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCA-C 27848
|||||||||||||| ||||| || || || ||| || || | || || || ||| |
Sbjct 126612 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAG-GCATC 126554
Query 27849 CGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
|||| ||| | || || ||| ||||| ||||||||||| | || ||
Sbjct 126553 CGACACGATTGAAAAC--GTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGAT 126496
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
||||| | |||||||| ||||||||||| | || |||| |||| | || || |||
Sbjct 126495 CAGCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTAC 126436
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||| || || || |||||||||||| | ||||| ||||| ||
Sbjct 126435 AACATCCAGAAGGAATCGACATTGCATTTGGTTCTCCGTTTACGTGGTGG 126386
Score = 96.9 bits (106), Expect = 2e-15
Identities = 162/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCA-C 27848
|||||||||||||| ||||| || || || ||| || || | || || || ||| |
Sbjct 126840 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAG-GCATC 126782
Query 27849 CGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
|||| ||| | || || ||| ||||| ||||||||||| | || ||
Sbjct 126781 CGACACGATTGAAAAC--GTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGAT 126724
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
||||| | |||||||| ||||||||||| | || |||| |||| | || || |||
Sbjct 126723 CAGCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTAC 126664
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||| || || || |||||||||||| | ||||| ||||| ||
Sbjct 126663 AACATCCAGAAGGAATCGACATTGCATTTGGTTCTCCGTTTACGTGGTGG 126614
Score = 87.8 bits (96), Expect = 1e-12
Identities = 153/217 (71%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||||||||| ||||| || || || ||| || || | || |||||| ||| |
Sbjct 126156 ATGCAAATTTTTGTCAAAACACTCACCGGCAAAACAATCACTCTGGAAGTCGAA-GCATC 126098
Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| ||||| | || || ||| ||||| ||||||||||| | || ||
Sbjct 126097 GGACACGATTGAAAAC--GTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCAGAT 126040
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965
||||| | || || |||||||||||||| | || |||| |||| |||| || |||||
Sbjct 126039 CAGCAGAGATTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACGCTT-TCTGATTA 125981
Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
||||| || || || || ||||||||||||||
Sbjct 125980 TAACATTCAGAAGGAATCTACCCTGCATTTGGTTTTG 125944
>seq9764
Length=1320143
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| |||||||||||||||||||||||| || || | || || ||| |
Sbjct 199647 ATGCAAATCTTTGTGAAAACTCTTACTGGGAAAACCATCACCTTAGAGGTGGAAGCTTCT 199706
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || | ||| |||||| || || || |||||||| |||| || |
Sbjct 199707 GATACTATAGAGAAT--GTCAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATC 199764
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
| ||||| || || || || || || || ||||| |||| | | | ||||||||||
Sbjct 199765 AACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACACTCTCCGATTACA 199824
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||| |||||||| ||| | ||| ||||| ||||| | || || ||
Sbjct 199825 ACATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGG 199873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355795700154333
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |