Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq15293 104 2e-17 seq9764 93.3 3e-14 >seq15293 Length=768699 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGC 27846 ||||||||| ||||| ||||| || || || ||| ||| || | || || || | | Sbjct 127069 AATGCAAATCTTTGTCAAAACCCTGACGGGAAAAACTATCACGTTGGAAGTTGAGGCATC 127010 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||||| | ||| |||||| |||||| ||||| ||||| | || || Sbjct 127009 AGATACGATCGAAAAT--GTCAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAGAT 126952 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| | |||||||| ||||||||||| | || |||| |||| | || || ||| Sbjct 126951 CAGCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTAC 126892 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || || || |||||||||||| | ||||| ||||| || Sbjct 126891 AACATCCAGAAGGAATCGACATTGCATTTGGTTCTCCGTTTACGTGGTGG 126842 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCA-C 27848 |||||||||||||| ||||| || || || ||| || || | || || || ||| | Sbjct 126384 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAG-GCATC 126326 Query 27849 CGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| ||| | || || ||| ||||| ||||||||||| | || || Sbjct 126325 CGACACGATTGAAAAC--GTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGAT 126268 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| | |||||||| ||||||||||| | || |||| |||| | || || ||| Sbjct 126267 CAGCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTAC 126208 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || || || |||||||||||| | ||||| ||||| || Sbjct 126207 AACATCCAGAAGGAATCTACATTGCATTTGGTTCTCCGTTTACGTGGTGG 126158 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCA-C 27848 |||||||||||||| ||||| || || || ||| || || | || || || ||| | Sbjct 126612 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAG-GCATC 126554 Query 27849 CGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| ||| | || || ||| ||||| ||||||||||| | || || Sbjct 126553 CGACACGATTGAAAAC--GTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGAT 126496 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| | |||||||| ||||||||||| | || |||| |||| | || || ||| Sbjct 126495 CAGCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTAC 126436 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || || || |||||||||||| | ||||| ||||| || Sbjct 126435 AACATCCAGAAGGAATCGACATTGCATTTGGTTCTCCGTTTACGTGGTGG 126386 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCA-C 27848 |||||||||||||| ||||| || || || ||| || || | || || || ||| | Sbjct 126840 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAG-GCATC 126782 Query 27849 CGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| ||| | || || ||| ||||| ||||||||||| | || || Sbjct 126781 CGACACGATTGAAAAC--GTGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGAT 126724 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| | |||||||| ||||||||||| | || |||| |||| | || || ||| Sbjct 126723 CAGCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTAC 126664 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || || || |||||||||||| | ||||| ||||| || Sbjct 126663 AACATCCAGAAGGAATCGACATTGCATTTGGTTCTCCGTTTACGTGGTGG 126614 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| || || || ||| || || | || |||||| ||| | Sbjct 126156 ATGCAAATTTTTGTCAAAACACTCACCGGCAAAACAATCACTCTGGAAGTCGAA-GCATC 126098 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||||| | || || ||| ||||| ||||||||||| | || || Sbjct 126097 GGACACGATTGAAAAC--GTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCTCCAGAT 126040 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 ||||| | || || |||||||||||||| | || |||| |||| |||| || ||||| Sbjct 126039 CAGCAGAGATTGATCTTTGCCGGAAAACAGCTTGAAGACGGCCGCACGCTT-TCTGATTA 125981 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 ||||| || || || || |||||||||||||| Sbjct 125980 TAACATTCAGAAGGAATCTACCCTGCATTTGGTTTTG 125944 >seq9764 Length=1320143 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||||||||||||||||||| || || | || || ||| | Sbjct 199647 ATGCAAATCTTTGTGAAAACTCTTACTGGGAAAACCATCACCTTAGAGGTGGAAGCTTCT 199706 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| || || || |||||||| |||| || | Sbjct 199707 GATACTATAGAGAAT--GTCAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATC 199764 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || || || || || || || ||||| |||| | | | |||||||||| Sbjct 199765 AACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACACTCTCCGATTACA 199824 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| ||| | ||| ||||| ||||| | || || || Sbjct 199825 ACATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGG 199873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355795700154333