Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq9764 194 4e-44 seq15293 161 2e-34 seq10177 149 1e-30 >seq9764 Length=1320143 Score = 194 bits (214), Expect = 4e-44 Identities = 176/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || || ||||| ||||| |||||||| ||||| ||||| | || || Sbjct 200095 CGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTT 200036 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || || ||||||||||||||||| |||||||| | |||||||| |||||||||| ||| Sbjct 200035 CTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCT 199976 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || |||||||| |||||||||||| || || |||||| |||||| || || Sbjct 199975 TCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGG 199916 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || |||||||| ||||| || | ||||||| Sbjct 199915 GTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 199874 Score = 194 bits (214), Expect = 4e-44 Identities = 176/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || || ||||| ||||| |||||||| ||||| ||||| | || || Sbjct 200779 CGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTT 200720 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || || ||||||||||||||||| |||||||| | |||||||| |||||||||| ||| Sbjct 200719 CTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCT 200660 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || |||||||| |||||||||||| || || |||||| |||||| || || Sbjct 200659 TCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGG 200600 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || |||||||| ||||| || | ||||||| Sbjct 200599 GTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 200558 Score = 188 bits (208), Expect = 2e-42 Identities = 175/222 (79%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || || ||||| ||||| |||||||| ||||| ||||| | || || Sbjct 200551 CGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTT 200492 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || || ||||||||||||||||| |||||||| | |||||||| |||||||||| ||| Sbjct 200491 CTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCT 200432 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| |||||||| ||||| ||||| || || |||||| |||||| ||||| Sbjct 200431 TCTTTGTCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAACTTCGAGG 200372 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || |||||||| || ||||| | |||||| Sbjct 200371 GTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCATT 200330 Score = 168 bits (186), Expect = 2e-36 Identities = 173/226 (77%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||||| || || | ||| || ||||| |||||||||||||| ||||| | ||| Sbjct 201239 TCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAG 201180 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || || || |||||||| |||||||| |||||||| | |||||||| || ||||| | Sbjct 201179 AGTTCTGCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGGAT 201120 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| || |||||||| || || || |||||||| |||||||| || ||| || || Sbjct 201119 TCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTC 201060 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| ||||| || || || || ||||| || || || | |||||| Sbjct 201059 GAGGGTGATGGTTTTACCAGTAAGAGTTTTCACGAAAATTTGCATT 201014 >seq15293 Length=768699 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 ||||| || ||||||||||| || || |||||||| || || || || | | |||| Sbjct 125710 AAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGACAAAGTCCG 125769 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 |||||| |||||||| ||||| ||||| || || | |||||| || ||||||| ||||| Sbjct 125770 TCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTC 125829 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 || || || || || ||||||||| ||||| |||||||| ||| ||||| | || Sbjct 125830 TTTATCTTGAATTTTCGCTTTCACGTTCTCGATCGTGTCAGACGCTTCGACCTCCAATGT 125889 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || ||||||||||| || || | |||||| Sbjct 125890 GATAGTTTTACCAGTGAGAGTCTTGACGAAAATCTGCAT 125928 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || | || || || || || || || ||||||||||| | ||| || Sbjct 125936 CGAAGTCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTG 125995 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||| ||||| || || || ||||| | | || || || ||||| | |||| Sbjct 125996 CGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGGATTCCT 126055 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || |||||||| || || |||||||||||| || ||||| || ||| || || ||| Sbjct 126056 TCTTTGTCCTGAATTTTAGCTTTCACGTTTTCAATCGTGTCCGATGCTTCGACTTCCAGA 126115 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || ||||| | ||||| Sbjct 126116 GTGATTGTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCAT 126156 Score = 127 bits (140), Expect = 5e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || |||||||| ||||||||||| | || || | || ||||| || ||||| || Sbjct 127100 GTCGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCG 127159 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| | || || || ||||| || | |||||||||||||| || || ||| Sbjct 127160 GCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTGTCCTGAATTTTGGCTTTG 127219 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||||||||| || || || ||||| || | ||||| || |||||||| || || Sbjct 127220 ACGTTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTTCCCGTCAGGGTT 127279 Query 211098 TTTACAAACACCTGCATT 211115 || ||||| | |||||| Sbjct 127280 TTGACAAAGATTTGCATT 127297 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || |||||||| ||||||||||| | || || | || ||||| || ||||| || Sbjct 127328 GTTGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGACCGTCTTCAAGTTGCTTTCCG 127387 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| | || || || ||||| || | |||||||| || ||||||||| ||| Sbjct 127388 GCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGGATCTTTGCTTTT 127447 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || ||||| ||||| || || || ||||| || ||||| || || | ||| Sbjct 127448 ACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAGAGTTATGGTCTTCCCGGTCAACGTC 127507 Query 211098 TTTACAAACACCTGCAT 211114 || || || | |||||| Sbjct 127508 TTCACGAAAATCTGCAT 127524 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || || |||||||| || || | ||| || | || ||||| ||||| || || Sbjct 126188 GTAGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCG 126247 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | | || || || ||||| | |||||| ||||| || || || |||| Sbjct 126248 GCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTC 126307 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 |||||||| || ||||| || ||||| || |||||||| || || || ||||| || Sbjct 126308 ACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGTT 126367 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 126368 TTGACAAAAATTTGCAT 126384 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || || |||||||| || || | ||| || | || ||||| ||||| || || Sbjct 126416 GTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCG 126475 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | | || || || ||||| | |||||| ||||| || || || |||| Sbjct 126476 GCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTC 126535 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 |||||||| || ||||| || ||||| || |||||||| || || || ||||| || Sbjct 126536 ACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGTT 126595 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 126596 TTGACAAAAATTTGCAT 126612 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || || |||||||| || || | ||| || | || ||||| ||||| || || Sbjct 126644 GTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCG 126703 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | | || || || ||||| | |||||| ||||| || || || |||| Sbjct 126704 GCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTC 126763 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 |||||||| || ||||| || ||||| || |||||||| || || || ||||| || Sbjct 126764 ACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGTT 126823 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 126824 TTGACAAAAATTTGCAT 126840 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || || |||||||| || || | ||| || | || ||||| ||||| || || Sbjct 126872 GTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCG 126931 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | | || || || ||||| | |||||||||||| || || ||| ||| Sbjct 126932 GCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGAATTTTTGCTTTG 126991 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || |||||||| || || || ||||| || | ||||| || |||||||| || || Sbjct 126992 ACATTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTTCCCGTCAGGGTT 127051 Query 211098 TTTACAAACACCTGCATT 211115 || ||||| | |||||| Sbjct 127052 TTGACAAAGATTTGCATT 127069 >seq10177 Length=3058365 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||| || || ||||| | || || | |||||| |||||||| ||||| ||||||| Sbjct 2346113 CTTTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 2346172 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | || || ||||| || || |||| ||||||||||||||||||||| || || || | Sbjct 2346173 TGAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 2346232 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 ||||||| || || || |||||||| ||||| || || |||||||| || || || | Sbjct 2346233 CGATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGA 2346292 Query 211105 ACACCTGCAT 211114 | | |||||| Sbjct 2346293 AAATCTGCAT 2346302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158923596705335