Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq15293 123 2e-23 seq10177 82.4 7e-11 >seq15293 Length=768699 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||||| || |||||||| || |||||||| | || || || |||| ||| Sbjct 127088 ACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGGCCGTCTTCA 127147 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 || || || || || || || | ||||||||| || |||||| | || || |||||| Sbjct 127148 AGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGG-ATGCCTTCCTTGTCCTG 127206 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||||| ||||| | | | |||||| | ||| || |||| ||||||| |||| Sbjct 127207 AATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTT 127266 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||||| ||||| |||||||||||||| Sbjct 127267 TCCCGTCAGGGTTTTGACAAAGATTTGCAT 127296 Score = 104 bits (114), Expect = 2e-17 Identities = 172/245 (70%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || || | ||| || | |||||||| | || || || | Sbjct 126827 ACAAAAATTTG--CATACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCT 126884 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || || || | |||||| || |||| ||||||||||| || || || || | | Sbjct 126885 GGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATC 126944 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACC 39219 |||||| || | || | | || |||| | ||| ||| || ||||| | | | | Sbjct 126945 TCTGCTGATCTGGAGGGATTCCTTCCTTGT-CTTGAATTTTTGCTTTGACATTTTCGATC 127003 Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATT 39279 ||||| | ||| || |||| ||||||| ||||||||||||| ||||| ||||||||| Sbjct 127004 GTATCTGATGCCTCAACTTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATT 127063 Query 39280 TGCAT 39284 ||||| Sbjct 127064 TGCAT 127068 >seq10177 Length=3058365 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 ||||||| ||||| ||||||| || || ||| | || || ||||||||||| || || | Sbjct 2346113 CTTTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 2346172 Query 39155 TAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG 39214 | || ||||| || || | || | | || |||||| ||| || |||| || Sbjct 2346173 TGAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 2346232 Query 39215 CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAA 39274 | | |||||| | ||| || || | ||||| |||| ||||| || ||||| || | Sbjct 2346233 CGATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGA 2346292 Query 39275 AGATTTGCAT 39284 | || ||||| Sbjct 2346293 AAATCTGCAT 2346302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429465089597027