Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq15293 123 2e-23
seq10177 82.4 7e-11
>seq15293
Length=768699
Score = 123 bits (136), Expect = 2e-23
Identities = 155/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||||||||| || |||||||| || |||||||| | || || || |||| |||
Sbjct 127088 ACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGGCCGTCTTCA 127147
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194
|| || || || || || || | ||||||||| || |||||| | || || ||||||
Sbjct 127148 AGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGG-ATGCCTTCCTTGTCCTG 127206
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||||| ||||| | | | |||||| | ||| || |||| ||||||| ||||
Sbjct 127207 AATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTT 127266
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||||||||| ||||| ||||||||||||||
Sbjct 127267 TCCCGTCAGGGTTTTGACAAAGATTTGCAT 127296
Score = 104 bits (114), Expect = 2e-17
Identities = 172/245 (70%), Gaps = 4/245 (2%)
Strand=Plus/Plus
Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100
|| ||||||| || || || | ||| || | |||||||| | || || || |
Sbjct 126827 ACAAAAATTTG--CATACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCT 126884
Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160
| || || || || | |||||| || |||| ||||||||||| || || || || | |
Sbjct 126885 GGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATC 126944
Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACC 39219
|||||| || | || | | || |||| | ||| ||| || ||||| | | | |
Sbjct 126945 TCTGCTGATCTGGAGGGATTCCTTCCTTGT-CTTGAATTTTTGCTTTGACATTTTCGATC 127003
Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATT 39279
||||| | ||| || |||| ||||||| ||||||||||||| ||||| |||||||||
Sbjct 127004 GTATCTGATGCCTCAACTTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATT 127063
Query 39280 TGCAT 39284
|||||
Sbjct 127064 TGCAT 127068
>seq10177
Length=3058365
Score = 82.4 bits (90), Expect = 7e-11
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154
||||||| ||||| ||||||| || || ||| | || || ||||||||||| || || |
Sbjct 2346113 CTTTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 2346172
Query 39155 TAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG 39214
| || ||||| || || | || | | || |||||| ||| || |||| ||
Sbjct 2346173 TGAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 2346232
Query 39215 CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAA 39274
| | |||||| | ||| || || | ||||| |||| ||||| || ||||| || |
Sbjct 2346233 CGATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGA 2346292
Query 39275 AGATTTGCAT 39284
| || |||||
Sbjct 2346293 AAATCTGCAT 2346302
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429465089597027
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |