Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq9764 167 6e-36 seq15293 147 5e-30 seq10177 136 9e-27 seq10752 131 4e-25 seq10246 96.9 8e-15 seq11911 93.3 1e-13 seq11539 93.3 1e-13 >seq9764 Length=1320143 Score = 167 bits (184), Expect = 6e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || || || || |||||||||||||| | |||||||||| | ||| Sbjct 200551 CGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTT 200492 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || || ||||| |||||||| ||||||||||| | |||||||| || || ||||| ||| Sbjct 200491 CTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCT 200432 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || |||||||||||||| ||||||| ||| || || || |||| ||| || || | Sbjct 200431 TCTTTGTCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAACTTCGAGG 200372 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || || | |||||| | || | ||||||| Sbjct 200371 GTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCATT 200330 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || || || || |||||||||||||| | |||||||||| | ||| Sbjct 200095 CGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTT 200036 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || || ||||| |||||||| ||||||||||| | |||||||| || || ||||| ||| Sbjct 200035 CTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCT 199976 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || ||||||||||| ||||| ||| || || || |||| ||| || || | Sbjct 199975 TCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGG 199916 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || || | |||||||| ||| | |||||| Sbjct 199915 GTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 199874 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || || || || |||||||||||||| | |||||||||| | ||| Sbjct 200779 CGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTT 200720 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || || ||||| |||||||| ||||||||||| | |||||||| || || ||||| ||| Sbjct 200719 CTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCT 200660 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || ||||||||||| ||||| ||| || || || |||| ||| || || | Sbjct 200659 TCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGG 200600 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || || | |||||||| ||| | |||||| Sbjct 200599 GTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 200558 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || || || || |||||||||||||| | |||||||||| | ||| Sbjct 199867 CGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTT 199808 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || || ||||| | |||||| ||||||||||| | |||||||| || || ||||| ||| Sbjct 199807 CTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCT 199748 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || ||||||||||| || ||| || || || || || | |||||| ||||| Sbjct 199747 TCTTTATCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACCTCTAAG 199688 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || || | |||||| | || | |||||| Sbjct 199687 GTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647 Score = 150 bits (166), Expect = 4e-31 Identities = 167/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| | || | |||||| |||||||||||||||| |||||||| | | ||| Sbjct 201236 ACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGT 201177 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| || ||||| || ||||| ||||||||||| | |||||||| || || || || || Sbjct 201176 TCTGCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGGATTCC 201117 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||| || || || ||| || ||| ||||||||||| | ||| || || | Sbjct 201116 CTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAG 201057 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || || | |||||| | ||| | ||||||| Sbjct 201056 GGTGATGGTTTTACCAGTAAGAGTTTTCACGAAAATTTGCATT 201014 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || | ||| ||||| |||||||| || | |||||| || | | || Sbjct 200323 CGAAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGTC 200264 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || || ||||| | |||||| ||||||||||| | |||||||| || || ||||| ||| Sbjct 200263 CTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCT 200204 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || |||||||||||||| ||| || ||| || ||||| |||| ||| || || | Sbjct 200203 TCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGG 200144 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || || || | |||||| | ||| | |||||| Sbjct 200143 GTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCATT 200102 Score = 136 bits (150), Expect = 9e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||| |||||||| || | |||||| || | | || || || ||||| | ||| Sbjct 200990 GTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGTCCTACCGTCTTCCAACTG 200931 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||||||||| | |||||||| || || ||||| ||||| |||||||||||||| Sbjct 200930 CTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTT 200871 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || ||| || ||||| |||| ||| || || | ||||| || || || || Sbjct 200870 GGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTGATGGTTTTCCCAGT 200811 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 | |||||| | ||| | |||||| Sbjct 200810 GAGAGTTTTCACGAAGATCTGCATT 200786 >seq15293 Length=768699 Score = 147 bits (162), Expect = 5e-30 Identities = 166/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||||| || |||||||| || || ||||||||||| | |||||| |||| |||||| | Sbjct 125710 AAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGACAAAGTCCG 125769 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 ||||| || ||||| || || ||||| || |||| |||||| ||||| ||||| ||||| Sbjct 125770 TCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTC 125829 Query 225615 CTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673 || ||||| || ||| || ||||| ||||| ||||| || | ||| || || || | Sbjct 125830 TTTATCTTGAAT-TTTCGCTTTCACGTTCTCGATCGTGTCAGACGCTTCGACCTCCAATG 125888 Query 225674 TGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||| || || || || | ||| || | ||| | ||||| Sbjct 125889 TGATAGTTTTACCAGTGAGAGTCTTGACGAAAATCTGCAT 125928 Score = 109 bits (120), Expect = 1e-18 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| || |||| ||||| || | | || | || ||||| ||||| || || Sbjct 126872 GTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCG 126931 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 ||||| || | || || || || || || || |||||||||||||| || |||||| || Sbjct 126932 GCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGAAT-TTTTGCTTT 126990 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| |||||| || ||||| | || || || |||||||| || || ||||||| || Sbjct 126991 GACATTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTTCCCGTCAGGGT 127050 Query 225696 TTTTATGAACACTTGCATT 225714 ||| | || | ||||||| Sbjct 127051 TTTGACAAAGATTTGCATT 127069 Score = 109 bits (120), Expect = 1e-18 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | || ||||| | | ||| | || ||||| || ||||| || Sbjct 127100 GTCGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCG 127159 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 |||||||| | || || || || || || || ||||||||||| || || ||| || || Sbjct 127160 GCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTGTCCTGAAT-TTTGGCTTT 127218 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || |||||| || ||||| | || || || |||||||| || || ||||||| || Sbjct 127219 GACGTTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTTCCCGTCAGGGT 127278 Query 225696 TTTTATGAACACTTGCATT 225714 ||| | || | ||||||| Sbjct 127279 TTTGACAAAGATTTGCATT 127297 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | || ||||| | | ||| | || ||||| || ||||| || Sbjct 127328 GTTGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGACCGTCTTCAAGTTGCTTTCCG 127387 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 |||||||| | || || || || || || || |||||||| |||||||||||| || Sbjct 127388 GCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGGATCTTTGCTTTT 127447 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || || ||||| || || | || || || | || || ||||| || ||||| || Sbjct 127448 ACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAGAGTTATGGTCTTCCCGGTCAACGTC 127507 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | ||||| Sbjct 127508 TTCACGAAAATCTGCAT 127524 >seq10177 Length=3058365 Score = 136 bits (150), Expect = 9e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||||| | ||||||||||| || ||| | ||||| || ||||| || |||||||||| Sbjct 2346113 CTTTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 2346172 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | ||||| ||||| || || ||||| ||||||||||| |||||||| ||| ||| | Sbjct 2346173 TGAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 2346232 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 ||||||| || || | || || || | ||||| || || ||||| | ||||| | || Sbjct 2346233 CGATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGA 2346292 Query 225704 ACACTTGCAT 225713 | | ||||| Sbjct 2346293 AAATCTGCAT 2346302 >seq10752 Length=6852325 Score = 131 bits (144), Expect = 4e-25 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| |||||||| || ||||| |||||||| |||||||| |||||||| Sbjct 330299 GAAGATTTGACCATCGGTAATAGAAATTACATTGGTAGGGATGTAAGCAGATACATCACC 330240 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||||||||| | |||||||| || || | ||||||||||| ||||||| ||| Sbjct 330239 GGCTTGTGTTTCAATTACAGGTAAAGCAGTCAACGATCCACCACCTAAATTTTCATT 330183 >seq10246 Length=13792 Score = 96.9 bits (106), Expect = 8e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || ||||| ||||| ||||||||||||||||| ||||| || || || ||||| Sbjct 7989 TTCAGGGTGGCCAAAGAATCAAAATAAATGTTGATAAAGAATAGGGTCTCCACCTCCTGA 7930 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGT 370767 |||||||| || |||||| || |||| |||||| Sbjct 7929 GGGATCAAAGAATGAAGTATTTAAGTTTCGATCAGT 7894 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 7579 CATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAAT 7638 ||||| ||| |||| ||||| ||| | ||||| || |||| || || || || |||||| Sbjct 7444 CATGCATTTATTATAATTTTTTTTATAGTTATACCCTTTATAATTGGGGGATTTGGAAAT 7503 Query 7639 TGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATA 7698 | | |||||||||||| | ||| |||| ||||| ||||| || | | || || ||| Sbjct 7504 TTTCTTGTTCCTTTAATGTTAGGTTCTCCCGATATAGCTTTCCCCCGAATAAATAACATA 7563 Query 7699 AGTTTTTGATTACTACCGCCTTCCTTA 7725 || || ||| | | || ||||||||| Sbjct 7564 AGATTCTGACTTTTGCCTCCTTCCTTA 7590 >seq11911 Length=54093 Score = 93.3 bits (102), Expect = 1e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 370682 CCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCAAAA 370741 ||||||||||| ||||||||||||||||| |||||||| || || ||||| || || || Sbjct 2042 CCAAAAAATCAAAATAAATGTTGATAAAGAATAGGATCTCCACCACCTGAGGGGTCGAAG 1983 Query 370742 AAGCTAGTATTAAAATTTCTATCAGT 370767 || |||||| ||||||| |||||| Sbjct 1982 AATGAAGTATTTAAATTTCGATCAGT 1957 >seq11539 Length=11190 Score = 93.3 bits (102), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| |||||||| ||||| ||||||||||| ||||| ||||| || || || ||||| Sbjct 1760 TTCAGGGTGACCAAAGAATCAAAATAAATGTTGGTAAAGAATAGGGTCTCCCCCCCCTGA 1819 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGT 370767 ||||| || || |||||| ||||||| ||||| Sbjct 1820 GGGATCGAAGAATGAAGTATTTAAATTTCGGTCAGT 1855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192296219553026