Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq9764 167 6e-36
seq15293 147 5e-30
seq10177 136 9e-27
seq10752 131 4e-25
seq10246 96.9 8e-15
seq11911 93.3 1e-13
seq11539 93.3 1e-13
>seq9764
Length=1320143
Score = 167 bits (184), Expect = 6e-36
Identities = 170/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | ||| || || || || |||||||||||||| | |||||||||| | |||
Sbjct 200551 CGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTT 200492
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
|| || ||||| |||||||| ||||||||||| | |||||||| || || ||||| |||
Sbjct 200491 CTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCT 200432
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|| |||||||||||||| ||||||| ||| || || || |||| ||| || || |
Sbjct 200431 TCTTTGTCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAACTTCGAGG 200372
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||||| || || || || | |||||| | || | |||||||
Sbjct 200371 GTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCATT 200330
Score = 158 bits (174), Expect = 3e-33
Identities = 168/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | ||| || || || || |||||||||||||| | |||||||||| | |||
Sbjct 200095 CGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTT 200036
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
|| || ||||| |||||||| ||||||||||| | |||||||| || || ||||| |||
Sbjct 200035 CTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCT 199976
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|| || ||||||||||| ||||| ||| || || || |||| ||| || || |
Sbjct 199975 TCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGG 199916
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||||| || || || || | |||||||| ||| | ||||||
Sbjct 199915 GTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 199874
Score = 158 bits (174), Expect = 3e-33
Identities = 168/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | ||| || || || || |||||||||||||| | |||||||||| | |||
Sbjct 200779 CGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTT 200720
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
|| || ||||| |||||||| ||||||||||| | |||||||| || || ||||| |||
Sbjct 200719 CTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCT 200660
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|| || ||||||||||| ||||| ||| || || || |||| ||| || || |
Sbjct 200659 TCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAACTTCAAGG 200600
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||||| || || || || | |||||||| ||| | ||||||
Sbjct 200599 GTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 200558
Score = 150 bits (166), Expect = 4e-31
Identities = 166/221 (75%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | ||| || || || || |||||||||||||| | |||||||||| | |||
Sbjct 199867 CGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAGAGTGTT 199808
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
|| || ||||| | |||||| ||||||||||| | |||||||| || || ||||| |||
Sbjct 199807 CTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCT 199748
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|| || ||||||||||| || ||| || || || || || | |||||| |||||
Sbjct 199747 TCTTTATCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCACCTCTAAG 199688
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || || || || | |||||| | || | ||||||
Sbjct 199687 GTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647
Score = 150 bits (166), Expect = 4e-31
Identities = 167/223 (75%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||||| | || | |||||| |||||||||||||||| |||||||| | | |||
Sbjct 201236 ACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGT 201177
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
||| || ||||| || ||||| ||||||||||| | |||||||| || || || || ||
Sbjct 201176 TCTGCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGGATTCC 201117
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|| ||||| || || || ||| || ||| ||||||||||| | ||| || || |
Sbjct 201116 CTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAG 201057
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||||| || || || || | |||||| | ||| | |||||||
Sbjct 201056 GGTGATGGTTTTACCAGTAAGAGTTTTCACGAAAATTTGCATT 201014
Score = 143 bits (158), Expect = 6e-29
Identities = 165/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | ||| || | ||| ||||| |||||||| || | |||||| || | | ||
Sbjct 200323 CGAAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGTC 200264
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
|| || ||||| | |||||| ||||||||||| | |||||||| || || ||||| |||
Sbjct 200263 CTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCT 200204
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|| |||||||||||||| ||| || ||| || ||||| |||| ||| || || |
Sbjct 200203 TCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGG 200144
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||||| || || || || | |||||| | ||| | ||||||
Sbjct 200143 GTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCATT 200102
Score = 136 bits (150), Expect = 9e-27
Identities = 153/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569
||| ||||| |||||||| || | |||||| || | | || || || ||||| | |||
Sbjct 200990 GTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGTCCTACCGTCTTCCAACTG 200931
Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629
||| ||||||||||| | |||||||| || || ||||| ||||| ||||||||||||||
Sbjct 200930 CTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGGATCTT 200871
Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
||| || ||| || ||||| |||| ||| || || | ||||| || || || ||
Sbjct 200870 GGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTGATGGTTTTCCCAGT 200811
Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714
| |||||| | ||| | ||||||
Sbjct 200810 GAGAGTTTTCACGAAGATCTGCATT 200786
>seq15293
Length=768699
Score = 147 bits (162), Expect = 5e-30
Identities = 166/220 (75%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554
||||| || |||||||| || || ||||||||||| | |||||| |||| |||||| |
Sbjct 125710 AAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGACAAAGTCCG 125769
Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614
||||| || ||||| || || ||||| || |||| |||||| ||||| ||||| |||||
Sbjct 125770 TCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTC 125829
Query 225615 CTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673
|| ||||| || ||| || ||||| ||||| ||||| || | ||| || || || |
Sbjct 125830 TTTATCTTGAAT-TTTCGCTTTCACGTTCTCGATCGTGTCAGACGCTTCGACCTCCAATG 125888
Query 225674 TGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||| || || || || | ||| || | ||| | |||||
Sbjct 125889 TGATAGTTTTACCAGTGAGAGTCTTGACGAAAATCTGCAT 125928
Score = 109 bits (120), Expect = 1e-18
Identities = 145/199 (73%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
|| ||||| || |||| ||||| || | | || | || ||||| ||||| || ||
Sbjct 126872 GTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCG 126931
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635
||||| || | || || || || || || || |||||||||||||| || |||||| ||
Sbjct 126932 GCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGAAT-TTTTGCTTT 126990
Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695
||| |||||| || ||||| | || || || |||||||| || || ||||||| ||
Sbjct 126991 GACATTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTTCCCGTCAGGGT 127050
Query 225696 TTTTATGAACACTTGCATT 225714
||| | || | |||||||
Sbjct 127051 TTTGACAAAGATTTGCATT 127069
Score = 109 bits (120), Expect = 1e-18
Identities = 145/199 (73%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
|| ||||||||||| | || ||||| | | ||| | || ||||| || ||||| ||
Sbjct 127100 GTCGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCG 127159
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635
|||||||| | || || || || || || || ||||||||||| || || ||| || ||
Sbjct 127160 GCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTGTCCTGAAT-TTTGGCTTT 127218
Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695
|| |||||| || ||||| | || || || |||||||| || || ||||||| ||
Sbjct 127219 GACGTTTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTTCCCGTCAGGGT 127278
Query 225696 TTTTATGAACACTTGCATT 225714
||| | || | |||||||
Sbjct 127279 TTTGACAAAGATTTGCATT 127297
Score = 95.1 bits (104), Expect = 3e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
|| ||||||||||| | || ||||| | | ||| | || ||||| || ||||| ||
Sbjct 127328 GTTGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGACCGTCTTCAAGTTGCTTTCCG 127387
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636
|||||||| | || || || || || || || |||||||| |||||||||||| ||
Sbjct 127388 GCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGGATCTTTGCTTTT 127447
Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696
|| || ||||| || || | || || || | || || ||||| || ||||| ||
Sbjct 127448 ACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAGAGTTATGGTCTTCCCGGTCAACGTC 127507
Query 225697 TTTATGAACACTTGCAT 225713
|| | ||| | |||||
Sbjct 127508 TTCACGAAAATCTGCAT 127524
>seq10177
Length=3058365
Score = 136 bits (150), Expect = 9e-27
Identities = 144/190 (76%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583
||||||| | ||||||||||| || ||| | ||||| || ||||| || ||||||||||
Sbjct 2346113 CTTTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 2346172
Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643
| ||||| ||||| || || ||||| ||||||||||| |||||||| ||| ||| |
Sbjct 2346173 TGAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 2346232
Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703
||||||| || || | || || || | ||||| || || ||||| | ||||| | ||
Sbjct 2346233 CGATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGA 2346292
Query 225704 ACACTTGCAT 225713
| | |||||
Sbjct 2346293 AAATCTGCAT 2346302
>seq10752
Length=6852325
Score = 131 bits (144), Expect = 4e-25
Identities = 99/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| ||||||||||| |||||||| || ||||| |||||||| |||||||| ||||||||
Sbjct 330299 GAAGATTTGACCATCGGTAATAGAAATTACATTGGTAGGGATGTAAGCAGATACATCACC 330240
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586
||||||||||| | |||||||| || || | ||||||||||| ||||||| |||
Sbjct 330239 GGCTTGTGTTTCAATTACAGGTAAAGCAGTCAACGATCCACCACCTAAATTTTCATT 330183
>seq10246
Length=13792
Score = 96.9 bits (106), Expect = 8e-15
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
|||||| || ||||| ||||| ||||||||||||||||| ||||| || || || |||||
Sbjct 7989 TTCAGGGTGGCCAAAGAATCAAAATAAATGTTGATAAAGAATAGGGTCTCCACCTCCTGA 7930
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGT 370767
|||||||| || |||||| || |||| ||||||
Sbjct 7929 GGGATCAAAGAATGAAGTATTTAAGTTTCGATCAGT 7894
Score = 95.1 bits (104), Expect = 3e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 7579 CATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAAT 7638
||||| ||| |||| ||||| ||| | ||||| || |||| || || || || ||||||
Sbjct 7444 CATGCATTTATTATAATTTTTTTTATAGTTATACCCTTTATAATTGGGGGATTTGGAAAT 7503
Query 7639 TGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATA 7698
| | |||||||||||| | ||| |||| ||||| ||||| || | | || || |||
Sbjct 7504 TTTCTTGTTCCTTTAATGTTAGGTTCTCCCGATATAGCTTTCCCCCGAATAAATAACATA 7563
Query 7699 AGTTTTTGATTACTACCGCCTTCCTTA 7725
|| || ||| | | || |||||||||
Sbjct 7564 AGATTCTGACTTTTGCCTCCTTCCTTA 7590
>seq11911
Length=54093
Score = 93.3 bits (102), Expect = 1e-13
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 370682 CCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCAAAA 370741
||||||||||| ||||||||||||||||| |||||||| || || ||||| || || ||
Sbjct 2042 CCAAAAAATCAAAATAAATGTTGATAAAGAATAGGATCTCCACCACCTGAGGGGTCGAAG 1983
Query 370742 AAGCTAGTATTAAAATTTCTATCAGT 370767
|| |||||| ||||||| ||||||
Sbjct 1982 AATGAAGTATTTAAATTTCGATCAGT 1957
>seq11539
Length=11190
Score = 93.3 bits (102), Expect = 1e-13
Identities = 78/96 (81%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
|||||| |||||||| ||||| ||||||||||| ||||| ||||| || || || |||||
Sbjct 1760 TTCAGGGTGACCAAAGAATCAAAATAAATGTTGGTAAAGAATAGGGTCTCCCCCCCCTGA 1819
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGT 370767
||||| || || |||||| ||||||| |||||
Sbjct 1820 GGGATCGAAGAATGAAGTATTTAAATTTCGGTCAGT 1855
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192296219553026
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