Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_030943.1
Length=54990
Score E
Sequences producing significant alignments: (Bits) Value
seq14069 396 9e-106
seq12754 181 4e-41
seq3711 138 4e-28
seq4161 122 3e-23
seq5769 98.7 3e-16
>seq14069
Length=58536
Score = 396 bits (438), Expect = 9e-106
Identities = 458/609 (75%), Gaps = 15/609 (2%)
Strand=Plus/Plus
Query 52777 TGAATCGCCCCGGGTTTGCTGGAGGCTCGGTTAGTTGGTTCCAGCGTTTGCGGGGACCGG 52836
|||||||||| |||||| ||||||||||||| ||||||| | || | ||||||| |
Sbjct 54216 TGAATCGCCCTGGGTTTTGTGGAGGCTCGGTTGGTTGGTTTCGGCCTCGACGGGGAC-GT 54274
Query 52837 GTTCTC-ACGGTAG-CTGGTGACGGTTTGGGTCGACCAGTAGGCGCTCTCGTACTCGACG 52894
||||| | |||| | || || | || | | || |||||| || ||| ||
Sbjct 54275 GTTCTTGAGGGTAATCAACCGATGGCTGGGAT-GCGCAATAGGCGG-CT-----TCGGCG 54327
Query 52895 GGTGGGACGTGTCCGATCTCGCCGTGCAGGCGGCGGTGGTTGAACCATTCGACGTACTCA 52954
||||||| |||||||||||||| ||||| |||||||||||||| |||| || ||
Sbjct 54328 GGTGGGAGCATACCGATCTCGCCGTGGAGGCGCCGGTGGTTGAACCAGTCGATGTTTTCG 54387
Query 52955 GCGACGGCGATCTCGACCTCGCCCACACCTGCCCAGCCGCCTCGCGGGCGCATCACGGGG 53014
||||||||||||||||| |||| | | ||||||||||| |||||||| | |||
Sbjct 54388 GCGACGGCGATCTCGACGTCGCGGATAGACGCCCAGCCGCCCTTGGGGCGCATGGCCGGG 54447
Query 53015 TTACGGATGCATTCGGCTTTGAACAGCGAGTTGAACGCCTCAGCCATCGCGTTGTCGTAT 53074
|| |||||||| ||| | ||||| || |||||||||||||| || | |||| | ||
Sbjct 54448 TTGCGGATGCACTCGACCTTGAAGAGGGAGTTGAACGCCTCGGCGAGGGCGT---CATAC 54504
Query 53075 GAATCCCCTTTGGAGCCAACAGATGTCACCGCTTCGGCTTCG--GCCAGTCGTTCGGTGT 53132
||||| || ||||| || || || | || || || || ||| || || || |||||||
Sbjct 54505 GAATCGCCCTTGGATCCGACGGAGGCGACGGCCTCAGCCTCGCGGCGAGGCGCTCGGTGT 54564
Query 53133 AGCGGATGGCTCGGTATTGCACTCCGCGGTCGGAGTGGTGGATCAGCCCGGCCACGTCGT 53192
||||||| ||||| || || |||||||||||| ||||||||| || |||| ||||| |
Sbjct 54565 AGCGGATCGCTCGATACTGGACTCCGCGGTCGCTGTGGTGGATGAGGCCGGTGACGTCTT 54624
Query 53193 GGCCGGCACGCGACCGTGCCCACAATCCCATGTTCAGGGCGTCGAGGGCGAGGTCGGTGT 53252
| |||| || ||| ||| | ||||||| || |||||||||| |||||| ||||
Sbjct 54625 GCCCGGTGCGGTGGCGTTGCCAGAGGCCCATGTCGAGCGCGTCGAGGGAGAGGTCCGTGT 54684
Query 53253 GCATGGTGGTCGAGACCTGCCAGCCGACGACCATCCGCGAGAACACGTCCAGGACGAACG 53312
| | ||| |||||||||||||||| || | || ||||||||| ||||||||
Sbjct 54685 AGAGGTGGGTGGAGACCTGCCAGCCGATCACGAGGCGACTGAACACGTCGGTGACGAACG 54744
Query 53313 CCGCGTACACCCAGCCCGAGTGGGTGCGGATGTAGGTCAGGTCCGCCACCCACAACGCGT 53372
| ||||| |||||||| | ||||||||||||||||||||| || || ||||| | | ||
Sbjct 54745 CGGCGTAGACCCAGCCGGCGTGGGTGCGGATGTAGGTCAGATCGGCGACCCAGAGCTGGT 54804
Query 53373 TCGGTGCCG 53381
|||||||||
Sbjct 54805 TCGGTGCCG 54813
Score = 109 bits (120), Expect = 2e-19
Identities = 129/171 (75%), Gaps = 14/171 (8%)
Strand=Plus/Plus
Query 53977 TCGGCGATCCGCTTGATCGC----ACCT--CTCGACGAATCGGGATCTCGTCGCGCTTCA 54030
|| ||||||||||||||||| |||| |||| || | || || | ||| ||
Sbjct 55029 TCCGCGATCCGCTTGATCGCCCCCACCTTGCTCGCCG------GGTCACGACACGCCTCC 55082
Query 54031 CATGCCATCCGGGTGGCCCGGTCCTTGAGTTCCTCACTGTACTTGCGTGGTGCTGCCATG 54090
| |||| ||| || ||||| ||||| | |||||| |||| ||| | | ||||||||||
Sbjct 55083 AACGCCAACCGCGTCGCCCGCTCCTTCAATTCCTCGCTGTCCTTCCTCGATGCTGCCATG 55142
Query 54091 -CTCTCCATCCTTCACAGGTTCGAGAGCCTCCGACAGACCCGGGGCGGTTC 54140
||||| |||||||||||||| |||||||||| || ||||||| || |||
Sbjct 55143 ACTCTC-ATCCTTCACAGGTTTGAGAGCCTCCATCACACCCGGGACGCTTC 55192
>seq12754
Length=666
Score = 181 bits (200), Expect = 4e-41
Identities = 202/270 (75%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 53130 TGTAGCGGATGGCTCGGTATTGCACTCCGCGGTCGGAGTGGTGGATCAGCCCGGCCACGT 53189
|||||||||||| ||||||||| ||||| |||||| ||||||||| || | || || ||
Sbjct 1 TGTAGCGGATGGATCGGTATTGGACTCCTCGGTCGCTGTGGTGGATGAGTCTGGTCAGGT 60
Query 53190 CGTGGCCGGCACGCGACCGTGCCCACAATCCCATGTTCAGGGCGTCGAGGGCGAGGTCGG 53249
|| ||| | || ||| ||| | ||| | ||| || || || ||||| ||||
Sbjct 61 CGGCGCCTTCGCGTTCGCGTCGCCAGATGCCCGTCGTCAACGCATCCAGCGCGAGATCGG 120
Query 53250 TGTGCATGGTGGTCGAGACCTGCCAGCCGACGACCATCCGCGAGAACACGTCCAGGACGA 53309
| | || | || ||||||||||||||| ||| ||| || ||| ||||||| || ||||
Sbjct 121 TATACAGCGACGTGGAGACCTGCCAGCCGGCGATCATGCGGGAGTACACGTCGAGTACGA 180
Query 53310 ACGCCGCGTACACCCAGCCCGAGTGGGTGCGGATGTAGGTCAGGTCCGCCACCCACAACG 53369
|||||||||| |||||||| | | |||||| | |||||| | || || ||||| | |
Sbjct 181 ACGCCGCGTAGACCCAGCCGGCGAAGGTGCGCACGTAGGTGATATCGGCGACCCAGAGCC 240
Query 53370 CGTTCGGTGCCGCCGCGGTGAACTGACGGT 53399
|||||||||| | ||| |||||| ||||
Sbjct 241 GGTTCGGTGCCTCGGCGTGGAACTGCCGGT 270
>seq3711
Length=236
Score = 138 bits (152), Expect = 4e-28
Identities = 126/159 (79%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 53261 GTCGAGACCTGCCAGCCGACGACCATCCGCGAGAACACGTCCAGGACGAACGCCGCGTAC 53320
|| ||||||||||||||||||| ||| || ||| ||||||| ||||||||| |||||
Sbjct 222 GTGGAGACCTGCCAGCCGACGATCATGCGAGAGTACACGTCGGTGACGAACGCGACGTAC 163
Query 53321 ACCCAGCCCGAGTGGGTGCGGATGTAGGTCAGGTCCGCCACCCACAACGCGTTCGGTGCC 53380
||||| |||||| ||||| | |||||| | |||||| ||||||||| |||||||
Sbjct 162 ACCCACCCCGAGAACGTGCGCACGTAGGTGATGTCCGCGACCCACAACTCGTTCGGGCGG 103
Query 53381 GCCGCGGTGAACTGACGGTTGACCCGGTCAGCCGGCCGG 53419
| |||| |||||| ||||| ||| |||| |||||||
Sbjct 102 GACGCGACGAACTGCCGGTTCACCAGGTCCAGCGGCCGG 64
>seq4161
Length=244
Score = 122 bits (134), Expect = 3e-23
Identities = 135/180 (75%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 53820 CTTCAAGATCGTGTTCGCTCGCCGCAGTTCACGGTTCTCCCGCTCCAACGCCGCGATGCG 53879
||||| ||||| |||| |||||||| || ||| |||| | ||| | || |||| ||
Sbjct 237 CTTCAGGATCGCCCTCGCCCGCCGCAGCTCGCGGACCTCCTTCCCCAGCTCCACGATCCG 178
Query 53880 GTCAGCGTCCTCACTCGTGGTGCCCGGGCGGACCCCGCCGTCGATCTCGGCCTGACGAAC 53939
| |||||| | |||||||||||||||| | || || || |||||||||| ||
Sbjct 177 CGCCGCGTCCACCGTCGTGGTGCCCGGGCGCAGGCCCTCGCCGGTCTCGGCCTGCTTCAC 118
Query 53940 CCAATTGCGCAACGCCTCGGGATGGACTCCGAGCTGATCGGCGATCCGCTTGATCGCACC 53999
||| | |||||| ||||||| || || ||||||||||| |||| ||||| | ||||||
Sbjct 117 CCAGGTCCGCAACACCTCGGGGTGCACCCCGAGCTGATCACCGATGCGCTTAAACGCACC 58
>seq5769
Length=288
Score = 98.7 bits (108), Expect = 3e-16
Identities = 120/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 53827 ATCGTGTTCGCTCGCCGCAGTTCACGGTTCTCCCGCTCCAACGCCGCGATGCGGTCAGCG 53886
|||| |||||| |||||||| || ||| |||| ||||| || |||| || | |||
Sbjct 1 ATCGCGTTCGCCCGCCGCAGCTCGCGGACCTCCTTCTCCAGTTCCACGATCCGCGCCGCG 60
Query 53887 TCCTCACTCGTGGTGCCCGGGCGGACCCCGCCGTCGATCTCGGCCTGACGAACCCAATTG 53946
||| | |||||||||||||||| | || | ||| |||||||||| ||||| |
Sbjct 61 TCCACCGTCGTGGTGCCCGGGCGCAGGCCCTCATCGGTCTCGGCCTGCTTCACCCAGGTC 120
Query 53947 CGCAACGCCTCGGGATGGACTCCGAGCTGATCGGCGATCCGCTT 53990
|||| || ||||| || || ||||| || || |||| |||||
Sbjct 121 CGCAGGGCTTCGGGGTGCACCCCGAGTTGGTCACCGATGCGCTT 164
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 175814285941296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |