Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_030943.1 Length=54990 Score E Sequences producing significant alignments: (Bits) Value seq14069 396 9e-106 seq12754 181 4e-41 seq3711 138 4e-28 seq4161 122 3e-23 seq5769 98.7 3e-16 >seq14069 Length=58536 Score = 396 bits (438), Expect = 9e-106 Identities = 458/609 (75%), Gaps = 15/609 (2%) Strand=Plus/Plus Query 52777 TGAATCGCCCCGGGTTTGCTGGAGGCTCGGTTAGTTGGTTCCAGCGTTTGCGGGGACCGG 52836 |||||||||| |||||| ||||||||||||| ||||||| | || | ||||||| | Sbjct 54216 TGAATCGCCCTGGGTTTTGTGGAGGCTCGGTTGGTTGGTTTCGGCCTCGACGGGGAC-GT 54274 Query 52837 GTTCTC-ACGGTAG-CTGGTGACGGTTTGGGTCGACCAGTAGGCGCTCTCGTACTCGACG 52894 ||||| | |||| | || || | || | | || |||||| || ||| || Sbjct 54275 GTTCTTGAGGGTAATCAACCGATGGCTGGGAT-GCGCAATAGGCGG-CT-----TCGGCG 54327 Query 52895 GGTGGGACGTGTCCGATCTCGCCGTGCAGGCGGCGGTGGTTGAACCATTCGACGTACTCA 52954 ||||||| |||||||||||||| ||||| |||||||||||||| |||| || || Sbjct 54328 GGTGGGAGCATACCGATCTCGCCGTGGAGGCGCCGGTGGTTGAACCAGTCGATGTTTTCG 54387 Query 52955 GCGACGGCGATCTCGACCTCGCCCACACCTGCCCAGCCGCCTCGCGGGCGCATCACGGGG 53014 ||||||||||||||||| |||| | | ||||||||||| |||||||| | ||| Sbjct 54388 GCGACGGCGATCTCGACGTCGCGGATAGACGCCCAGCCGCCCTTGGGGCGCATGGCCGGG 54447 Query 53015 TTACGGATGCATTCGGCTTTGAACAGCGAGTTGAACGCCTCAGCCATCGCGTTGTCGTAT 53074 || |||||||| ||| | ||||| || |||||||||||||| || | |||| | || Sbjct 54448 TTGCGGATGCACTCGACCTTGAAGAGGGAGTTGAACGCCTCGGCGAGGGCGT---CATAC 54504 Query 53075 GAATCCCCTTTGGAGCCAACAGATGTCACCGCTTCGGCTTCG--GCCAGTCGTTCGGTGT 53132 ||||| || ||||| || || || | || || || || ||| || || || ||||||| Sbjct 54505 GAATCGCCCTTGGATCCGACGGAGGCGACGGCCTCAGCCTCGCGGCGAGGCGCTCGGTGT 54564 Query 53133 AGCGGATGGCTCGGTATTGCACTCCGCGGTCGGAGTGGTGGATCAGCCCGGCCACGTCGT 53192 ||||||| ||||| || || |||||||||||| ||||||||| || |||| ||||| | Sbjct 54565 AGCGGATCGCTCGATACTGGACTCCGCGGTCGCTGTGGTGGATGAGGCCGGTGACGTCTT 54624 Query 53193 GGCCGGCACGCGACCGTGCCCACAATCCCATGTTCAGGGCGTCGAGGGCGAGGTCGGTGT 53252 | |||| || ||| ||| | ||||||| || |||||||||| |||||| |||| Sbjct 54625 GCCCGGTGCGGTGGCGTTGCCAGAGGCCCATGTCGAGCGCGTCGAGGGAGAGGTCCGTGT 54684 Query 53253 GCATGGTGGTCGAGACCTGCCAGCCGACGACCATCCGCGAGAACACGTCCAGGACGAACG 53312 | | ||| |||||||||||||||| || | || ||||||||| |||||||| Sbjct 54685 AGAGGTGGGTGGAGACCTGCCAGCCGATCACGAGGCGACTGAACACGTCGGTGACGAACG 54744 Query 53313 CCGCGTACACCCAGCCCGAGTGGGTGCGGATGTAGGTCAGGTCCGCCACCCACAACGCGT 53372 | ||||| |||||||| | ||||||||||||||||||||| || || ||||| | | || Sbjct 54745 CGGCGTAGACCCAGCCGGCGTGGGTGCGGATGTAGGTCAGATCGGCGACCCAGAGCTGGT 54804 Query 53373 TCGGTGCCG 53381 ||||||||| Sbjct 54805 TCGGTGCCG 54813 Score = 109 bits (120), Expect = 2e-19 Identities = 129/171 (75%), Gaps = 14/171 (8%) Strand=Plus/Plus Query 53977 TCGGCGATCCGCTTGATCGC----ACCT--CTCGACGAATCGGGATCTCGTCGCGCTTCA 54030 || ||||||||||||||||| |||| |||| || | || || | ||| || Sbjct 55029 TCCGCGATCCGCTTGATCGCCCCCACCTTGCTCGCCG------GGTCACGACACGCCTCC 55082 Query 54031 CATGCCATCCGGGTGGCCCGGTCCTTGAGTTCCTCACTGTACTTGCGTGGTGCTGCCATG 54090 | |||| ||| || ||||| ||||| | |||||| |||| ||| | | |||||||||| Sbjct 55083 AACGCCAACCGCGTCGCCCGCTCCTTCAATTCCTCGCTGTCCTTCCTCGATGCTGCCATG 55142 Query 54091 -CTCTCCATCCTTCACAGGTTCGAGAGCCTCCGACAGACCCGGGGCGGTTC 54140 ||||| |||||||||||||| |||||||||| || ||||||| || ||| Sbjct 55143 ACTCTC-ATCCTTCACAGGTTTGAGAGCCTCCATCACACCCGGGACGCTTC 55192 >seq12754 Length=666 Score = 181 bits (200), Expect = 4e-41 Identities = 202/270 (75%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 53130 TGTAGCGGATGGCTCGGTATTGCACTCCGCGGTCGGAGTGGTGGATCAGCCCGGCCACGT 53189 |||||||||||| ||||||||| ||||| |||||| ||||||||| || | || || || Sbjct 1 TGTAGCGGATGGATCGGTATTGGACTCCTCGGTCGCTGTGGTGGATGAGTCTGGTCAGGT 60 Query 53190 CGTGGCCGGCACGCGACCGTGCCCACAATCCCATGTTCAGGGCGTCGAGGGCGAGGTCGG 53249 || ||| | || ||| ||| | ||| | ||| || || || ||||| |||| Sbjct 61 CGGCGCCTTCGCGTTCGCGTCGCCAGATGCCCGTCGTCAACGCATCCAGCGCGAGATCGG 120 Query 53250 TGTGCATGGTGGTCGAGACCTGCCAGCCGACGACCATCCGCGAGAACACGTCCAGGACGA 53309 | | || | || ||||||||||||||| ||| ||| || ||| ||||||| || |||| Sbjct 121 TATACAGCGACGTGGAGACCTGCCAGCCGGCGATCATGCGGGAGTACACGTCGAGTACGA 180 Query 53310 ACGCCGCGTACACCCAGCCCGAGTGGGTGCGGATGTAGGTCAGGTCCGCCACCCACAACG 53369 |||||||||| |||||||| | | |||||| | |||||| | || || ||||| | | Sbjct 181 ACGCCGCGTAGACCCAGCCGGCGAAGGTGCGCACGTAGGTGATATCGGCGACCCAGAGCC 240 Query 53370 CGTTCGGTGCCGCCGCGGTGAACTGACGGT 53399 |||||||||| | ||| |||||| |||| Sbjct 241 GGTTCGGTGCCTCGGCGTGGAACTGCCGGT 270 >seq3711 Length=236 Score = 138 bits (152), Expect = 4e-28 Identities = 126/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 53261 GTCGAGACCTGCCAGCCGACGACCATCCGCGAGAACACGTCCAGGACGAACGCCGCGTAC 53320 || ||||||||||||||||||| ||| || ||| ||||||| ||||||||| ||||| Sbjct 222 GTGGAGACCTGCCAGCCGACGATCATGCGAGAGTACACGTCGGTGACGAACGCGACGTAC 163 Query 53321 ACCCAGCCCGAGTGGGTGCGGATGTAGGTCAGGTCCGCCACCCACAACGCGTTCGGTGCC 53380 ||||| |||||| ||||| | |||||| | |||||| ||||||||| ||||||| Sbjct 162 ACCCACCCCGAGAACGTGCGCACGTAGGTGATGTCCGCGACCCACAACTCGTTCGGGCGG 103 Query 53381 GCCGCGGTGAACTGACGGTTGACCCGGTCAGCCGGCCGG 53419 | |||| |||||| ||||| ||| |||| ||||||| Sbjct 102 GACGCGACGAACTGCCGGTTCACCAGGTCCAGCGGCCGG 64 >seq4161 Length=244 Score = 122 bits (134), Expect = 3e-23 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 53820 CTTCAAGATCGTGTTCGCTCGCCGCAGTTCACGGTTCTCCCGCTCCAACGCCGCGATGCG 53879 ||||| ||||| |||| |||||||| || ||| |||| | ||| | || |||| || Sbjct 237 CTTCAGGATCGCCCTCGCCCGCCGCAGCTCGCGGACCTCCTTCCCCAGCTCCACGATCCG 178 Query 53880 GTCAGCGTCCTCACTCGTGGTGCCCGGGCGGACCCCGCCGTCGATCTCGGCCTGACGAAC 53939 | |||||| | |||||||||||||||| | || || || |||||||||| || Sbjct 177 CGCCGCGTCCACCGTCGTGGTGCCCGGGCGCAGGCCCTCGCCGGTCTCGGCCTGCTTCAC 118 Query 53940 CCAATTGCGCAACGCCTCGGGATGGACTCCGAGCTGATCGGCGATCCGCTTGATCGCACC 53999 ||| | |||||| ||||||| || || ||||||||||| |||| ||||| | |||||| Sbjct 117 CCAGGTCCGCAACACCTCGGGGTGCACCCCGAGCTGATCACCGATGCGCTTAAACGCACC 58 >seq5769 Length=288 Score = 98.7 bits (108), Expect = 3e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 53827 ATCGTGTTCGCTCGCCGCAGTTCACGGTTCTCCCGCTCCAACGCCGCGATGCGGTCAGCG 53886 |||| |||||| |||||||| || ||| |||| ||||| || |||| || | ||| Sbjct 1 ATCGCGTTCGCCCGCCGCAGCTCGCGGACCTCCTTCTCCAGTTCCACGATCCGCGCCGCG 60 Query 53887 TCCTCACTCGTGGTGCCCGGGCGGACCCCGCCGTCGATCTCGGCCTGACGAACCCAATTG 53946 ||| | |||||||||||||||| | || | ||| |||||||||| ||||| | Sbjct 61 TCCACCGTCGTGGTGCCCGGGCGCAGGCCCTCATCGGTCTCGGCCTGCTTCACCCAGGTC 120 Query 53947 CGCAACGCCTCGGGATGGACTCCGAGCTGATCGGCGATCCGCTT 53990 |||| || ||||| || || ||||| || || |||| ||||| Sbjct 121 CGCAGGGCTTCGGGGTGCACCCCGAGTTGGTCACCGATGCGCTT 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175814285941296