Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_031029.1 Length=93686 Score E Sequences producing significant alignments: (Bits) Value seq14069 396 2e-105 seq12754 181 6e-41 seq3711 138 7e-28 seq4161 122 5e-23 seq5769 98.7 6e-16 >seq14069 Length=58536 Score = 396 bits (438), Expect = 2e-105 Identities = 458/609 (75%), Gaps = 15/609 (2%) Strand=Plus/Minus Query 7212 CGGCACCGAACGCGTTGTGGGTGGCGGACCTGACCTACATCCGCACCCACTCGGGCTGGG 7271 ||||||||||| | | ||||| || || ||||||||||||||||||||| | ||||||| Sbjct 54813 CGGCACCGAACCAGCTCTGGGTCGCCGATCTGACCTACATCCGCACCCACGCCGGCTGGG 54754 Query 7272 TGTACGCGGCGTTCGTCCTGGACGTGTTCTCGCGGATGGTCGTCGGCTGGCAGGTCTCGA 7331 | ||||| ||||||||| ||||||||| || | || |||||||||||||||| | Sbjct 54753 TCTACGCCGCGTTCGTCACCGACGTGTTCAGTCGCCTCGTGATCGGCTGGCAGGTCTCCA 54694 Query 7332 CCACCATGCACACCGACCTCGCCCTCGACGCCCTGAACATGGGATTGTGGGCACGGTCGC 7391 || | | |||| |||||| |||||||||| || ||||||| | ||| ||| | Sbjct 54693 CCCACCTCTACACGGACCTCTCCCTCGACGCGCTCGACATGGGCCTCTGGCAACGCCACC 54634 Query 7392 GTGCCGGCCACGACGTGGCCGGGCTGATCCACCACTCCGACCGCGGAGTGCAATACCGAG 7451 | |||| || ||||| |||| || ||||||||| |||||||||||| || || |||| Sbjct 54633 GCACCGGGCAAGACGTCACCGGCCTCATCCACCACAGCGACCGCGGAGTCCAGTATCGAG 54574 Query 7452 CCATCCGCTACACCGAACGACTGGC--CGAAGCCGAAGCGGTGACATCTGTTGGCTCCAA 7509 | |||||||||||||| || || || ||| || || || || | || || || ||||| Sbjct 54573 CGATCCGCTACACCGAGCGCCTCGCCGCGAGGCTGAGGCCGTCGCCTCCGTCGGATCCAA 54514 Query 7510 AGGGGATTCATACGACAACGCGATGGCTGAGGCGTTCAACTCGCTGTTCAAAGCCGAATG 7569 || ||||| || | |||| | || |||||||||||||| || ||||| | ||| || Sbjct 54513 GGGCGATTCGTATG---ACGCCCTCGCCGAGGCGTTCAACTCCCTCTTCAAGGTCGAGTG 54457 Query 7570 CATCCGTAACCCCGTGATGCGCCCGCGAGGCGGCTGGGCAGGTGTGGGCGAGGTCGAGAT 7629 |||||| ||||| | |||||||| ||||||||||| | | |||| |||||||| Sbjct 54456 CATCCGCAACCCGGCCATGCGCCCCAAGGGCGGCTGGGCGTCTATCCGCGACGTCGAGAT 54397 Query 7630 CGCCGTCGCTGAGTACGTCGAATGGTTCAACCACCGCCGCCTGCACGGCGAGATCGGACA 7689 ||||||||| || || |||| |||||||||||||| ||||| |||||||||||||| Sbjct 54396 CGCCGTCGCCGAAAACATCGACTGGTTCAACCACCGGCGCCTCCACGGCGAGATCGGTAT 54337 Query 7690 CGTCCCACCCGTCGAGTACGAGAGCGCCTACTGGTCGACCCACACCGTCACCAG-CTACC 7748 ||||||||| ||| || |||||| || | |||| || || | |||| Sbjct 54336 GCTCCCACCCGCCGA-----AG-CCGCCTATTGCGCATCCCA-GCCATCGGTTGATTACC 54284 Query 7749 GT-GAGAACCCGGTCCCCGCAAACGCTGGAACCAACTAACCGAGCCTCCAGCAAACCCGG 7807 | ||||| | ||||||| | || | ||||||| ||||||||||||| |||||| | Sbjct 54283 CTCAAGAACAC-GTCCCCGTCGAGGCCGAAACCAACCAACCGAGCCTCCACAAAACCCAG 54225 Query 7808 GGCGATTCA 7816 ||||||||| Sbjct 54224 GGCGATTCA 54216 Score = 109 bits (120), Expect = 3e-19 Identities = 129/171 (75%), Gaps = 14/171 (8%) Strand=Plus/Minus Query 6453 GAACCGCCCCGGGTCTGTCGGAGGCTCTCGAACCTGTGAAGGATGGAGAG-CATGGCAGC 6511 ||| || ||||||| || |||||||||| |||||||||||||| ||||| ||||||||| Sbjct 55192 GAAGCGTCCCGGGTGTGATGGAGGCTCTCAAACCTGTGAAGGAT-GAGAGTCATGGCAGC 55134 Query 6512 ACCACGCAAGTACAGTGAGGAACTCAAGGACCGGGCCACCCGGATGGCATGTGAAGCGCG 6571 | | | ||| |||| |||||| | ||||| ||||| || ||| |||| | || ||| | Sbjct 55133 ATCGAGGAAGGACAGCGAGGAATTGAAGGAGCGGGCGACGCGGTTGGCGTTGGAGGCGTG 55074 Query 6572 ACGAGATCCCGATTCGTCGAG--AGGT----GCGATCAAGCGGATCGCCGA 6616 || || | || |||| |||| ||||||||||||||||| || Sbjct 55073 TCGTGACC------CGGCGAGCAAGGTGGGGGCGATCAAGCGGATCGCGGA 55029 >seq12754 Length=666 Score = 181 bits (200), Expect = 6e-41 Identities = 202/270 (75%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 7194 ACCGTCAGTTCACCGCGGCGGCACCGAACGCGTTGTGGGTGGCGGACCTGACCTACATCC 7253 |||| |||||| ||| | |||||||||| | | ||||| || || | |||||| | | Sbjct 270 ACCGGCAGTTCCACGCCGAGGCACCGAACCGGCTCTGGGTCGCCGATATCACCTACGTGC 211 Query 7254 GCACCCACTCGGGCTGGGTGTACGCGGCGTTCGTCCTGGACGTGTTCTCGCGGATGGTCG 7313 ||||| | | |||||||| |||||||||||||| || ||||||| ||| || ||| ||| Sbjct 210 GCACCTTCGCCGGCTGGGTCTACGCGGCGTTCGTACTCGACGTGTACTCCCGCATGATCG 151 Query 7314 TCGGCTGGCAGGTCTCGACCACCATGCACACCGACCTCGCCCTCGACGCCCTGAACATGG 7373 ||||||||||||||| || | || | ||||| ||||| || || || ||| | || Sbjct 150 CCGGCTGGCAGGTCTCCACGTCGCTGTATACCGATCTCGCGCTGGATGCGTTGACGACGG 91 Query 7374 GATTGTGGGCACGGTCGCGTGCCGGCCACGACGTGGCCGGGCTGATCCACCACTCCGACC 7433 | | ||| ||| || | ||| |||| || || | || ||||||||| ||||| Sbjct 90 GCATCTGGCGACGCGAACGCGAAGGCGCCGACCTGACCAGACTCATCCACCACAGCGACC 31 Query 7434 GCGGAGTGCAATACCGAGCCATCCGCTACA 7463 | ||||| ||||||||| |||||||||||| Sbjct 30 GAGGAGTCCAATACCGATCCATCCGCTACA 1 >seq3711 Length=236 Score = 138 bits (152), Expect = 7e-28 Identities = 126/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 7174 CCGGCCGGCTGACCGGGTCAACCGTCAGTTCACCGCGGCGGCACCGAACGCGTTGTGGGT 7233 ||||||| |||| ||| ||||| |||||| |||| | ||||||| ||||||||| Sbjct 64 CCGGCCGCTGGACCTGGTGAACCGGCAGTTCGTCGCGTCCCGCCCGAACGAGTTGTGGGT 123 Query 7234 GGCGGACCTGACCTACATCCGCACCCACTCGGGCTGGGTGTACGCGGCGTTCGTCCTGGA 7293 |||||| | |||||| | ||||| |||||| |||||||||| ||||||||| || Sbjct 124 CGCGGACATCACCTACGTGCGCACGTTCTCGGGGTGGGTGTACGTCGCGTTCGTCACCGA 183 Query 7294 CGTGTTCTCGCGGATGGTCGTCGGCTGGCAGGTCTCGAC 7332 ||||| ||| || ||| ||||||||||||||||||| || Sbjct 184 CGTGTACTCTCGCATGATCGTCGGCTGGCAGGTCTCCAC 222 >seq4161 Length=244 Score = 122 bits (134), Expect = 5e-23 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 6594 GGTGCGATCAAGCGGATCGCCGATCAGCTCGGAGTCCATCCCGAGGCGTTGCGCAATTGG 6653 |||||| | ||||| |||| ||||||||||| || || ||||||| |||||| | ||| Sbjct 58 GGTGCGTTTAAGCGCATCGGTGATCAGCTCGGGGTGCACCCCGAGGTGTTGCGGACCTGG 117 Query 6654 GTTCGTCAGGCCGAGATCGACGGCGGGGTCCGCCCGGGCACCACGAGTGAGGACGCTGAC 6713 || |||||||||| || || || | |||||||||||||||| | |||||| | Sbjct 118 GTGAAGCAGGCCGAGACCGGCGAGGGCCTGCGCCCGGGCACCACGACGGTGGACGCGGCG 177 Query 6714 CGCATCGCGGCGTTGGAGCGGGAGAACCGTGAACTGCGGCGAGCGAACACGATCTTGAAG 6773 || |||| || | ||| | |||| ||| || |||||||| |||| ||||| ||||| Sbjct 178 CGGATCGTGGAGCTGGGGAAGGAGGTCCGCGAGCTGCGGCGGGCGAGGGCGATCCTGAAG 237 >seq5769 Length=288 Score = 98.7 bits (108), Expect = 6e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 6603 AAGCGGATCGCCGATCAGCTCGGAGTCCATCCCGAGGCGTTGCGCAATTGGGTTCGTCAG 6662 ||||| |||| || || ||||| || || ||||| || |||| | ||||| ||| Sbjct 164 AAGCGCATCGGTGACCAACTCGGGGTGCACCCCGAAGCCCTGCGGACCTGGGTGAAGCAG 105 Query 6663 GCCGAGATCGACGGCGGGGTCCGCCCGGGCACCACGAGTGAGGACGCTGACCGCATCGCG 6722 ||||||| ||| | || | |||||||||||||||| | |||||| | || |||| | Sbjct 104 GCCGAGACCGATGAGGGCCTGCGCCCGGGCACCACGACGGTGGACGCGGCGCGGATCGTG 45 Query 6723 GCGTTGGAGCGGGAGAACCGTGAACTGCGGCGAGCGAACACGAT 6766 | ||||| |||| ||| || |||||||| |||||| |||| Sbjct 44 GAACTGGAGAAGGAGGTCCGCGAGCTGCGGCGGGCGAACGCGAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299614232308693