Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_031029.1
Length=93686
Score E
Sequences producing significant alignments: (Bits) Value
seq14069 396 2e-105
seq12754 181 6e-41
seq3711 138 7e-28
seq4161 122 5e-23
seq5769 98.7 6e-16
>seq14069
Length=58536
Score = 396 bits (438), Expect = 2e-105
Identities = 458/609 (75%), Gaps = 15/609 (2%)
Strand=Plus/Minus
Query 7212 CGGCACCGAACGCGTTGTGGGTGGCGGACCTGACCTACATCCGCACCCACTCGGGCTGGG 7271
||||||||||| | | ||||| || || ||||||||||||||||||||| | |||||||
Sbjct 54813 CGGCACCGAACCAGCTCTGGGTCGCCGATCTGACCTACATCCGCACCCACGCCGGCTGGG 54754
Query 7272 TGTACGCGGCGTTCGTCCTGGACGTGTTCTCGCGGATGGTCGTCGGCTGGCAGGTCTCGA 7331
| ||||| ||||||||| ||||||||| || | || |||||||||||||||| |
Sbjct 54753 TCTACGCCGCGTTCGTCACCGACGTGTTCAGTCGCCTCGTGATCGGCTGGCAGGTCTCCA 54694
Query 7332 CCACCATGCACACCGACCTCGCCCTCGACGCCCTGAACATGGGATTGTGGGCACGGTCGC 7391
|| | | |||| |||||| |||||||||| || ||||||| | ||| ||| |
Sbjct 54693 CCCACCTCTACACGGACCTCTCCCTCGACGCGCTCGACATGGGCCTCTGGCAACGCCACC 54634
Query 7392 GTGCCGGCCACGACGTGGCCGGGCTGATCCACCACTCCGACCGCGGAGTGCAATACCGAG 7451
| |||| || ||||| |||| || ||||||||| |||||||||||| || || ||||
Sbjct 54633 GCACCGGGCAAGACGTCACCGGCCTCATCCACCACAGCGACCGCGGAGTCCAGTATCGAG 54574
Query 7452 CCATCCGCTACACCGAACGACTGGC--CGAAGCCGAAGCGGTGACATCTGTTGGCTCCAA 7509
| |||||||||||||| || || || ||| || || || || | || || || |||||
Sbjct 54573 CGATCCGCTACACCGAGCGCCTCGCCGCGAGGCTGAGGCCGTCGCCTCCGTCGGATCCAA 54514
Query 7510 AGGGGATTCATACGACAACGCGATGGCTGAGGCGTTCAACTCGCTGTTCAAAGCCGAATG 7569
|| ||||| || | |||| | || |||||||||||||| || ||||| | ||| ||
Sbjct 54513 GGGCGATTCGTATG---ACGCCCTCGCCGAGGCGTTCAACTCCCTCTTCAAGGTCGAGTG 54457
Query 7570 CATCCGTAACCCCGTGATGCGCCCGCGAGGCGGCTGGGCAGGTGTGGGCGAGGTCGAGAT 7629
|||||| ||||| | |||||||| ||||||||||| | | |||| ||||||||
Sbjct 54456 CATCCGCAACCCGGCCATGCGCCCCAAGGGCGGCTGGGCGTCTATCCGCGACGTCGAGAT 54397
Query 7630 CGCCGTCGCTGAGTACGTCGAATGGTTCAACCACCGCCGCCTGCACGGCGAGATCGGACA 7689
||||||||| || || |||| |||||||||||||| ||||| ||||||||||||||
Sbjct 54396 CGCCGTCGCCGAAAACATCGACTGGTTCAACCACCGGCGCCTCCACGGCGAGATCGGTAT 54337
Query 7690 CGTCCCACCCGTCGAGTACGAGAGCGCCTACTGGTCGACCCACACCGTCACCAG-CTACC 7748
||||||||| ||| || |||||| || | |||| || || | ||||
Sbjct 54336 GCTCCCACCCGCCGA-----AG-CCGCCTATTGCGCATCCCA-GCCATCGGTTGATTACC 54284
Query 7749 GT-GAGAACCCGGTCCCCGCAAACGCTGGAACCAACTAACCGAGCCTCCAGCAAACCCGG 7807
| ||||| | ||||||| | || | ||||||| ||||||||||||| |||||| |
Sbjct 54283 CTCAAGAACAC-GTCCCCGTCGAGGCCGAAACCAACCAACCGAGCCTCCACAAAACCCAG 54225
Query 7808 GGCGATTCA 7816
|||||||||
Sbjct 54224 GGCGATTCA 54216
Score = 109 bits (120), Expect = 3e-19
Identities = 129/171 (75%), Gaps = 14/171 (8%)
Strand=Plus/Minus
Query 6453 GAACCGCCCCGGGTCTGTCGGAGGCTCTCGAACCTGTGAAGGATGGAGAG-CATGGCAGC 6511
||| || ||||||| || |||||||||| |||||||||||||| ||||| |||||||||
Sbjct 55192 GAAGCGTCCCGGGTGTGATGGAGGCTCTCAAACCTGTGAAGGAT-GAGAGTCATGGCAGC 55134
Query 6512 ACCACGCAAGTACAGTGAGGAACTCAAGGACCGGGCCACCCGGATGGCATGTGAAGCGCG 6571
| | | ||| |||| |||||| | ||||| ||||| || ||| |||| | || ||| |
Sbjct 55133 ATCGAGGAAGGACAGCGAGGAATTGAAGGAGCGGGCGACGCGGTTGGCGTTGGAGGCGTG 55074
Query 6572 ACGAGATCCCGATTCGTCGAG--AGGT----GCGATCAAGCGGATCGCCGA 6616
|| || | || |||| |||| ||||||||||||||||| ||
Sbjct 55073 TCGTGACC------CGGCGAGCAAGGTGGGGGCGATCAAGCGGATCGCGGA 55029
>seq12754
Length=666
Score = 181 bits (200), Expect = 6e-41
Identities = 202/270 (75%), Gaps = 0/270 (0%)
Strand=Plus/Minus
Query 7194 ACCGTCAGTTCACCGCGGCGGCACCGAACGCGTTGTGGGTGGCGGACCTGACCTACATCC 7253
|||| |||||| ||| | |||||||||| | | ||||| || || | |||||| | |
Sbjct 270 ACCGGCAGTTCCACGCCGAGGCACCGAACCGGCTCTGGGTCGCCGATATCACCTACGTGC 211
Query 7254 GCACCCACTCGGGCTGGGTGTACGCGGCGTTCGTCCTGGACGTGTTCTCGCGGATGGTCG 7313
||||| | | |||||||| |||||||||||||| || ||||||| ||| || ||| |||
Sbjct 210 GCACCTTCGCCGGCTGGGTCTACGCGGCGTTCGTACTCGACGTGTACTCCCGCATGATCG 151
Query 7314 TCGGCTGGCAGGTCTCGACCACCATGCACACCGACCTCGCCCTCGACGCCCTGAACATGG 7373
||||||||||||||| || | || | ||||| ||||| || || || ||| | ||
Sbjct 150 CCGGCTGGCAGGTCTCCACGTCGCTGTATACCGATCTCGCGCTGGATGCGTTGACGACGG 91
Query 7374 GATTGTGGGCACGGTCGCGTGCCGGCCACGACGTGGCCGGGCTGATCCACCACTCCGACC 7433
| | ||| ||| || | ||| |||| || || | || ||||||||| |||||
Sbjct 90 GCATCTGGCGACGCGAACGCGAAGGCGCCGACCTGACCAGACTCATCCACCACAGCGACC 31
Query 7434 GCGGAGTGCAATACCGAGCCATCCGCTACA 7463
| ||||| ||||||||| ||||||||||||
Sbjct 30 GAGGAGTCCAATACCGATCCATCCGCTACA 1
>seq3711
Length=236
Score = 138 bits (152), Expect = 7e-28
Identities = 126/159 (79%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 7174 CCGGCCGGCTGACCGGGTCAACCGTCAGTTCACCGCGGCGGCACCGAACGCGTTGTGGGT 7233
||||||| |||| ||| ||||| |||||| |||| | ||||||| |||||||||
Sbjct 64 CCGGCCGCTGGACCTGGTGAACCGGCAGTTCGTCGCGTCCCGCCCGAACGAGTTGTGGGT 123
Query 7234 GGCGGACCTGACCTACATCCGCACCCACTCGGGCTGGGTGTACGCGGCGTTCGTCCTGGA 7293
|||||| | |||||| | ||||| |||||| |||||||||| ||||||||| ||
Sbjct 124 CGCGGACATCACCTACGTGCGCACGTTCTCGGGGTGGGTGTACGTCGCGTTCGTCACCGA 183
Query 7294 CGTGTTCTCGCGGATGGTCGTCGGCTGGCAGGTCTCGAC 7332
||||| ||| || ||| ||||||||||||||||||| ||
Sbjct 184 CGTGTACTCTCGCATGATCGTCGGCTGGCAGGTCTCCAC 222
>seq4161
Length=244
Score = 122 bits (134), Expect = 5e-23
Identities = 135/180 (75%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 6594 GGTGCGATCAAGCGGATCGCCGATCAGCTCGGAGTCCATCCCGAGGCGTTGCGCAATTGG 6653
|||||| | ||||| |||| ||||||||||| || || ||||||| |||||| | |||
Sbjct 58 GGTGCGTTTAAGCGCATCGGTGATCAGCTCGGGGTGCACCCCGAGGTGTTGCGGACCTGG 117
Query 6654 GTTCGTCAGGCCGAGATCGACGGCGGGGTCCGCCCGGGCACCACGAGTGAGGACGCTGAC 6713
|| |||||||||| || || || | |||||||||||||||| | |||||| |
Sbjct 118 GTGAAGCAGGCCGAGACCGGCGAGGGCCTGCGCCCGGGCACCACGACGGTGGACGCGGCG 177
Query 6714 CGCATCGCGGCGTTGGAGCGGGAGAACCGTGAACTGCGGCGAGCGAACACGATCTTGAAG 6773
|| |||| || | ||| | |||| ||| || |||||||| |||| ||||| |||||
Sbjct 178 CGGATCGTGGAGCTGGGGAAGGAGGTCCGCGAGCTGCGGCGGGCGAGGGCGATCCTGAAG 237
>seq5769
Length=288
Score = 98.7 bits (108), Expect = 6e-16
Identities = 120/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 6603 AAGCGGATCGCCGATCAGCTCGGAGTCCATCCCGAGGCGTTGCGCAATTGGGTTCGTCAG 6662
||||| |||| || || ||||| || || ||||| || |||| | ||||| |||
Sbjct 164 AAGCGCATCGGTGACCAACTCGGGGTGCACCCCGAAGCCCTGCGGACCTGGGTGAAGCAG 105
Query 6663 GCCGAGATCGACGGCGGGGTCCGCCCGGGCACCACGAGTGAGGACGCTGACCGCATCGCG 6722
||||||| ||| | || | |||||||||||||||| | |||||| | || |||| |
Sbjct 104 GCCGAGACCGATGAGGGCCTGCGCCCGGGCACCACGACGGTGGACGCGGCGCGGATCGTG 45
Query 6723 GCGTTGGAGCGGGAGAACCGTGAACTGCGGCGAGCGAACACGAT 6766
| ||||| |||| ||| || |||||||| |||||| ||||
Sbjct 44 GAACTGGAGAAGGAGGTCCGCGAGCTGCGGCGGGCGAACGCGAT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 299614232308693
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |