Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq10371 134 2e-26
seq9873 89.7 7e-13
>seq10371
Length=124667
Score = 134 bits (148), Expect = 2e-26
Identities = 192/268 (72%), Gaps = 2/268 (1%)
Strand=Plus/Plus
Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437
|| ||||| || || | | ||| | |||||||||| || || || ||||| |||||
Sbjct 64616 CTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGCGTTGGTGAAGCATGTGTAAAA 64675
Query 78438 CATTTTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAAT 78496
|| ||| || || || ||| |||||||| || || || ||||| | ||||||
Sbjct 64676 TATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTTCCATGAAT 64734
Query 78497 TCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTT 78556
|| || ||||| | |||||||||||||||||| ||||| || ||||| || |||||
Sbjct 64735 ACCAACAGCTACTCTCATCAACATATGCTGAGGCCTTTCGACTATCTTAGAGTTGATTTT 64794
Query 78557 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTC 78616
|| |||||| | | || | ||||||||||||| ||| || || ||||||| ||
Sbjct 64795 CAGCAAGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGTCTCGATC 64854
Query 78617 GTAAATAATAACAGAATTTAGTTTATCT 78644
||| || || |||| | ||||| |||
Sbjct 64855 GTATATTATGGCAGAGTCCAGTTTCTCT 64882
Score = 129 bits (142), Expect = 8e-25
Identities = 221/317 (70%), Gaps = 8/317 (3%)
Strand=Plus/Plus
Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583
||||||||||||| ||||| ||| || |||| | |||| ||||||||| | ||||
Sbjct 63138 TACCAATAGGTCTGTGTCTACGATTAGATGTTTTCGTTTCTTCGATAGGATAAAAGTTAA 63197
Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643
||| || | ||||| ||||| | | ||| | ||| | || || |||||| ||
Sbjct 63198 CGTCGATGACTTTATCTAGATTACGAGTAACGATTTTCGCGACTGTTTTAAGTTTATCAA 63257
Query 77644 AATCAAA-----TCTTCCATCTAT-AACAAACATGTTCAAAGCTATAGATGCTAGATTAC 77697
|||| || || | | ||| |||||||||||| | ||| |||||||||| |||||
Sbjct 63258 AATCGAAAGTTTTCGTGTCTGTATTAACAAACATGTTGACAGCGATAGATGCTAAATTAC 63317
Query 77698 AAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATT 77757
| || || || || || || |||| | || ||||| || | || || ||||
Sbjct 63318 ACACAGCGACTTCTCCAGGACCGGAGTATTCAACAATTTCGGTGCACAAGTTGCTGCATT 63377
Query 77758 TGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAGTCCTTATAAAGAATA 77816
|||||||||| | || || || || ||| ||||| |||| || |||||||| |||
Sbjct 63378 TGATAGTGCCTATATGCTGATGATTCGATTTTCGATTGCAATGA-TCTTTATAAAGCATA 63436
Query 77817 AACGGAGTCCCGGTTTC 77833
| || || ||||||||
Sbjct 63437 TAAGGTGTTCCGGTTTC 63453
Score = 122 bits (134), Expect = 1e-22
Identities = 196/280 (70%), Gaps = 4/280 (1%)
Strand=Plus/Plus
Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120
|||| ||||| || | ||| || || || | |||||| ||| || ||||| |||||
Sbjct 62529 TTCTGCATATCTTCGTCCCATAAATTTCTAGCGGTTAAATCTCGCAGTAGATGTGGATTG 62588
Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180
|| || |||||||||||||||||| | | || ||||| || |||||||||||
Sbjct 62589 ACAATGACAAATTCTCCAGACAATACGCGCCTCACATAGATATTGCTTGTATATGGTTCA 62648
Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240
| ||||| || || || ||||| || || || || || |||||||||||||| | ||
Sbjct 62649 ATGGATTCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAA 62708
Query 77241 AAACTATTTCTGAGACCATGTGTTC--TGATTTTATCTTTTAGATATTTCCAATCCCAAA 77298
| |||||| | ||| |||||| ||| || |||| | | ||||||||| |
Sbjct 62709 AGGGAATTTCTTATACC--GTGTTCCGCGATCTTCGCTTTCAATTCACACCAATCCCATA 62766
Query 77299 GATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338
||||| || ||| | ||| | ||| ||||| || ||
Sbjct 62767 AATCTGTTGGCTTAACGTTCCACATATCATATTGGAGGAT 62806
Score = 96.9 bits (106), Expect = 5e-15
Identities = 119/157 (76%), Gaps = 8/157 (5%)
Strand=Plus/Plus
Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983
|| ||||||||| |||||||||||| | || | ||| |||||| ||| ||||| ||
Sbjct 63643 TTTAAATTCATCGCCCCAAACATCAGCTAAGCGAGGAGATTCATATGGACACATTAAGCT 63702
Query 77984 CCAGTCACCATCTTCCTTA---ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 78040
||| || | || || ||| || |||| |||||| ||||| |||||||||||||||
Sbjct 63703 CCA--CATC-TCGTCATTATACACACGTTCCATAAAAAGATCTGGTATCCATAGAGCATA 63759
Query 78041 AAATAGATCTCGGGTTC-TATGTTCTTCATTTCCTGT 78076
||||| ||||| || || ||||| | ||| |||||
Sbjct 63760 AAATAAATCTCTGGCTCGCATGTT-TCCATCACCTGT 63795
Score = 91.5 bits (100), Expect = 2e-13
Identities = 119/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 77363 ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422
||| ||||| |||| |||| | |||| | ||||||||| ||||| || || || ||
Sbjct 62902 ATACGTTTCGTAAGTGCCTTTTTCCGCAGCCAATTCACAACTGGCTTCTAAGGCACCATA 62961
Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482
||||| ||||||||||| || | || || |||| || || | || || || |||||
Sbjct 62962 ATAAAGCGTTTCGAAAATTTTAATGTTAAGTTCTTTCGCCTCTTTGCTCTCGAAGGGATA 63021
Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACC 77527
| | || | || ||||||||||| || || | |||||||||
Sbjct 63022 TCGCATTAGTAGGAACGCATCTGCTAAACCTTGTATTCCAATACC 63066
>seq9873
Length=3435365
Score = 89.7 bits (98), Expect = 7e-13
Identities = 171/249 (69%), Gaps = 15/249 (6%)
Strand=Plus/Minus
Query 47915 AAAATCAAATGGATTAACTGCATTATAAAtt---tttttAAATCCTAATTCTGAAATCAG 47971
|||||||||| || ||| ||||| ||| |||| |||||||||| | | ||
Sbjct 2563461 AAAATCAAATCGA---ACT---TTATATATTACCTTTTCAAATCCTAATGCAACGAACAA 2563408
Query 47972 TCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTT 48031
||| || || || ||||| || || | ||| | | |||||||| ||||| | ||
Sbjct 2563407 TCTGTCCGCGACAAATTCGATGTAATTACACATAAGTGTGCAATTCATACCTATTAATTC 2563348
Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGA 48091
|| |||| |||| || | ||| |||| ||| || || ||||||| ||| |||||
Sbjct 2563347 GACAGGTAATGCCTGTGTTAAAAATTCTTTTTCAATTTCCACGGCATCCATTATAATCGA 2563288
Query 48092 TGTTACCGTTTCCTCACTTGGTGGATAC---AACAAATGTTTAAACATTAAACATGCAAA 48148
| | || | |||| || ||| | | | |||||||||||||||||| || ||
Sbjct 2563287 TTTCACA---TGCTCAAATGATGGCTTTTGTATGATATGTTTAAACATTAAACAGGCGAA 2563231
Query 48149 ATCACAATG 48157
|||||||||
Sbjct 2563230 ATCACAATG 2563222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694535258606560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |