Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq10371 134 2e-26 seq9873 89.7 7e-13 >seq10371 Length=124667 Score = 134 bits (148), Expect = 2e-26 Identities = 192/268 (72%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 || ||||| || || | | ||| | |||||||||| || || || ||||| ||||| Sbjct 64616 CTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGCGTTGGTGAAGCATGTGTAAAA 64675 Query 78438 CATTTTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAAT 78496 || ||| || || || ||| |||||||| || || || ||||| | |||||| Sbjct 64676 TATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTTCCATGAAT 64734 Query 78497 TCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTT 78556 || || ||||| | |||||||||||||||||| ||||| || ||||| || ||||| Sbjct 64735 ACCAACAGCTACTCTCATCAACATATGCTGAGGCCTTTCGACTATCTTAGAGTTGATTTT 64794 Query 78557 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTC 78616 || |||||| | | || | ||||||||||||| ||| || || ||||||| || Sbjct 64795 CAGCAAGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGTCTCGATC 64854 Query 78617 GTAAATAATAACAGAATTTAGTTTATCT 78644 ||| || || |||| | ||||| ||| Sbjct 64855 GTATATTATGGCAGAGTCCAGTTTCTCT 64882 Score = 129 bits (142), Expect = 8e-25 Identities = 221/317 (70%), Gaps = 8/317 (3%) Strand=Plus/Plus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 ||||||||||||| ||||| ||| || |||| | |||| ||||||||| | |||| Sbjct 63138 TACCAATAGGTCTGTGTCTACGATTAGATGTTTTCGTTTCTTCGATAGGATAAAAGTTAA 63197 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 ||| || | ||||| ||||| | | ||| | ||| | || || |||||| || Sbjct 63198 CGTCGATGACTTTATCTAGATTACGAGTAACGATTTTCGCGACTGTTTTAAGTTTATCAA 63257 Query 77644 AATCAAA-----TCTTCCATCTAT-AACAAACATGTTCAAAGCTATAGATGCTAGATTAC 77697 |||| || || | | ||| |||||||||||| | ||| |||||||||| ||||| Sbjct 63258 AATCGAAAGTTTTCGTGTCTGTATTAACAAACATGTTGACAGCGATAGATGCTAAATTAC 63317 Query 77698 AAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATT 77757 | || || || || || || |||| | || ||||| || | || || |||| Sbjct 63318 ACACAGCGACTTCTCCAGGACCGGAGTATTCAACAATTTCGGTGCACAAGTTGCTGCATT 63377 Query 77758 TGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAGTCCTTATAAAGAATA 77816 |||||||||| | || || || || ||| ||||| |||| || |||||||| ||| Sbjct 63378 TGATAGTGCCTATATGCTGATGATTCGATTTTCGATTGCAATGA-TCTTTATAAAGCATA 63436 Query 77817 AACGGAGTCCCGGTTTC 77833 | || || |||||||| Sbjct 63437 TAAGGTGTTCCGGTTTC 63453 Score = 122 bits (134), Expect = 1e-22 Identities = 196/280 (70%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 |||| ||||| || | ||| || || || | |||||| ||| || ||||| ||||| Sbjct 62529 TTCTGCATATCTTCGTCCCATAAATTTCTAGCGGTTAAATCTCGCAGTAGATGTGGATTG 62588 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || |||||||||||||||||| | | || ||||| || ||||||||||| Sbjct 62589 ACAATGACAAATTCTCCAGACAATACGCGCCTCACATAGATATTGCTTGTATATGGTTCA 62648 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | ||||| || || || ||||| || || || || || |||||||||||||| | || Sbjct 62649 ATGGATTCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAA 62708 Query 77241 AAACTATTTCTGAGACCATGTGTTC--TGATTTTATCTTTTAGATATTTCCAATCCCAAA 77298 | |||||| | ||| |||||| ||| || |||| | | ||||||||| | Sbjct 62709 AGGGAATTTCTTATACC--GTGTTCCGCGATCTTCGCTTTCAATTCACACCAATCCCATA 62766 Query 77299 GATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 ||||| || ||| | ||| | ||| ||||| || || Sbjct 62767 AATCTGTTGGCTTAACGTTCCACATATCATATTGGAGGAT 62806 Score = 96.9 bits (106), Expect = 5e-15 Identities = 119/157 (76%), Gaps = 8/157 (5%) Strand=Plus/Plus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 || ||||||||| |||||||||||| | || | ||| |||||| ||| ||||| || Sbjct 63643 TTTAAATTCATCGCCCCAAACATCAGCTAAGCGAGGAGATTCATATGGACACATTAAGCT 63702 Query 77984 CCAGTCACCATCTTCCTTA---ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 78040 ||| || | || || ||| || |||| |||||| ||||| ||||||||||||||| Sbjct 63703 CCA--CATC-TCGTCATTATACACACGTTCCATAAAAAGATCTGGTATCCATAGAGCATA 63759 Query 78041 AAATAGATCTCGGGTTC-TATGTTCTTCATTTCCTGT 78076 ||||| ||||| || || ||||| | ||| ||||| Sbjct 63760 AAATAAATCTCTGGCTCGCATGTT-TCCATCACCTGT 63795 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 77363 ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422 ||| ||||| |||| |||| | |||| | ||||||||| ||||| || || || || Sbjct 62902 ATACGTTTCGTAAGTGCCTTTTTCCGCAGCCAATTCACAACTGGCTTCTAAGGCACCATA 62961 Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482 ||||| ||||||||||| || | || || |||| || || | || || || ||||| Sbjct 62962 ATAAAGCGTTTCGAAAATTTTAATGTTAAGTTCTTTCGCCTCTTTGCTCTCGAAGGGATA 63021 Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACC 77527 | | || | || ||||||||||| || || | ||||||||| Sbjct 63022 TCGCATTAGTAGGAACGCATCTGCTAAACCTTGTATTCCAATACC 63066 >seq9873 Length=3435365 Score = 89.7 bits (98), Expect = 7e-13 Identities = 171/249 (69%), Gaps = 15/249 (6%) Strand=Plus/Minus Query 47915 AAAATCAAATGGATTAACTGCATTATAAAtt---tttttAAATCCTAATTCTGAAATCAG 47971 |||||||||| || ||| ||||| ||| |||| |||||||||| | | || Sbjct 2563461 AAAATCAAATCGA---ACT---TTATATATTACCTTTTCAAATCCTAATGCAACGAACAA 2563408 Query 47972 TCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTT 48031 ||| || || || ||||| || || | ||| | | |||||||| ||||| | || Sbjct 2563407 TCTGTCCGCGACAAATTCGATGTAATTACACATAAGTGTGCAATTCATACCTATTAATTC 2563348 Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGA 48091 || |||| |||| || | ||| |||| ||| || || ||||||| ||| ||||| Sbjct 2563347 GACAGGTAATGCCTGTGTTAAAAATTCTTTTTCAATTTCCACGGCATCCATTATAATCGA 2563288 Query 48092 TGTTACCGTTTCCTCACTTGGTGGATAC---AACAAATGTTTAAACATTAAACATGCAAA 48148 | | || | |||| || ||| | | | |||||||||||||||||| || || Sbjct 2563287 TTTCACA---TGCTCAAATGATGGCTTTTGTATGATATGTTTAAACATTAAACAGGCGAA 2563231 Query 48149 ATCACAATG 48157 ||||||||| Sbjct 2563230 ATCACAATG 2563222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694535258606560