Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq10371 131 2e-25 seq9873 100 4e-16 >seq10371 Length=124667 Score = 131 bits (144), Expect = 2e-25 Identities = 198/280 (71%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 |||| || || || | ||| || ||||| |||||||| ||| || ||||| ||||| Sbjct 62529 TTCTGCATATCTTCGTCCCATAAATTTCTAGCGGTTAAATCTCGCAGTAGATGTGGATTG 62588 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 ||||| |||||||||||||||||| | | || ||||| || ||||||||||| Sbjct 62589 ACAATGACAAATTCTCCAGACAATACGCGCCTCACATAGATATTGCTTGTATATGGTTCA 62648 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | ||||| || || || ||||| || || || || || || ||||||||||| | || Sbjct 62649 ATGGATTCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAA 62708 Query 75836 AAACTATTTCTGAGACCATGTGTTC--TGATTTTATCTTTTAGATATTTCCAATCCCAAA 75893 | |||||| | ||| |||||| ||| || |||| | | ||||||||| | Sbjct 62709 AGGGAATTTCTTATACC--GTGTTCCGCGATCTTCGCTTTCAATTCACACCAATCCCATA 62766 Query 75894 GATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 ||||| ||| ||| | ||| | ||| ||||| || || Sbjct 62767 AATCTGTTGGCTTAACGTTCCACATATCATATTGGAGGAT 62806 Score = 114 bits (126), Expect = 2e-20 Identities = 187/267 (70%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 || ||||| || || | | ||| | |||||||| | || || || ||||| || || Sbjct 64616 CTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGCGTTGGTGAAGCATGTGTAAAA 64675 Query 77033 CATTTTTCAGA-AAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAAT 77091 || ||| || || || ||| |||||||| || ||| || || || | |||||| Sbjct 64676 TATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTTCCATGAAT 64734 Query 77092 TCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTT 77151 || ||||| || | |||||||||||||||||| | ||| || ||||| || ||||| Sbjct 64735 ACCAACAGCTACTCTCATCAACATATGCTGAGGCCTTTCGACTATCTTAGAGTTGATTTT 64794 Query 77152 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTC 77211 || |||||| | | || | ||||||||||||| ||| || || ||||||| || Sbjct 64795 CAGCAAGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGTCTCGATC 64854 Query 77212 GTAAATAATAACCGAATTTAGTTTGTC 77238 ||| || || | || | ||||| || Sbjct 64855 GTATATTATGGCAGAGTCCAGTTTCTC 64881 Score = 100 bits (110), Expect = 4e-16 Identities = 106/137 (77%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 || ||||||||| |||||||||||| | || | |||| |||||| |||||||| || Sbjct 63643 TTTAAATTCATCGCCCCAAACATCAGCTAAGCGAGGAGATTCATATGGACACATTAAGCT 63702 Query 76579 CCACTCACCATCTTCCTTA---ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 76635 ||| || | || || ||| || |||| |||||| ||||| ||||||||||||||| Sbjct 63703 CCA--CATC-TCGTCATTATACACACGTTCCATAAAAAGATCTGGTATCCATAGAGCATA 63759 Query 76636 AAATAGATCTCGGGTTC 76652 ||||| ||||| || || Sbjct 63760 AAATAAATCTCTGGCTC 63776 Score = 95.1 bits (104), Expect = 2e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 ||| ||||||||||| || | | |||| | ||| ||||| || ||||| ||||| || Sbjct 62902 ATACGTTTCGTAAGTGCCTTTTTCCGCAGCCAATTCACAACTGGCTTCTAAGGCACCATA 62961 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 ||||| ||||||||||| || | ||||| |||| ||| || || || || ||||| Sbjct 62962 ATAAAGCGTTTCGAAAATTTTAATGTTAAGTTCTTTCGCCTCTTTGCTCTCGAAGGGATA 63021 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122 | | || | || |||||||||| || || | ||||||||| Sbjct 63022 TCGCATTAGTAGGAACGCATCTGCTAAACCTTGTATTCCAATACC 63066 Score = 87.8 bits (96), Expect = 3e-12 Identities = 214/318 (67%), Gaps = 10/318 (3%) Strand=Plus/Plus Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 ||||||||||||| ||||| ||| || ||| | |||| ||||| ||| | |||| Sbjct 63138 TACCAATAGGTCTGTGTCTACGATTAGATGTTTTCGTTTCTTCGATAGGATAAAAGTTAA 63197 Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238 || || | ||||| ||||| | ||| | ||| | || || ||||| || Sbjct 63198 CGTCGATGACTTTATCTAGATTACGAGTAACGATTTTCGCGACTGTTTTAAGTTTATCAA 63257 Query 76239 AATC-AAATTTTCCATCT-----ATCACAAACATATTAAGAGCTATAGATGCTAGATTAC 76292 |||| ||| ||| | | | | |||||||| || | ||| |||||||||| ||||| Sbjct 63258 AATCGAAAGTTTTCGTGTCTGTATTAACAAACATGTTGACAGCGATAGATGCTAAATTAC 63317 Query 76293 AAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACT 76352 | || || || || || | || |||| | || || ||||| | || || || | Sbjct 63318 ACACAGCGACTTCTCCAGGACCGGAGTATTCAACAATTTCGGTGCACAAGTTGCTGCATT 63377 Query 76353 TGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG-TTAC-ATGAGTCCTTATAAAGAAC 76410 ||||||| || | || || || || | |||| | || | |||| || |||||||| | Sbjct 63378 TGATAGTGCCTATATGCTGATGATT-CGATTTTCGATTGCAATGA-TCTTTATAAAGCAT 63435 Query 76411 AAACGGAGTTCCAGTTTC 76428 | | || ||||| ||||| Sbjct 63436 ATAAGGTGTTCCGGTTTC 63453 Score = 86.0 bits (94), Expect = 9e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 75443 CTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATA 75502 ||||| ||| |||||||||| || ||||| | ||||||| ||||||||||| Sbjct 62224 CTCCAGCCGAAGAAATGCATCGAAGTAAGTTTCTCAGTTGTCGGATCTCCTATATGAATA 62283 Query 75503 TTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTC 75562 || | ||||| |||||| || |||||||||| ||| || ||||||| | ||| Sbjct 62284 TTTAGAGACTGTGATTGATCAATAAAAGCTCCTCGATCGGCTGCCATTTCGAGAATTACT 62343 Query 75563 TTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 75612 ||||| || || ||||| | | | || ||| | ||| | |||||| || Sbjct 62344 TTTTGTGGTATCTCCCAGACAATCTTATAAAGCTCTTTCAAATCATCGGG 62393 >seq9873 Length=3435365 Score = 100 bits (110), Expect = 4e-16 Identities = 162/231 (70%), Gaps = 9/231 (4%) Strand=Plus/Minus Query 46422 AACATTATAAAtt---tttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTC 46478 ||| ||||| ||| |||| |||||||||| | | || ||| || || || ||||| Sbjct 2563449 AACTTTATATATTACCTTTTCAAATCCTAATGCAACGAACAATCTGTCCGCGACAAATTC 2563390 Query 46479 TATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGT 46538 || || | ||| | | |||||||| ||||| | || ||| |||| |||| || Sbjct 2563389 GATGTAATTACACATAAGTGTGCAATTCATACCTATTAATTCGACAGGTAATGCCTGTGT 2563330 Query 46539 AAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACT 46598 | ||| |||| |||||| || |||||| ||| |||||| | || | |||| Sbjct 2563329 TAAAAATTCTTTTTCAATTTCCACGGCATCCATTATAATCGATTTCACA---TGCTCAAA 2563273 Query 46599 TGGTGGAT---GCATCAAATGTTTAAACATTAAACATGCAAAATCACAATG 46646 || ||| | | || | |||||||||||||||||| || ||||||||||| Sbjct 2563272 TGATGGCTTTTGTATGATATGTTTAAACATTAAACAGGCGAAATCACAATG 2563222 Score = 89.7 bits (98), Expect = 7e-13 Identities = 87/111 (78%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 47110 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATAC 47169 ||| ||| ||| | || ||||||||| ||||||| || || || | || ||||||||| Sbjct 2561946 ATACCTTGTGA-AGATTTACTTCTTCTACTGTCCAAAAAGAGGCTACAGCCTTTTTATAC 2561888 Query 47170 ATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGA 47220 || ||||| || ||| ||||||| || ||||| || ||||| | ||||||| Sbjct 2561887 ATGTTCCAGATGTCAGGATATTGAATAGGAAACATTACAAAACGATTTGGA 2561837 Score = 89.7 bits (98), Expect = 7e-13 Identities = 144/203 (71%), Gaps = 8/203 (4%) Strand=Plus/Minus Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 || ||||| || ||||| | ||| || ||||| |||||||||||||| || ||| || Sbjct 2563110 AAGGTGAGACCTGGCATAATTCCTCGTTTTTTCAGCCAAAATATAGCTGCAAAACTACCG 2563051 Query 46741 GAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG--GCA- 46797 ||||| || ||||| |||||||| || ||||| | | | || | || || ||| Sbjct 2563050 CTGAAGAAAATACCTTCGACAGCCGCAAACGCGACTA--CACGTTCAGGAAATGTAGCAC 2562993 Query 46798 --TCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTT 46855 |||| || ||||| || ||||||| ||| ||||| |||||||| | ||| | Sbjct 2562992 TCTCATGATTGATCCAGTTTAATGCCCAATTAGCTTTTTTTCCCACACAAGGAAGTGTCT 2562933 Query 46856 CTATAGCATTAAA-GAGAAAGTT 46877 | | |||||||| ||||| || Sbjct 2562932 CAAGCGCATTAAATAAGAAATTT 2562910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712797347273280