Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq9873 102 8e-17 >seq9873 Length=3435365 Score = 102 bits (112), Expect = 8e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 |||||||| | |||||||||||| | ||||||||| || ||||| ||| |||||| Sbjct 2563101 CCTGGCATAATTCCTCGTTTTTTCAGCCAAAATATAGCTGCAAAACTACCGCTGAAGAAA 2563042 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAA 23688 ||||| || ||||||||||| || || | |||| | |||||| ||| | | || | Sbjct 2563041 ATACCTTCGACAGCCGCAAACGCGACTACACGTTCAGGAAATGTAGCACTCTCATGATTG 2562982 Query 23689 ATCCAtttttttGTCCAATTAGCCTT 23714 ||||| ||| || ||||||||| || Sbjct 2562981 ATCCAGTTTAATGCCCAATTAGCTTT 2562956 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/181 (72%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 23761 TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATA 23820 ||||||| ||| | ||||| || ||||| || ||| |||||| |||||||| || Sbjct 2562348 TTTTCTTTTGGATCAGAAATATACGTTTCAATGAGCAAAGAATACATCTCAGAATGGATG 2562289 Query 23821 TTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTA 23880 ||||| || ||||| ||||| ||||||||||| | ||||| | | || || || | | Sbjct 2562288 TTTTCTATTGCAATTTGAAAGCCATAAAAACAACGTGCTTCGGTAATTTTTACCTCTTGA 2562229 Query 23881 AAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGC-AAG 23939 ||||| | | | ||| || |||||||||||||| || |||||||| || ||| Sbjct 2562228 CTGAATCTCTCAATCAGATTCTCATTAACAATACCATCGGATGCGGCAAAGAATGCTAAG 2562169 Query 23940 A 23940 | Sbjct 2562168 A 2562168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521387750450600