Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq9764 132 3e-26
seq15293 107 1e-18
seq10177 95.1 9e-15
>seq9764
Length=1320143
Score = 132 bits (146), Expect = 3e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
|||||| |||| || | || ||||| ||||| ||| || ||||| |||||||||||
Sbjct 200561 CATTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATC 200502
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
|| |||| | |||| ||||||||||| || || ||||||||||| || ||||| |
Sbjct 200501 GGAGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGG 200442
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
||| | ||||| || || ||||| ||||| || |||| || || | || |||
Sbjct 200441 AGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTC 200382
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | || || || || || ||||| || ||||| |||||||||||
Sbjct 200381 AACTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCAT 200331
Score = 131 bits (144), Expect = 1e-25
Identities = 172/236 (73%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
|||||| |||| || | || ||||| ||||| ||| || ||||| |||||||||||
Sbjct 199877 CATTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATC 199818
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
|| |||| | |||| |||| |||||| || || ||||||||||| || ||||| |
Sbjct 199817 GGAGAGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGG 199758
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
||| | ||||| || || ||||| |||| | ||| |||| || || | | ||
Sbjct 199757 AGGAATGCCTTCTTTATCTTGGATCTT-GGCTTTGACATTCTCTATAGTATCAGAAGCTT 199699
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341
||||||| | || || || || || || || || ||||| |||||||||||||||
Sbjct 199698 CCACCTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCATGATG 199643
Score = 123 bits (136), Expect = 2e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
|||||| |||| || | || ||||| ||||| ||| || ||||| |||||||||||
Sbjct 200105 CATTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATC 200046
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
|| |||| | |||| ||||||||||| || || ||||||||||| || ||||| |
Sbjct 200045 GGAGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGG 199986
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
||| | ||||| || || ||||| |||| || |||| || || | || |||
Sbjct 199985 AGGAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTC 199926
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | || || || || || ||||| || || |||||||| |||||
Sbjct 199925 AACTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 199875
Score = 123 bits (136), Expect = 2e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
|||||| |||| || | || ||||| ||||| ||| || ||||| |||||||||||
Sbjct 200789 CATTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATC 200730
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
|| |||| | |||| ||||||||||| || || ||||||||||| || ||||| |
Sbjct 200729 GGAGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGG 200670
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
||| | ||||| || || ||||| |||| || |||| || || | || |||
Sbjct 200669 AGGAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTC 200610
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || | || || || || || ||||| || || |||||||| |||||
Sbjct 200609 AACTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 200559
Score = 107 bits (118), Expect = 1e-18
Identities = 164/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| |||||| |||| || | || |||| |||||| || || || || || |||||
Sbjct 200336 TTGCATTCCTCCTCGAAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTA 200277
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|| | |||| | |||| |||| |||||| || || ||||||||||| || |||||
Sbjct 200276 GTCTGAGAGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATC 200217
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283
| ||| | ||||| || || ||||| ||| | || |||| ||||| | ||
Sbjct 200216 AGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGC 200157
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || || | || || || || || ||||| || ||||||||||| |||||
Sbjct 200156 TTCAACTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCAT 200103
Score = 107 bits (118), Expect = 1e-18
Identities = 164/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| |||||| |||| || | || |||| |||||| || || || || || |||||
Sbjct 201020 TTGCATTCCTCCTCGAAGACGTAAAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTA 200961
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|| | |||| | |||| |||| |||||| || || ||||||||||| || |||||
Sbjct 200960 GTCTGAGAGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATC 200901
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283
| ||| | ||||| || || ||||| ||| | || |||| ||||| | ||
Sbjct 200900 AGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGC 200841
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || || | || || || || || ||||| || ||||||||||| |||||
Sbjct 200840 TTCAACTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCAT 200787
Score = 95.1 bits (104), Expect = 9e-15
Identities = 154/220 (70%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG--CGAGTTGGC 44177
|||| || || | ||| || ||| || ||||||||||||||||| | ||||| |
Sbjct 201232 AGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTT--C 201175
Query 44178 GCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTT 44237
|||| ||||| ||||| || || ||||| ||||| || ||||||| ||| | || |
Sbjct 201174 TGCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGGATTCCCT 201115
Query 44238 CCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCG 44297
| || ||| || || ||| | || | |||||||| | | ||| || || | |
Sbjct 201114 CTTTGTCCTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGGG 201055
Query 44298 TAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || || || || || || || |||||||| ||||||||
Sbjct 201054 TGATGGTTTTACCAGTAAGAGTTTTCACGAAAATTTGCAT 201015
>seq15293
Length=768699
Score = 107 bits (118), Expect = 1e-18
Identities = 143/196 (73%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
|| ||||| ||||| ||||| | ||| || |||| || || ||||| ||||| |||
Sbjct 127334 TCTTTTTGAATGTTATAATCAGAGAGAGTACGACCGTCTTCAAGTTGCTTTCCGGCGAAG 127393
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266
||||||||||||||||| | || | |||||||| || ||||| ||||| | |||
Sbjct 127394 ATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGGATCTT-TGCTTTTACGTT 127452
Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| | ||||| || | | || || |||| || || ||||| || || | ||||||||
Sbjct 127453 CTCAATGGTATCAGAAGCCTCGACTTCCAGAGTTATGGTCTTCCCGGTCAACGTCTTCAC 127512
Query 44326 GAAGATTTGCATGATG 44341
||| || |||||| ||
Sbjct 127513 GAAAATCTGCATGGTG 127528
Score = 105 bits (116), Expect = 5e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || | |||||||| |||| || || || ||||| || ||||| |||||
Sbjct 125926 CATACCACCGCGAAGTCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATC 125985
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || ||| |||| || ||||| || |||||||||||||| | |||||||||||
Sbjct 125986 AGAAAGCGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGG 126045
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
||| | ||||| || ||| || || |||| || | || ||||| | | |||
Sbjct 126046 AGGGATTCCTTCTTTGTCCTGAATTTTAGCTTTCACGTTTTCAATCGTGTCCGATGCTTC 126105
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| |||| || || || || || ||||| || || || || ||||||||
Sbjct 126106 GACTTCCAGAGTGATTGTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCAT 126156
Score = 105 bits (116), Expect = 5e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
|| ||||| ||||| ||||| | ||| || |||| || || ||||| ||||| |||
Sbjct 127106 TCTTTTTGAATGTTATAATCAGAGAGAGTACGGCCGTCTTCAAGTTGCTTTCCGGCGAAG 127165
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-T 44265
||||||||||||||||| | || | |||||||| ||| | | || |||| | | |
Sbjct 127166 ATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTGTCC-TGAATTTTGGCTTTGACGTT 127224
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| | || || || | | || || |||| ||| || || |||||||| ||||| || ||
Sbjct 127225 TTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGAC 127284
Query 44326 GAAGATTTGCAT 44337
|||||||||||
Sbjct 127285 AAAGATTTGCAT 127296
Score = 100 bits (110), Expect = 2e-16
Identities = 139/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
||||| ||||||||||| || | ||| ||| |||| || ||||| || ||||| ||
Sbjct 126878 TCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAA 126937
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGT 44265
|| || | ||||||||||| ||| | |||||||| | | | | || ||| || | |
Sbjct 126938 ATTAATCTCTGCTGATCTGGAGGGATTCCTTCCTTGT-CTTGAATTTTTGCTTTGACATT 126996
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| | || || || | | || || |||| ||| || || |||||||| ||||| || ||
Sbjct 126997 TTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGAC 127056
Query 44326 GAAGATTTGCAT 44337
|||||||||||
Sbjct 127057 AAAGATTTGCAT 127068
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
||||| ||||||||||| || | ||| ||| |||| || ||||| || ||||| ||
Sbjct 126194 TCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAA 126253
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266
|| || | ||||||||||| ||| | ||||| || || || || |||| ||
Sbjct 126254 ATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTT 126313
Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326
| || ||||||| | || || |||| || || || || || ||||| || || ||
Sbjct 126314 TCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACA 126373
Query 44327 AAGATTTGCAT 44337
|| ||||||||
Sbjct 126374 AAAATTTGCAT 126384
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
||||| ||||||||||| || | ||| ||| |||| || ||||| || ||||| ||
Sbjct 126422 TCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAA 126481
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266
|| || | ||||||||||| ||| | ||||| || || || || |||| ||
Sbjct 126482 ATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTT 126541
Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326
| || ||||||| | || || |||| || || || || || ||||| || || ||
Sbjct 126542 TCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACA 126601
Query 44327 AAGATTTGCAT 44337
|| ||||||||
Sbjct 126602 AAAATTTGCAT 126612
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
||||| ||||||||||| || | ||| ||| |||| || ||||| || ||||| ||
Sbjct 126650 TCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAA 126709
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266
|| || | ||||||||||| ||| | ||||| || || || || |||| ||
Sbjct 126710 ATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTT 126769
Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326
| || ||||||| | || || |||| || || || || || ||||| || || ||
Sbjct 126770 TCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACA 126829
Query 44327 AAGATTTGCAT 44337
|| ||||||||
Sbjct 126830 AAAATTTGCAT 126840
>seq10177
Length=3058365
Score = 95.1 bits (104), Expect = 9e-15
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 44150 TTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209
||||| || |||||||||| || || | || |||||||| || || || |||||
Sbjct 2346115 TTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGATG 2346174
Query 44210 AAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCT 44269
| ||||| ||||||| || | |||||||| ||| ||||| ||| | | |
Sbjct 2346175 AGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 2346234
Query 44270 ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAG 44329
||||| |||| | || ||||| | || || || || ||||||||||| ||||||||
Sbjct 2346235 ATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGAAA 2346294
Query 44330 ATTTGCATGATG 44341
|| |||||| ||
Sbjct 2346295 ATCTGCATGGTG 2346306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359922926436843
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |