Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq15293 102 8e-17
seq10177 89.7 5e-13
seq9764 84.2 2e-11
>seq15293
Length=768699
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || |||||||| | |||| ||| | || || || ||||||||||| || |||
Sbjct 127070 CCACCACGTAGACGAAGAACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAG 127129
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| || || ||||| |||||||| |||| ||||| || || | ||
Sbjct 127130 AGAGTACGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGG 127189
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || ||||||||| ||| |||| |||| ||| | | || || | ||| ||
Sbjct 127190 ATGCCTTCCTTGTCC-TGAATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCAAC 127248
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| ||| || ||||| |||||||| || || || || || |||||
Sbjct 127249 TTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCAT 127296
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || |||||||| | |||| ||| | || || || ||||||||||| || |||
Sbjct 127298 CCACCACGTAGACGAAGAACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAATCAGAG 127357
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| || || ||||| |||||||| |||| ||||| || || | ||
Sbjct 127358 AGAGTACGACCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGG 127417
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814
| || ||||| | | || | ||||||| ||| | | || || | ||| ||
Sbjct 127418 ATGCCTTCCTTAT-CTTGGATCTTTGCTTTTACGTTCTCAATGGTATCAGAAGCCTCGAC 127476
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| ||||| || || || |||| |||||| |||||||||||||||
Sbjct 127477 TTCCAGAGTTATGGTCTTCCCGGTCAACGTCTTCACGAAAATCTGCATG 127525
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731
|| || ||||| || |||||||| | || || | || || ||||| ||||| |||||
Sbjct 125738 TCTTTTTGAATATTGTAGTCGGACAAAGTCCGTCCATCCTCCAGCTGTTTGCCCGCGAAA 125797
Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791
||||| | ||||| || | |||| || || || || ||| |||| |||| |||
Sbjct 125798 ATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCT-TGAATTTTCGCTTTCACGTT 125856
Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
| | ||||| || || ||||||| || || |||||||| || || ||||| ||
Sbjct 125857 CTCGATCGTGTCAGACGCTTCGACCTCCAATGTGATAGTTTTACCAGTGAGAGTCTTGAC 125916
Query 41851 GAAAATCTGCAT 41862
||||||||||||
Sbjct 125917 GAAAATCTGCAT 125928
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || | || |||| |||||| || ||||||||||||||||| || ||
Sbjct 125930 CCACCGCGAAGTCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAA 125989
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| || ||||| || ||||| || |||| | ||| || || | ||
Sbjct 125990 AGCGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGG 126049
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | || |||||| ||| |||| |||| ||| | | ||||| | || ||
Sbjct 126050 ATTCCTTCTTTGTCC-TGAATTTTAGCTTTCACGTTTTCAATCGTGTCCGATGCTTCGAC 126108
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || ||||| || || || || || || ||||| |||||
Sbjct 126109 TTCCAGAGTGATTGTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCAT 126156
>seq10177
Length=3058365
Score = 89.7 bits (98), Expect = 5e-13
Identities = 133/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734
|| ||||| || || ||||| || || || | || || ||||| ||||| ||||| ||
Sbjct 2346115 TTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGATG 2346174
Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794
|| |||||||| || | |||| | ||||||||| ||| || ||| | |
Sbjct 2346175 AGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 2346234
Query 41795 ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854
| || ||| | ||| ||||| | || || ||||||||||| || || || ||||||
Sbjct 2346235 ATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGAAA 2346294
Query 41855 ATCTGCATG 41863
|||||||||
Sbjct 2346295 ATCTGCATG 2346303
>seq9764
Length=1320143
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||||||| || ||| || || |||||||| || ||||||
Sbjct 200557 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGAG 200498
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || | |||| || ||||||||||| ||||| |||| || ||||| || | |||
Sbjct 200497 AGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGA 200438
Query 41756 ACGCTCTCCTTGTC 41769
| || || |||||
Sbjct 200437 ATGCCTTCTTTGTC 200424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462215127834800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |