Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_002484.2
Length=56426
Score E
Sequences producing significant alignments: (Bits) Value
seq743 255 2e-63
seq97 197 5e-46
>seq743
Length=263205
Score = 255 bits (282), Expect = 2e-63
Identities = 520/762 (68%), Gaps = 23/762 (3%)
Strand=Plus/Minus
Query 4865 CTCCGCAGCGTCGACTGACCATCCGCGACCTGGTTGCGCCTGGCACCACTGAGTCGAACT 4924
|||||||||| |||||||||||||| || | ||||| || || | ||||| |
Sbjct 16318 CTCCGCAGCGCAAGTTGACCATCCGCGACTTGCTCGCGCCGGGTCAGACCGCGTCGAGCA 16259
Query 4925 CCGTCGAGTACGTCCGCGAGACCGGCTTCGTCAACAATGC-CGCTCCTGTTTCGGAAGGC 4983
|| || |||||| || || |||||| |||||| || ||| || || ||||||||
Sbjct 16258 ATGTTGAATACGTCAAGGAAACGGGCTTCACCAACAACGCTCGC-CCGGTGACGGAAGGC 16200
Query 4984 ACCCAGA---AGCCATACTCCGACCTGACCTTCGAACTGGAAAACGCGCCGGTTCGCACC 5040
|||| |||| | || ||| | |||||| | ||| | ||||||||||||||
Sbjct 16199 ---CAGACCAAGCCCAAGTCTGACATCACCTTCAATATGGCATCTGCGCCGGTTCGCACG 16143
Query 5041 ATCGCACACCTGTTCAAGGCAAGTCGCCAGATCCTGGACGACGCTTCGGCCTTGCAGAGC 5100
|| ||||| | |||||||| || |||||||| || || || | | ||| ||||
Sbjct 16142 ATAGCACATATCTTCAAGGCGTCACGTCAGATCCTTGATGATGCGCCTGGTTTGGCGAGC 16083
Query 5101 TACATCGATGCGCGCGCTCGTTACGGCCTGATGCTGGTCGAAGAATGTCAACTGCTCTAC 5160
|||||| |||| |||| |||||||||| | | || || ||| ||| || || |
Sbjct 16082 TACATCAATGCCCGCGGCACCTACGGCCTGAAGTTCGTTGAGGAAACTCAGCTTCTGACC 16023
Query 5161 GGGAACGGGACCGGCGCCAATCTGCACGGCATCATTCCGCAGGCACAGGCCTACGCGCCG 5220
|| ||||| || || || ||| |||| || | |||||||| || || ||||||
Sbjct 16022 GGCAACGGCACTGGTCAGAACCTGAACGGTATTGTGCCGCAGGCTTCTGCTTATGCGCCG 15963
Query 5221 CCGAGTGGCGTAGTGGTAACCGCCGAGCAGCGAATCGACCGCATCCGCCTGGCGATCCTT 5280
| | | | | || | | ||| ||| ||||| ||| | ||||| || | |
Sbjct 15962 TC-ATT--CAACGCGG---CTGACGAACAGGCTATCGATCGCCTTCGCCTCGCCCTGTTG 15909
Query 5281 CAGGCGCAACTGGCCGAGTTCCCGGCCAGCGGTATCGTGCTCAACCCCATCGACTGGGCG 5340
|||| ||||| | | ||||| | | |||| |||||||| | || |||||
Sbjct 15908 CAGGTTATCCTGGCGAATTATCCGGCGTCGGCTTTCGTTCTCAACCCGGTTGATTGGGCA 15849
Query 5341 CTGATCGAGCTGAACAAGGACGCCGAGAACCGTTACATCATCGGCAGCCCGCAGAACGGC 5400
| || || |||| |||||| | || || || ||| | |||| | || | || |
Sbjct 15848 CGCATTGAACTGACCAAGGATACTCAGGGTCGCTATATCGTTGGCAAC--GCCG--CGTC 15793
Query 5401 ACCACT----CCGACCCTCTGGCGTCTGCCGGTGGTGGAAACCCAGGCCATCACTCAGGA 5456
|| | ||| | |||||| ||| ||||||||||| | ||||| || || |
Sbjct 15792 TCCGATTGGCCCGTCGCTCTGGAATCTCCCGGTGGTGGAGTCGCAGGCGATGACCGCCGG 15733
Query 5457 CGAGTTCCTGACCGGTGCGTTCTCTCTCGGCGCCCAGATCTTCGACCGCATGGACATCGA 5516
|||||||||||| || |||||| |||||| || ||| | ||||| ||||||| | ||
Sbjct 15732 CGAGTTCCTGACGGGCGCGTTCAATCTCGGTGCGCAGGTATTCGATCGCATGGGTGTTGA 15673
Query 5517 GGTTCTGGTTTCCACCGAGAACGACAAGGACTTCGAGAACAACATGGTCACCATCCGCGC 5576
|||||| | || ||||| ||| | ||||| ||||| |||||| ||||||||| |
Sbjct 15672 GGTTCTTCTGTCGACCGAAAACTCGGACGACTTTGAGAAGAACATGTGCACCATCCGAGT 15613
Query 5577 TGAGGAGCGGCTGGCCTTCGCGGTCTATCGCCCCGAG-GCTT 5617
|| ||||| | ||||| ||||| |||||||||||| ||||
Sbjct 15612 GGAAGAGCGCATTGCCTTGGCGGTGTATCGCCCCGAGAGCTT 15571
>seq97
Length=479585
Score = 197 bits (218), Expect = 5e-46
Identities = 345/492 (70%), Gaps = 15/492 (3%)
Strand=Plus/Minus
Query 5137 GTCGAAGAATGTCAACTGCTCTACGGGAACGGGACCGGCGCCAATCTGCACGGCATCATT 5196
|||||||| || || ||| | || | || |||||| || |||| |||||||||
Sbjct 247632 GTCGAAGAGAACCAGCTTCTCAATGGCGATGGCACCGGCCAGAACCTGCTCGGCATCATC 247573
Query 5197 CCGCAGGCACAGGCCTACGCGCCGCCGAGTGGCGTAGTGGTAACCGCC---GAGCAGCGA 5253
||||||||| ||||| || ||| |||| | ||||| | | |
Sbjct 247572 CCGCAGGCAACGGCCTTTGCAGTCCCGGCTGGCACGACCATGCCCGCCACTGTGACCGGT 247513
Query 5254 ATCGACCGCATCCGCCTGGCGATCCTTCAGGCGCAACTGGCCGAGTTCCCGGCCAGCGGT 5313
|| |||||| | || ||||||| |||||||| ||||| || | ||||| | |||
Sbjct 247512 ATTGACCGCCTTCGTGTGGCGATGCTTCAGGCCGCTCTGGCTGAATATCCGGCAACGGGT 247453
Query 5314 ATCGTGCTCAACCCCATCGACTGGGCGCTGATCGAGCTGAACAAGGACGCCGAGAACCGT 5373
||| |||| ||| || |||||| | |||||| || |||||| || || ||||
Sbjct 247452 CACGTCCTCAGCCCGATTGACTGGACTTCGATCGAACTCCTGAAGGACACCCAGGGCCGT 247393
Query 5374 TACATCATCGGCAGCCCGCA--GAACGGCACCACTCCGACCCTCTGGCGTCTGCCGGTGG 5431
||||||||||||| |||||| ||||| | |||||||||||||| |||||||||| |
Sbjct 247392 TACATCATCGGCAACCCGCAGGGAACG--ATTGCTCCGACCCTCTGGGGTCTGCCGGTTG 247335
Query 5432 TGGAAACCCAGGCCAT-CACTCAGGACGAGTTCCTGACCGGTGCGTTCTCTCTCGGCGCC 5490
| ||||||||||| | |||| | ||||||| |||||||| ||| || || ||
Sbjct 247334 TCACGACCCAGGCCATGGCCGCAGG-CAAGTTCCTCACCGGTGCATTCAAGCTGGGTGCG 247276
Query 5491 CAGATCTTCGACCGCATGGACA---TCGAGGTTCTGGTTTCCACCGAGAACGACAAGGAC 5547
||||| ||||||||| ||| || ||| || || | ||||||||||| | |||
Sbjct 247275 CAGATTTTCGACCGC-TGG-CAGGCTCG-CGTCGAAGTCGCAACCGAGAACGAAGACGAC 247219
Query 5548 TTCGAGAACAACATGGTCACCATCCGCGCTGAGGAGCGGCTGGCCTTCGCGGTCTATCGC 5607
||| || ||| | |||||||||| ||| || ||||| || || | || ||||||||
Sbjct 247218 TTCATCAAGAACCTCGTCACCATCCTCGCAGAAGAGCGTCTTGCTCTGGCCGTCTATCGT 247159
Query 5608 CCCGAGGCTTTC 5619
|| || || |||
Sbjct 247158 CCAGAAGCGTTC 247147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 180438388026744
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |