Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq20 93.3 6e-14 >seq20 Length=12842 Score = 93.3 bits (102), Expect = 6e-14 Identities = 169/246 (69%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 35882 CTGATTCAAATGATATAtttttttGTTGAAGAAAAGAATGAAAACCCAAAACACCAATTC 35941 |||||||||| | | |||| ||| | ||| ||||||||||||| || |||| | Sbjct 6922 CTGATTCAAAAGGAACCATTTTACTTTGTAAAAATGAATGAAAACCCATCACGCCAAGAC 6981 Query 35942 CTATACTTCTTTCCTTTTTTGCCGAGTTCACCGCACGAGATAT---AGTTGGAGGTGCCT 35998 | ||||| | || || |||| || | || || ||| | |||| ||| | Sbjct 6982 CGATACTACGCTCTCTTATTGCGGAATATTTTGCTCGCTGTATTTCATTTGG---TGCTT 7038 Query 35999 TTTCTATAAAAATTGTTAAAGCATTATCCAACATTTCCATTACATCTTTTATAAAAAGAT 36058 | ||| ||| ||| ||||||| | | ||||| ||||| ||| ||||| | Sbjct 7039 GGTTTATGAAATCCTCTAATACATTATCAAGAAAACGCATTATATCTTCTATGAAAAGCT 7098 Query 36059 CGTTATCTTTCCATTCATCATAATATTCTAAATTTAAAGAAGATAAACAACAGACAGCTG 36118 | |||||||||||||| || || ||||| | ||||| || ||||||||||| ||||| | Sbjct 7099 CATTATCTTTCCATTCTTCGTAGTATTCAAGATTTACGGATGATAAACAACATACAGCAG 7158 Query 36119 TTCGTG 36124 | |||| Sbjct 7159 TGCGTG 7164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679801661977680