Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_003085.1 Length=49534 Score E Sequences producing significant alignments: (Bits) Value seq291 100 9e-17 seq812 96.9 1e-15 >seq291 Length=114804 Score = 100 bits (110), Expect = 9e-17 Identities = 283/429 (66%), Gaps = 12/429 (3%) Strand=Plus/Plus Query 1936 GTGTGGCGGAAGCAGAACGGCAGCGGCTTCGCCACCGACAGGTTCCGCCGCGTGCATGAG 1995 || ||| ||||||||||||| | ||||| ||||| | ||| || ||||||||| Sbjct 69691 GTCTGGGAGAAGCAGAACGGCTCCAGCTTCCATGCCGACCGCTTCAAGCGGGTGCATGAG 69750 Query 1996 CAGCCCGTCCACTTCTACCGAGCGGATGCGGCGTGGCGCGATGTGTTCCACCAAGTGCCC 2055 | | |||| || ||||| | || || || | |||||||| || | | || | || || Sbjct 69751 CTGGCCGTTCAATTCTATCCCGCCGAGACGCCTTGGCGCGACGTCTACAACGATGT-CCA 69809 Query 2056 GTC-ACCATGGATGCCAAGGCCCGGACGGTGACGCGACGAGCGCAGCCGCCGCACCT--- 2111 | | || ||| || ||| || ||||| ||| ||| | ||| ||||| ||| Sbjct 69810 GACGACGCCGGACGCGCTGGCGCGCACGGT---GCGGCGAAAGAAGCGGCCGCCCCTTAC 69866 Query 2112 CGGCGCCATCGGCGCCCACAAGTACACGTC--CGAGGACGGCGGCCCCCGCCTCATGACG 2169 |||| |||| |||| | | | | ||| | |||||||||| || ||||||||| Sbjct 69867 CGGCCAGATCGACGCCGGCCACT--ATGTCAGCCAGGACGGCGGGCCGCGCCTCATGCGC 69924 Query 2170 TCCGTGCTGGAAGTGCGAAACTGCCACGGGTTCGCCGTCAACGAGACACAGAAGCCAGTG 2229 || || | | ||||| ||| || || |||| || | ||| ||||||| Sbjct 69925 TCGGTCATCTACGTGCGCAACGCGCATGGCCGCGCCATCCATCCGACCGAGAAGCCGTCC 69984 Query 2230 GCGCTCGTGGAACCGCTGGTGCGCAATGCCTGCCCACCGGGGGGCCTCGTCGCGGACTTC 2289 ||||| | ||| ||| | |||| |||||| || || ||||| |||| |||| Sbjct 69985 GCGCTTCTCGAAATCCTGATCCGCACGAGCTGCCCTCCTGGCGGCCTGGTCGGCGACTGG 70044 Query 2290 TTCGCGGGCTCCGGCAGCACGGCGCTGGCCTGCCTCGCCACCGGCCGCCGCTTCATCGGT 2349 ||||| || || ||| ||| ||||||| |||||||||||| |||| Sbjct 70045 TTCGCCGGTTCGGGCGCGGCGGGCGAAGCCTGCCGGCTTTCCGGCCGCCGCTATCTCGGC 70104 Query 2350 TGCGACATC 2358 ||||| ||| Sbjct 70105 TGCGAGATC 70113 >seq812 Length=1388629 Score = 96.9 bits (106), Expect = 1e-15 Identities = 282/427 (66%), Gaps = 8/427 (2%) Strand=Plus/Minus Query 1936 GTGTGGCGGAAGCAGAACGGCAGCGGCTTCGCCACCGACAGGTTCCGCCGCGTGCATGAG 1995 || ||| |||||||||||||| ||||||| || ||| | ||| |||||||||||| Sbjct 1336808 GTCTGGGAGAAGCAGAACGGCACCGGCTTCCACAATGACCGCTTCAAGCGCGTGCATGAG 1336749 Query 1996 CAGCCCGTCCACTTCTACCGAGCGGATGCGGCGTGGCGCGATGTGTTCCACCAAGTGCCC 2055 | ||||||| ||||| | || || |||| |||||||| | | | || | || | Sbjct 1336748 TTGGCCGTCCAGTTCTATCCCGCCGAGACGGCCTGGCGCGACATCTACAACGACGTCCAG 1336689 Query 2056 GTCACCATGGATGCCAAGGCCCGGACGGTGACGCGACGAGC-GCAGCCGCCGCACCTCGG 2114 ||| |||||| | || || ||||| ||| | ||| | || || ||| ||| Sbjct 1336688 ACCACGCCGGATGCGACAGCGCGCACGGTTCGGCG-CAAGCAACGTCCTCCCCACACCGG 1336630 Query 2115 CGCCATCGGCGCCCACAAGTACACGTC--CGAGGACGGCGGCCCCCGCCTCATGACGTCC 2172 | |||| |||| | | | | ||| | | |||||||| || ||||||||| ||| Sbjct 1336629 CCAGATCGACGCCGGCCACT--ATGTCAGCCACGACGGCGGGCCGCGCCTCATGCGGTCA 1336572 Query 2173 GTGCTGGAAGTGCGAAACTGCCACGGGTTCGCCGTCAACGAGACACAGAAGCCAGTGGCG 2232 || | | || || ||||||||||| ||| || | ||| ||||||| || Sbjct 1336571 GTCATCTATGTCCGCAACTGCCACGGTCGCGCGATCCATCCGACCGAGAAGCCGTCATCG 1336512 Query 2233 CTCGTGGAACCGCTGGTGCGCAATGCCTGCCCACCGGGGGGCCTCGTCGCGGACTTCTTC 2292 || | ||| ||| | || | || || || ||||| |||| |||| ||| Sbjct 1336511 CTGCTCGAAATTCTGATTCGTACCAGTTGTCCCGAAGGCGGCCTGGTCGGCGACTGGTTC 1336452 Query 2293 GCGGGCTCCGGCAGCAC-GGCGCTGGCCTGCCTCGCCACCGGCCGCCGCTTCATCGGTTG 2351 || ||||||||| | | |||| ||||||| ||||||| |||| ||||||| Sbjct 1336451 GCCGGCTCCGGCTCCGCTGGCG-AAGCCTGCCGGCTGTCCGGCCGACGCTATCTCGGTTG 1336393 Query 2352 CGACATC 2358 || ||| Sbjct 1336392 TGAGATC 1336386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158384380608848