Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_003085.1
Length=49534
Score E
Sequences producing significant alignments: (Bits) Value
seq291 100 9e-17
seq812 96.9 1e-15
>seq291
Length=114804
Score = 100 bits (110), Expect = 9e-17
Identities = 283/429 (66%), Gaps = 12/429 (3%)
Strand=Plus/Plus
Query 1936 GTGTGGCGGAAGCAGAACGGCAGCGGCTTCGCCACCGACAGGTTCCGCCGCGTGCATGAG 1995
|| ||| ||||||||||||| | ||||| ||||| | ||| || |||||||||
Sbjct 69691 GTCTGGGAGAAGCAGAACGGCTCCAGCTTCCATGCCGACCGCTTCAAGCGGGTGCATGAG 69750
Query 1996 CAGCCCGTCCACTTCTACCGAGCGGATGCGGCGTGGCGCGATGTGTTCCACCAAGTGCCC 2055
| | |||| || ||||| | || || || | |||||||| || | | || | || ||
Sbjct 69751 CTGGCCGTTCAATTCTATCCCGCCGAGACGCCTTGGCGCGACGTCTACAACGATGT-CCA 69809
Query 2056 GTC-ACCATGGATGCCAAGGCCCGGACGGTGACGCGACGAGCGCAGCCGCCGCACCT--- 2111
| | || ||| || ||| || ||||| ||| ||| | ||| ||||| |||
Sbjct 69810 GACGACGCCGGACGCGCTGGCGCGCACGGT---GCGGCGAAAGAAGCGGCCGCCCCTTAC 69866
Query 2112 CGGCGCCATCGGCGCCCACAAGTACACGTC--CGAGGACGGCGGCCCCCGCCTCATGACG 2169
|||| |||| |||| | | | | ||| | |||||||||| || |||||||||
Sbjct 69867 CGGCCAGATCGACGCCGGCCACT--ATGTCAGCCAGGACGGCGGGCCGCGCCTCATGCGC 69924
Query 2170 TCCGTGCTGGAAGTGCGAAACTGCCACGGGTTCGCCGTCAACGAGACACAGAAGCCAGTG 2229
|| || | | ||||| ||| || || |||| || | ||| |||||||
Sbjct 69925 TCGGTCATCTACGTGCGCAACGCGCATGGCCGCGCCATCCATCCGACCGAGAAGCCGTCC 69984
Query 2230 GCGCTCGTGGAACCGCTGGTGCGCAATGCCTGCCCACCGGGGGGCCTCGTCGCGGACTTC 2289
||||| | ||| ||| | |||| |||||| || || ||||| |||| ||||
Sbjct 69985 GCGCTTCTCGAAATCCTGATCCGCACGAGCTGCCCTCCTGGCGGCCTGGTCGGCGACTGG 70044
Query 2290 TTCGCGGGCTCCGGCAGCACGGCGCTGGCCTGCCTCGCCACCGGCCGCCGCTTCATCGGT 2349
||||| || || ||| ||| ||||||| |||||||||||| ||||
Sbjct 70045 TTCGCCGGTTCGGGCGCGGCGGGCGAAGCCTGCCGGCTTTCCGGCCGCCGCTATCTCGGC 70104
Query 2350 TGCGACATC 2358
||||| |||
Sbjct 70105 TGCGAGATC 70113
>seq812
Length=1388629
Score = 96.9 bits (106), Expect = 1e-15
Identities = 282/427 (66%), Gaps = 8/427 (2%)
Strand=Plus/Minus
Query 1936 GTGTGGCGGAAGCAGAACGGCAGCGGCTTCGCCACCGACAGGTTCCGCCGCGTGCATGAG 1995
|| ||| |||||||||||||| ||||||| || ||| | ||| ||||||||||||
Sbjct 1336808 GTCTGGGAGAAGCAGAACGGCACCGGCTTCCACAATGACCGCTTCAAGCGCGTGCATGAG 1336749
Query 1996 CAGCCCGTCCACTTCTACCGAGCGGATGCGGCGTGGCGCGATGTGTTCCACCAAGTGCCC 2055
| ||||||| ||||| | || || |||| |||||||| | | | || | || |
Sbjct 1336748 TTGGCCGTCCAGTTCTATCCCGCCGAGACGGCCTGGCGCGACATCTACAACGACGTCCAG 1336689
Query 2056 GTCACCATGGATGCCAAGGCCCGGACGGTGACGCGACGAGC-GCAGCCGCCGCACCTCGG 2114
||| |||||| | || || ||||| ||| | ||| | || || ||| |||
Sbjct 1336688 ACCACGCCGGATGCGACAGCGCGCACGGTTCGGCG-CAAGCAACGTCCTCCCCACACCGG 1336630
Query 2115 CGCCATCGGCGCCCACAAGTACACGTC--CGAGGACGGCGGCCCCCGCCTCATGACGTCC 2172
| |||| |||| | | | | ||| | | |||||||| || ||||||||| |||
Sbjct 1336629 CCAGATCGACGCCGGCCACT--ATGTCAGCCACGACGGCGGGCCGCGCCTCATGCGGTCA 1336572
Query 2173 GTGCTGGAAGTGCGAAACTGCCACGGGTTCGCCGTCAACGAGACACAGAAGCCAGTGGCG 2232
|| | | || || ||||||||||| ||| || | ||| ||||||| ||
Sbjct 1336571 GTCATCTATGTCCGCAACTGCCACGGTCGCGCGATCCATCCGACCGAGAAGCCGTCATCG 1336512
Query 2233 CTCGTGGAACCGCTGGTGCGCAATGCCTGCCCACCGGGGGGCCTCGTCGCGGACTTCTTC 2292
|| | ||| ||| | || | || || || ||||| |||| |||| |||
Sbjct 1336511 CTGCTCGAAATTCTGATTCGTACCAGTTGTCCCGAAGGCGGCCTGGTCGGCGACTGGTTC 1336452
Query 2293 GCGGGCTCCGGCAGCAC-GGCGCTGGCCTGCCTCGCCACCGGCCGCCGCTTCATCGGTTG 2351
|| ||||||||| | | |||| ||||||| ||||||| |||| |||||||
Sbjct 1336451 GCCGGCTCCGGCTCCGCTGGCG-AAGCCTGCCGGCTGTCCGGCCGACGCTATCTCGGTTG 1336393
Query 2352 CGACATC 2358
|| |||
Sbjct 1336392 TGAGATC 1336386
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 158384380608848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |