Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_003324.1
Length=57416
Score E
Sequences producing significant alignments: (Bits) Value
seq854 167 9e-37
seq693 129 2e-25
seq1191 109 2e-19
seq812 95.1 4e-15
>seq854
Length=160767
Score = 167 bits (184), Expect = 9e-37
Identities = 167/214 (78%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 44069 CATGCCGAGCGC-TGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGG 44127
||||||||| || ||| | |||||| |||||||||| || |||||| ||||||| ||
Sbjct 887 CATGCCGAGTGCCTGC-ATGTAGGTTTCGAGGATGGTTTCCTGCTCCTCGCGCTCGTTGG 945
Query 44128 TGTCCTGCTTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCCT 44187
|||||||||||||| | | | | ||||| |||| | ||||||||| | ||||
Sbjct 946 CGTCCTGCTTGCGCATCCGCACGATGGTGCGCAGCGCCTTGACGTCGAAGCCGTTGCCCT 1005
Query 44188 TTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAGC 44247
| |||||| | || || || ||||||||||| ||| |||||||||||||| |||| |
Sbjct 1006 TGGCCTCGGCATAGACGTCGCGGATGTCGTCGGAGATCGTCTTCTTTTCTTCTTCCAGCC 1065
Query 44248 GTTCGATGCGGTGGATGAAGGCCTTGAGCTGATC 44281
| |||||||| | ||||| |||||||||||||||
Sbjct 1066 GCTCGATGCGCTCGATGATGGCCTTGAGCTGATC 1099
>seq693
Length=350174
Score = 129 bits (142), Expect = 2e-25
Identities = 150/201 (75%), Gaps = 6/201 (3%)
Strand=Plus/Plus
Query 44084 GAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGGTGTCCTGCTTGCGCA- 44142
||| ||||| || || |||| || ||||| ||||||| || ||||||||||||||
Sbjct 85469 GAGATAGGTCTCCAGAATGGTTTCCTGCTCAGCGCGCTCGTTGGCGTCCTGCTTGCGCAT 85528
Query 44143 --GCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCCTTTGCCTCGCCGTA 44200
|| ||| | |||| |||| | ||| | ||| | ||||| |||||| | ||
Sbjct 85529 TCGCACGATGG---TGCGCAACGCCTTGACGTCGTAACCGTTGCCCTTGGCCTCGGCATA 85585
Query 44201 CACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAGCGTTCGATGCGGTG 44260
||||| ||||||||||| ||| |||||||| ||||| |||| || |||||||| |
Sbjct 85586 GACATCGCGGATGTCGTCGGAGATCGTCTTCTTCTCTTCTTCCAGCCGCTCGATGCGCTC 85645
Query 44261 GATGAAGGCCTTGAGCTGATC 44281
||||| |||||||||||||||
Sbjct 85646 GATGATGGCCTTGAGCTGATC 85666
>seq1191
Length=688723
Score = 109 bits (120), Expect = 2e-19
Identities = 126/167 (75%), Gaps = 2/167 (1%)
Strand=Plus/Plus
Query 48640 CGAAGAAGCCGAACCCAATCGACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACA 48699
|||| | ||| ||||| |||||| | || ||| |||| | ||| | || |||| ||
Sbjct 410745 CGAAAACGCCAAACCCGGTCGACAAATATGTTGGCAGCCGCGTGCGGATGCGTCGCATCA 410804
Query 48700 TCATCGGCATGAGCCAGGAGACGCT-GGCTGCGCATCTCGGCATCACCTTCCAGCAGGTC 48758
| | || |||||||||||| ||| ||| ||| ||||| | || |||||||| ||
Sbjct 410805 TGCTGGGACTGAGCCAGGAGAAGCTCGGCGACGC-GCTCGGACTGACTTTCCAGCAAATC 410863
Query 48759 CAGAAATACGAAAAGGGCGCCAACCGCGTCGGCGCCAGCAGGCTGCA 48805
|||||||||||||| ||| |||||||| ||||||| ||| | |||||
Sbjct 410864 CAGAAATACGAAAAAGGCACCAACCGCATCGGCGCGAGCCGCCTGCA 410910
>seq812
Length=1388629
Score = 95.1 bits (104), Expect = 4e-15
Identities = 88/109 (81%), Gaps = 2/109 (2%)
Strand=Plus/Plus
Query 48690 CGCCGCAACATCATCGGCATGAGCCAGGAGACGCT-GGCTGCGCATCTCGGCATCACCTT 48748
||||||| ||| | |||||||||||||| | || ||| ||| ||||| | || ||
Sbjct 373962 CGCCGCATCATGCTGGGCATGAGCCAGGAAAAACTCGGCGAAGCA-CTCGGGCTGACATT 374020
Query 48749 CCAGCAGGTCCAGAAATACGAAAAGGGCGCCAACCGCGTCGGCGCCAGC 48797
||| || |||||||| ||||| |||||| ||||||||||||||||||||
Sbjct 374021 CCAACAAGTCCAGAAGTACGAGAAGGGCACCAACCGCGTCGGCGCCAGC 374069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 183606331634364
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |