Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq854 167 9e-37 seq693 129 2e-25 seq1191 109 2e-19 seq812 95.1 4e-15 >seq854 Length=160767 Score = 167 bits (184), Expect = 9e-37 Identities = 167/214 (78%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 44069 CATGCCGAGCGC-TGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGG 44127 ||||||||| || ||| | |||||| |||||||||| || |||||| ||||||| || Sbjct 887 CATGCCGAGTGCCTGC-ATGTAGGTTTCGAGGATGGTTTCCTGCTCCTCGCGCTCGTTGG 945 Query 44128 TGTCCTGCTTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCCT 44187 |||||||||||||| | | | | ||||| |||| | ||||||||| | |||| Sbjct 946 CGTCCTGCTTGCGCATCCGCACGATGGTGCGCAGCGCCTTGACGTCGAAGCCGTTGCCCT 1005 Query 44188 TTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAGC 44247 | |||||| | || || || ||||||||||| ||| |||||||||||||| |||| | Sbjct 1006 TGGCCTCGGCATAGACGTCGCGGATGTCGTCGGAGATCGTCTTCTTTTCTTCTTCCAGCC 1065 Query 44248 GTTCGATGCGGTGGATGAAGGCCTTGAGCTGATC 44281 | |||||||| | ||||| ||||||||||||||| Sbjct 1066 GCTCGATGCGCTCGATGATGGCCTTGAGCTGATC 1099 >seq693 Length=350174 Score = 129 bits (142), Expect = 2e-25 Identities = 150/201 (75%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 44084 GAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGGTGTCCTGCTTGCGCA- 44142 ||| ||||| || || |||| || ||||| ||||||| || |||||||||||||| Sbjct 85469 GAGATAGGTCTCCAGAATGGTTTCCTGCTCAGCGCGCTCGTTGGCGTCCTGCTTGCGCAT 85528 Query 44143 --GCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCCTTTGCCTCGCCGTA 44200 || ||| | |||| |||| | ||| | ||| | ||||| |||||| | || Sbjct 85529 TCGCACGATGG---TGCGCAACGCCTTGACGTCGTAACCGTTGCCCTTGGCCTCGGCATA 85585 Query 44201 CACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAGCGTTCGATGCGGTG 44260 ||||| ||||||||||| ||| |||||||| ||||| |||| || |||||||| | Sbjct 85586 GACATCGCGGATGTCGTCGGAGATCGTCTTCTTCTCTTCTTCCAGCCGCTCGATGCGCTC 85645 Query 44261 GATGAAGGCCTTGAGCTGATC 44281 ||||| ||||||||||||||| Sbjct 85646 GATGATGGCCTTGAGCTGATC 85666 >seq1191 Length=688723 Score = 109 bits (120), Expect = 2e-19 Identities = 126/167 (75%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 48640 CGAAGAAGCCGAACCCAATCGACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAACA 48699 |||| | ||| ||||| |||||| | || ||| |||| | ||| | || |||| || Sbjct 410745 CGAAAACGCCAAACCCGGTCGACAAATATGTTGGCAGCCGCGTGCGGATGCGTCGCATCA 410804 Query 48700 TCATCGGCATGAGCCAGGAGACGCT-GGCTGCGCATCTCGGCATCACCTTCCAGCAGGTC 48758 | | || |||||||||||| ||| ||| ||| ||||| | || |||||||| || Sbjct 410805 TGCTGGGACTGAGCCAGGAGAAGCTCGGCGACGC-GCTCGGACTGACTTTCCAGCAAATC 410863 Query 48759 CAGAAATACGAAAAGGGCGCCAACCGCGTCGGCGCCAGCAGGCTGCA 48805 |||||||||||||| ||| |||||||| ||||||| ||| | ||||| Sbjct 410864 CAGAAATACGAAAAAGGCACCAACCGCATCGGCGCGAGCCGCCTGCA 410910 >seq812 Length=1388629 Score = 95.1 bits (104), Expect = 4e-15 Identities = 88/109 (81%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 48690 CGCCGCAACATCATCGGCATGAGCCAGGAGACGCT-GGCTGCGCATCTCGGCATCACCTT 48748 ||||||| ||| | |||||||||||||| | || ||| ||| ||||| | || || Sbjct 373962 CGCCGCATCATGCTGGGCATGAGCCAGGAAAAACTCGGCGAAGCA-CTCGGGCTGACATT 374020 Query 48749 CCAGCAGGTCCAGAAATACGAAAAGGGCGCCAACCGCGTCGGCGCCAGC 48797 ||| || |||||||| ||||| |||||| |||||||||||||||||||| Sbjct 374021 CCAACAAGTCCAGAAGTACGAGAAGGGCACCAACCGCGTCGGCGCCAGC 374069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183606331634364