Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq743 104 2e-17 seq1191 93.3 3e-14 seq1494 84.2 2e-11 >seq743 Length=263205 Score = 104 bits (114), Expect = 2e-17 Identities = 177/250 (71%), Gaps = 10/250 (4%) Strand=Plus/Minus Query 80348 GGATTCATGGGCAAGAAGTGGGACGGCTCGGGCA---TCGCCTTCGACGTCGAGATGTGG 80404 ||||||||||||||| | |||||| ||||| |||||||| | || | ||| Sbjct 30995 GGATTCATGGGCAAGCAATGGGACA---CGGGCGAGGTCGCCTTCTCGGAAGAATTCTGG 30939 Query 80405 GAGCAATGCCTGCGGGTCCTCAAGCCCGGTGGGCACCT-GCTCGCCTTCGGCGGCTCCCG 80463 || |||||| || || || || || |||||| | ||| || ||||||| || || Sbjct 30938 TCCGAAGTCCTGCGCGTGCTGAAACCTGGCGGGCACGTCGCT-GCGTTCGGCGCATCGCG 30880 Query 80464 CACCTGGCACCGGCTGACCGTG-GCCATCGAGGACGCCGGGTTTGAGATCCGCGACTCGA 80522 | || ||||| || | ||| || ||||| || || |||||||| |||||||||||| Sbjct 30879 CGGCTATCACCGCATGGC-GTGCGCGATCGAAGATGCGGGGTTTGAAATCCGCGACTCGC 30821 Query 80523 TCGCCTGGCTGTACGGCAGCGGGTTCCCGAAGTCGCTCGACGTGGCGAAGGCGATCGACA 80582 || ||| | || || | ||||| |||||||||| || ||| |||| ||| || | Sbjct 30820 TCATGTGGATTTATGGGACGGGGTTTCCGAAGTCGCATGATGTGAGCAAGGGGATTGATA 30761 Query 80583 AGGCGGGGGG 80592 | |||| ||| Sbjct 30760 AAGCGGCGGG 30751 >seq1191 Length=688723 Score = 93.3 bits (102), Expect = 3e-14 Identities = 136/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 99670 TCTGTAACCACGGGCTGGAGAAGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACAT 99729 ||||| || ||||| || || || ||||| |||| || || ||| |||| ||| Sbjct 597379 TCTGTCACGACGGGTGTCAGCAGATGCGGGATGCCGTCATAGACGGAGAGTTCGAG-CAT 597437 Query 99730 -TTGGGGTCGATCATGATGAGTTTGACCC-GATCAGGGGTCGCCCGGTAGAGCAGCGAAA 99787 || ||||||| ||||||||| ||| | | || || || ||||||||||||||| | Sbjct 597438 CTTCGGGTCGACCATGATGAGGC-GACACTGGTCGGGCCTCAGCCGGTAGAGCAGCGACA 597496 Query 99788 CCAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGAT 99847 | ||| | ||| ||| | ||||||||||| ||||| | ||| || | |||||||| Sbjct 597497 GGATCATGGTGTTAATGCCGACCGACTTGCCCGAGCCGGTGGTGCCGGCGATCAGCAGAT 597556 Query 99848 GCGGCAT 99854 ||||||| Sbjct 597557 GCGGCAT 597563 >seq1494 Length=1074632 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/148 (74%), Gaps = 7/148 (5%) Strand=Plus/Minus Query 80913 CTGCGAAGCAGTGGCAGGGATGGGGCACAGCGCTGAAACCATCGTTTGAGCCCATCGTGG 80972 |||||| | | |||| || |||||||| || |||||||||| | ||||| ||| Sbjct 599268 CTGCGAGGAA-TGGCGAGGCTGGGGCACGGCCTTGAAACCATCTGTGGAGCCGATCTGTC 599210 Query 80973 TCGCGCGCAAGCCTCTCG-TGG-----GCACGGTGGCGGCGAATGTCCTGGAGCACGGTA 81026 |||||||||||||||| | | | |||||| || ||||| ||||| | ||||| | Sbjct 599209 TCGCGCGCAAGCCTCTGGATAGAAACAACACGGTCGCCGCGAACATCCTGCAACACGGAA 599150 Query 81027 CGGGGGCGTTGAACATCGACGCCTGCCG 81054 |||| || | || ||||| |||||||| Sbjct 599149 CGGGCGCCATTAATATCGATGCCTGCCG 599122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354636721001214