Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_004688.1
Length=110865
Score E
Sequences producing significant alignments: (Bits) Value
seq743 104 2e-17
seq1191 93.3 3e-14
seq1494 84.2 2e-11
>seq743
Length=263205
Score = 104 bits (114), Expect = 2e-17
Identities = 177/250 (71%), Gaps = 10/250 (4%)
Strand=Plus/Minus
Query 80348 GGATTCATGGGCAAGAAGTGGGACGGCTCGGGCA---TCGCCTTCGACGTCGAGATGTGG 80404
||||||||||||||| | |||||| ||||| |||||||| | || | |||
Sbjct 30995 GGATTCATGGGCAAGCAATGGGACA---CGGGCGAGGTCGCCTTCTCGGAAGAATTCTGG 30939
Query 80405 GAGCAATGCCTGCGGGTCCTCAAGCCCGGTGGGCACCT-GCTCGCCTTCGGCGGCTCCCG 80463
|| |||||| || || || || || |||||| | ||| || ||||||| || ||
Sbjct 30938 TCCGAAGTCCTGCGCGTGCTGAAACCTGGCGGGCACGTCGCT-GCGTTCGGCGCATCGCG 30880
Query 80464 CACCTGGCACCGGCTGACCGTG-GCCATCGAGGACGCCGGGTTTGAGATCCGCGACTCGA 80522
| || ||||| || | ||| || ||||| || || |||||||| ||||||||||||
Sbjct 30879 CGGCTATCACCGCATGGC-GTGCGCGATCGAAGATGCGGGGTTTGAAATCCGCGACTCGC 30821
Query 80523 TCGCCTGGCTGTACGGCAGCGGGTTCCCGAAGTCGCTCGACGTGGCGAAGGCGATCGACA 80582
|| ||| | || || | ||||| |||||||||| || ||| |||| ||| || |
Sbjct 30820 TCATGTGGATTTATGGGACGGGGTTTCCGAAGTCGCATGATGTGAGCAAGGGGATTGATA 30761
Query 80583 AGGCGGGGGG 80592
| |||| |||
Sbjct 30760 AAGCGGCGGG 30751
>seq1191
Length=688723
Score = 93.3 bits (102), Expect = 3e-14
Identities = 136/187 (73%), Gaps = 4/187 (2%)
Strand=Plus/Plus
Query 99670 TCTGTAACCACGGGCTGGAGAAGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACAT 99729
||||| || ||||| || || || ||||| |||| || || ||| |||| |||
Sbjct 597379 TCTGTCACGACGGGTGTCAGCAGATGCGGGATGCCGTCATAGACGGAGAGTTCGAG-CAT 597437
Query 99730 -TTGGGGTCGATCATGATGAGTTTGACCC-GATCAGGGGTCGCCCGGTAGAGCAGCGAAA 99787
|| ||||||| ||||||||| ||| | | || || || ||||||||||||||| |
Sbjct 597438 CTTCGGGTCGACCATGATGAGGC-GACACTGGTCGGGCCTCAGCCGGTAGAGCAGCGACA 597496
Query 99788 CCAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGAT 99847
| ||| | ||| ||| | ||||||||||| ||||| | ||| || | ||||||||
Sbjct 597497 GGATCATGGTGTTAATGCCGACCGACTTGCCCGAGCCGGTGGTGCCGGCGATCAGCAGAT 597556
Query 99848 GCGGCAT 99854
|||||||
Sbjct 597557 GCGGCAT 597563
>seq1494
Length=1074632
Score = 84.2 bits (92), Expect = 2e-11
Identities = 109/148 (74%), Gaps = 7/148 (5%)
Strand=Plus/Minus
Query 80913 CTGCGAAGCAGTGGCAGGGATGGGGCACAGCGCTGAAACCATCGTTTGAGCCCATCGTGG 80972
|||||| | | |||| || |||||||| || |||||||||| | ||||| |||
Sbjct 599268 CTGCGAGGAA-TGGCGAGGCTGGGGCACGGCCTTGAAACCATCTGTGGAGCCGATCTGTC 599210
Query 80973 TCGCGCGCAAGCCTCTCG-TGG-----GCACGGTGGCGGCGAATGTCCTGGAGCACGGTA 81026
|||||||||||||||| | | | |||||| || ||||| ||||| | ||||| |
Sbjct 599209 TCGCGCGCAAGCCTCTGGATAGAAACAACACGGTCGCCGCGAACATCCTGCAACACGGAA 599150
Query 81027 CGGGGGCGTTGAACATCGACGCCTGCCG 81054
|||| || | || ||||| ||||||||
Sbjct 599149 CGGGCGCCATTAATATCGATGCCTGCCG 599122
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354636721001214
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |