Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq229 109 6e-19 seq998 98.7 1e-15 seq811 91.5 2e-13 seq1095 86.0 7e-12 >seq229 Length=9755 Score = 109 bits (120), Expect = 6e-19 Identities = 184/264 (70%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 || ||||| | ||| || ||||||| || |||| | || | | ||||||||| Sbjct 7028 CCATGAGTTAAATGTCCACCGCAGTTCAGTGACAATCCAAGTATTGTATCACCCGGAGCA 6969 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || |||| | ||||| || ||||| || ||||| |||||||||||||| ||||| Sbjct 6968 AGCAGTGAAGCAAACACTGCTTGATTTGCCTGAGAACCAGAATGAGGTTGAACATTTGCA 6909 Query 7058 AAATTGCAACTAAACAG-TTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGC 7116 || || || ||| || || ||| | || || ||||| || || | |||||| | Sbjct 6908 AATTTAACACCAAATAGCTTACAAAGC-CTTTCTATAGCCAGATTTTCAACTTCATCTAC 6850 Query 7117 TTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAA 7176 | | ||||| | ||||| | ||| || ||||| || || ||||| || || || | Sbjct 6849 ATACTCACAGCCACAGTAATATCTTTTACCAGGATAACCTTCTGCATATTTATTAGTCAG 6790 Query 7177 AATAGAACCCTGTGCTTTCATAAC 7200 || |||||||||||||| ||| || Sbjct 6789 AAAAGAACCCTGTGCTTCCATCAC 6766 >seq998 Length=1052685 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 6497 ACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAATACCCGGGAAGATAGCA 6556 || || || || ||||| ||||| | ||||||||||| || | || |||||||| || Sbjct 448407 ACCGCCTTGGCGGCGATGACATGCATCAGCGGGCCGCCCTGCAGGCCGGGGAAGATCGCC 448348 Query 6557 GAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATGAGGCCACCACGAGGGCCG 6616 ||||| | ||||||||||| || | ||||| || || || ||||| ||||| |||||| Sbjct 448347 GAATTGATCTTCTTGGCGATCTCCTCGTCGTTGGTGAGGATCAGGCCGCCACGCGGGCCG 448288 Query 6617 CGCA 6620 |||| Sbjct 448287 CGCA 448284 >seq811 Length=194255 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 6479 AGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGA 6538 || ||||| ||||| ||| || || | ||||| || || | ||||| || || ||| Sbjct 149799 AGCGCTTCGGCAAAAGCAACAGCCTTACCGGCGATGACGTGCATCAGCGGACCACCCTGA 149858 Query 6539 ATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATG 6598 | ||||||||| | ||| ||||| | ||||||||||| || || ||||| || || || Sbjct 149859 AGACCCGGGAACACAGCCGAATTGATCTTCTTGGCGATGTCGGCGTCGTTGGTGAGGATC 149918 Query 6599 AGGCCACCACGAGGGCCGCG 6618 | |||||| || || ||||| Sbjct 149919 ATGCCACCGCGTGGTCCGCG 149938 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 7123 GCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGA 7182 ||||||||||||||| || ||||||||||| || || ||||| |||||||| | || || Sbjct 150431 GCAGCCGCCATAATAGCGCTTGCCCGGATAGCCTTCGGCATATTTGTTGGTGAGGATGGA 150490 Query 7183 ACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTCGGACGCAATCA 7232 |||||| |||| | |||| || || || |||||| || ||||||| Sbjct 150491 ACCCTGCGCTTCGAGAACAGCGCGCGAAACGATGTTTTCCGAGGCAATCA 150540 >seq1095 Length=1089284 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 6497 ACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAATACCCGGGAAGATAGCA 6556 || || || || ||||| ||||| | ||||||||||| || | || |||||||| || Sbjct 926555 ACCGCCTTGGCGGCGATCACATGCATCAGCGGGCCGCCCTGCAAGCCGGGGAAGATCGCG 926614 Query 6557 GAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATGAGGCCACCACGAGGGCCG 6616 || || | ||||||||||| || | ||||| || || |||||||| || |||||| Sbjct 926615 GAGTTGAGCTTCTTGGCGATCTCCTCGTCGTTGCACAGGATCAGGCCACCGCGCGGGCCG 926674 Query 6617 CGCAAAGTTTTATGAGTTGTAGTAGTA 6643 |||| | || || || || || ||| Sbjct 926675 CGCAGCGACTTGTGCGTCGTCGTCGTA 926701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555352793882040