Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_005135.1
Length=173591
Score E
Sequences producing significant alignments: (Bits) Value
seq229 109 6e-19
seq998 98.7 1e-15
seq811 91.5 2e-13
seq1095 86.0 7e-12
>seq229
Length=9755
Score = 109 bits (120), Expect = 6e-19
Identities = 184/264 (70%), Gaps = 2/264 (1%)
Strand=Plus/Minus
Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997
|| ||||| | ||| || ||||||| || |||| | || | | |||||||||
Sbjct 7028 CCATGAGTTAAATGTCCACCGCAGTTCAGTGACAATCCAAGTATTGTATCACCCGGAGCA 6969
Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057
|| |||| | ||||| || ||||| || ||||| |||||||||||||| |||||
Sbjct 6968 AGCAGTGAAGCAAACACTGCTTGATTTGCCTGAGAACCAGAATGAGGTTGAACATTTGCA 6909
Query 7058 AAATTGCAACTAAACAG-TTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGC 7116
|| || || ||| || || ||| | || || ||||| || || | |||||| |
Sbjct 6908 AATTTAACACCAAATAGCTTACAAAGC-CTTTCTATAGCCAGATTTTCAACTTCATCTAC 6850
Query 7117 TTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAA 7176
| | ||||| | ||||| | ||| || ||||| || || ||||| || || || |
Sbjct 6849 ATACTCACAGCCACAGTAATATCTTTTACCAGGATAACCTTCTGCATATTTATTAGTCAG 6790
Query 7177 AATAGAACCCTGTGCTTTCATAAC 7200
|| |||||||||||||| ||| ||
Sbjct 6789 AAAAGAACCCTGTGCTTCCATCAC 6766
>seq998
Length=1052685
Score = 98.7 bits (108), Expect = 1e-15
Identities = 96/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 6497 ACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAATACCCGGGAAGATAGCA 6556
|| || || || ||||| ||||| | ||||||||||| || | || |||||||| ||
Sbjct 448407 ACCGCCTTGGCGGCGATGACATGCATCAGCGGGCCGCCCTGCAGGCCGGGGAAGATCGCC 448348
Query 6557 GAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATGAGGCCACCACGAGGGCCG 6616
||||| | ||||||||||| || | ||||| || || || ||||| ||||| ||||||
Sbjct 448347 GAATTGATCTTCTTGGCGATCTCCTCGTCGTTGGTGAGGATCAGGCCGCCACGCGGGCCG 448288
Query 6617 CGCA 6620
||||
Sbjct 448287 CGCA 448284
>seq811
Length=194255
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 6479 AGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGA 6538
|| ||||| ||||| ||| || || | ||||| || || | ||||| || || |||
Sbjct 149799 AGCGCTTCGGCAAAAGCAACAGCCTTACCGGCGATGACGTGCATCAGCGGACCACCCTGA 149858
Query 6539 ATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATG 6598
| ||||||||| | ||| ||||| | ||||||||||| || || ||||| || || ||
Sbjct 149859 AGACCCGGGAACACAGCCGAATTGATCTTCTTGGCGATGTCGGCGTCGTTGGTGAGGATC 149918
Query 6599 AGGCCACCACGAGGGCCGCG 6618
| |||||| || || |||||
Sbjct 149919 ATGCCACCGCGTGGTCCGCG 149938
Score = 91.5 bits (100), Expect = 2e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 7123 GCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGA 7182
||||||||||||||| || ||||||||||| || || ||||| |||||||| | || ||
Sbjct 150431 GCAGCCGCCATAATAGCGCTTGCCCGGATAGCCTTCGGCATATTTGTTGGTGAGGATGGA 150490
Query 7183 ACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTCGGACGCAATCA 7232
|||||| |||| | |||| || || || |||||| || |||||||
Sbjct 150491 ACCCTGCGCTTCGAGAACAGCGCGCGAAACGATGTTTTCCGAGGCAATCA 150540
>seq1095
Length=1089284
Score = 86.0 bits (94), Expect = 7e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 6497 ACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGAATACCCGGGAAGATAGCA 6556
|| || || || ||||| ||||| | ||||||||||| || | || |||||||| ||
Sbjct 926555 ACCGCCTTGGCGGCGATCACATGCATCAGCGGGCCGCCCTGCAAGCCGGGGAAGATCGCG 926614
Query 6557 GAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATGAGGCCACCACGAGGGCCG 6616
|| || | ||||||||||| || | ||||| || || |||||||| || ||||||
Sbjct 926615 GAGTTGAGCTTCTTGGCGATCTCCTCGTCGTTGCACAGGATCAGGCCACCGCGCGGGCCG 926674
Query 6617 CGCAAAGTTTTATGAGTTGTAGTAGTA 6643
|||| | || || || || || |||
Sbjct 926675 CGCAGCGACTTGTGCGTCGTCGTCGTA 926701
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 555352793882040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |