Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq743 214 6e-51 seq97 154 5e-33 >seq743 Length=263205 Score = 214 bits (236), Expect = 6e-51 Identities = 512/758 (68%), Gaps = 26/758 (3%) Strand=Plus/Minus Query 4705 CGCCGCCGCAACGGAAGATGACGATTCGCGATTTGCTCATGCCGGGCCAGACGTCGTCGA 4764 |||| ||||| || ||| |||| || ||||| |||||| |||||| ||||| |||||| Sbjct 16321 CGCCTCCGCAGCGCAAGTTGACCATCCGCGACTTGCTCGCGCCGGGTCAGACCGCGTCGA 16262 Query 4765 GTAGCATCGAGTACACCGTCGAAACCGGCTTCACGAACAACGCAGCGGCAGTAGCCGAAG 4824 | | | || ||| | ||||| |||||||| |||||||| | || | |||| Sbjct 16261 GCAATGTTGAATACGTCAAGGAAACGGGCTTCACCAACAACGCTCGCCCGGTGACGGAAG 16202 Query 4825 GCGCACAGAAA-CCGACTTCGGATCTGAAGTTCAATCTGAAGAACCAGC--CGGTTCGCA 4881 || || | || || | || || | | |||||| || | | | || ||||||||| Sbjct 16201 GC-CAGACCAAGCCCAAGTCTGACATCACCTTCAATATG--GCATCTGCGCCGGTTCGCA 16145 Query 4882 CGATCGCACATCTGTTCAAGGCGTCGCGTCAGATTCTCGACGATGCGCCGGCACTG-CAA 4940 |||| |||||| | ||||||||||| |||||||| || || |||||||| | || | | Sbjct 16144 CGATAGCACATATCTTCAAGGCGTCACGTCAGATCCTTGATGATGCGCCTGGTTTGGCGA 16085 Query 4941 TCGTATATCGACGGCCGTGCCCGGTACGGGCTTCAACTCACCGAGGAAGGCCAAATTCTG 5000 | || ||| | | ||| | | ||||| || | || |||||| || ||||| Sbjct 16084 GC-TACATCAATGCCCGCGGCACCTACGGCCTGAAGTTCGTTGAGGAAACTCAGCTTCTG 16026 Query 5001 AAGGGCGATGGTACCGGGGCGAACATTCTCGGCATCTTGCCCCAAGCGTCAGCGTTCATG 5060 | ||| | || || || |||| | ||| || |||| || || || || | ||| Sbjct 16025 ACCGGCAACGGCACTGGTCAGAACCTGAACGGTATTGTGCCGCAGGCTTCTGCTT--ATG 15968 Query 5061 C-----CATCCATCACG-CTCGCGAATGCGACGCCGATCGACAAGATCCGTCTGGCACTG 5114 | ||| || | || || |||| | |||||| | | || || || ||| Sbjct 15967 CGCCGTCATTCAACGCGGCTGACGAACAGGCTATCGATCGCC----TTCGCCTCGCCCTG 15912 Query 5115 TTGCAAGCAGTTCTCGCCGAATT-TCCGGCGACCGGGATCGTCCTGAATCCGATCGACTG 5173 ||||| | | || || ||||| ||||||| | | |||| || || ||| | || || Sbjct 15911 TTGCAGGTTATCCTGGC-GAATTATCCGGCGTCGGCTTTCGTTCTCAACCCGGTTGATTG 15853 Query 5174 GGCGTCGATCGAGTTGACGAAGGACAGCCAGGGGCGATACATCGTCGGCAAT-CCG-GTC 5231 ||| || || |||| ||||| | ||||| || || ||||| ||||| ||| ||| Sbjct 15852 GGCACGCATTGAACTGACCAAGGATACTCAGGGTCGCTATATCGTTGGCAACGCCGCGTC 15793 Query 5232 AACGGTACGACGCCGCGCCTGTGGAATCTGCCGGTCGTTGAAACGCAGGCGATGACTGCG 5291 || | | | || || |||||||| ||||| || || ||||||||||||| || Sbjct 15792 TCCGATTGGCC--CGTCGCTCTGGAATCTCCCGGTGGTGGAGTCGCAGGCGATGACCGCC 15735 Query 5292 AACGAATTCCTCGTCGGCGCCTTCTCGATGGCGGCTCAGATCTTCGACCGCATGGAGATC 5351 ||| ||||| ||||| ||| | | || ||| | ||||| ||||||| | Sbjct 15734 GGCGAGTTCCTGACGGGCGCGTTCAATCTCGGTGCGCAGGTATTCGATCGCATGGGTGTT 15675 Query 5352 GAGGTTCTTCTGTCGACCGAGAACGTCGACGACTTCGAAAAGAACATGGTGTCGATCCGT 5411 |||||||||||||||||||| ||| |||||||| || ||||||||| | ||||| Sbjct 15674 GAGGTTCTTCTGTCGACCGAAAACTCGGACGACTTTGAGAAGAACATGTGCACCATCCGA 15615 Query 5412 GCGGAGGAACGCCTCGCGCTTGCCGTCTATCGTCCGGA 5449 | ||| || ||| | || | || || ||||| || || Sbjct 15614 GTGGAAGAGCGCATTGCCTTGGCGGTGTATCGCCCCGA 15577 >seq97 Length=479585 Score = 154 bits (170), Expect = 5e-33 Identities = 324/476 (68%), Gaps = 23/476 (5%) Strand=Plus/Minus Query 4996 TTCTGAAGGGCGATGGTACCGGGGCGAACATTCTCGGCATCTTGCCCCAAGCGTCAGCGT 5055 |||| || |||||||| ||||| |||| | ||||||||| | || || || | || | Sbjct 247616 TTCTCAATGGCGATGGCACCGGCCAGAACCTGCTCGGCATCATCCCGCAGGCAACGGCCT 247557 Query 5056 T--CA--------TGCCATCCATCACGCTCGCGAATGCGACGCCGATCGACAAGATCCGT 5105 | || || || | | || || ||| | || ||| || ||| | ||| Sbjct 247556 TTGCAGTCCCGGCTGGCA-CGACCATGCCCGCCACTGTGACCGGTATTGACCGCCTTCGT 247498 Query 5106 CTGGCACTGTTGCAAGCAGTTCTCGCCGAATTTCCGGCGACCGGGATCGTCCTGAATCCG 5165 |||| || | || || | ||| || |||| |||||| || || |||||| | ||| Sbjct 247497 GTGGCGATGCTTCAGGCCGCTCTGGCTGAATATCCGGCAACGGGTCACGTCCTCAGCCCG 247438 Query 5166 ATCGACTGGGCGTCGATCGAGTTGACGAAGGACAGCCAGGGGCGATACATCGTCGGCAAT 5225 || |||||| | |||||||| | |||||||| |||||| || |||||| ||||||| Sbjct 247437 ATTGACTGGACTTCGATCGAACTCCTGAAGGACACCCAGGGCCGTTACATCATCGGCAAC 247378 Query 5226 CCGGTCAACGGTACGA---CGCCGCGCCTGTGGAATCTGCCGGTCGTTGAAACGCAGGCG 5282 ||| | || |||| | ||| ||| ||| ||||||||| || || ||||| Sbjct 247377 CCGC---AGGGAACGATTGCTCCGACCCTCTGGGGTCTGCCGGTTGTCACGACCCAGGCC 247321 Query 5283 ATGACTGCGAACGAATTCCTCGTCGGCGCCTTCTCGATGGCGGCTCAGATCTTCGACCGC 5342 ||| | || | | |||||| ||| || ||| | ||| || ||||| ||||||||| Sbjct 247320 ATGGCCGCAGGCAAGTTCCTCACCGGTGCATTCAAGCTGGGTGCGCAGATTTTCGACCGC 247261 Query 5343 ATGGAGA-TCGAGGTTCTTCTGTCG--ACCGAGAACGTCGACGACTTCGAAAAGAACATG 5399 | || ||| | || |||| |||||||||| ||||||||| |||||| | Sbjct 247260 TGGCAGGCTCGCG--TCGAA-GTCGCAACCGAGAACGAAGACGACTTCATCAAGAACCTC 247204 Query 5400 GTGTCGATCCGTGCGGAGGAACGCCTCGCGCTTGCCGTCTATCGTCCGGAATCGTT 5455 || | |||| || || || || || || || |||||||||||||| ||| |||| Sbjct 247203 GTCACCATCCTCGCAGAAGAGCGTCTTGCTCTGGCCGTCTATCGTCCAGAAGCGTT 247148 Score = 89.7 bits (98), Expect = 2e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 3068 CCAGTTGCTGGAGACGCGGGCATTCAACATCGAGGAAATCTGCCGCTGGTATCGCGTTCC 3127 |||| ||||||| |||||||| ||| | |||||||||||||| | | | ||||| Sbjct 249484 CCAGATGCTGGAAACGCGGGCTTTCTCGGTTGAGGAAATCTGCCGGTTCTTCGGGGTTCC 249425 Query 3128 GCCGTTTATGGTCGGCCACAGCGAGAAATCGACAAGCTGGGGAACTGGGATCGAACAACA 3187 || ||||||||||| | ||||||||| || |||||| | || || || ||||| Sbjct 249424 ACCTCACATGGTCGGCCATACGTCGAAATCGACTAGTTGGGGATCGGGCATTGAGCAACA 249365 Query 3188 GACGCTCGGCTTTTTGACATTCACCCTGCGGCCTTGGTTGACGCGGATTGAACAGGC 3244 ||| | | || || |||||||| || | | | ||| ||| || |||||||| Sbjct 249364 GACATTGGCATTCCAGAAGTTCACCCTTCGCCGTCGTCTGAAGCGCATCGAACAGGC 249308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175443276944426