Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_005284.1
Length=54865
Score E
Sequences producing significant alignments: (Bits) Value
seq743 214 6e-51
seq97 154 5e-33
>seq743
Length=263205
Score = 214 bits (236), Expect = 6e-51
Identities = 512/758 (68%), Gaps = 26/758 (3%)
Strand=Plus/Minus
Query 4705 CGCCGCCGCAACGGAAGATGACGATTCGCGATTTGCTCATGCCGGGCCAGACGTCGTCGA 4764
|||| ||||| || ||| |||| || ||||| |||||| |||||| ||||| ||||||
Sbjct 16321 CGCCTCCGCAGCGCAAGTTGACCATCCGCGACTTGCTCGCGCCGGGTCAGACCGCGTCGA 16262
Query 4765 GTAGCATCGAGTACACCGTCGAAACCGGCTTCACGAACAACGCAGCGGCAGTAGCCGAAG 4824
| | | || ||| | ||||| |||||||| |||||||| | || | ||||
Sbjct 16261 GCAATGTTGAATACGTCAAGGAAACGGGCTTCACCAACAACGCTCGCCCGGTGACGGAAG 16202
Query 4825 GCGCACAGAAA-CCGACTTCGGATCTGAAGTTCAATCTGAAGAACCAGC--CGGTTCGCA 4881
|| || | || || | || || | | |||||| || | | | || |||||||||
Sbjct 16201 GC-CAGACCAAGCCCAAGTCTGACATCACCTTCAATATG--GCATCTGCGCCGGTTCGCA 16145
Query 4882 CGATCGCACATCTGTTCAAGGCGTCGCGTCAGATTCTCGACGATGCGCCGGCACTG-CAA 4940
|||| |||||| | ||||||||||| |||||||| || || |||||||| | || | |
Sbjct 16144 CGATAGCACATATCTTCAAGGCGTCACGTCAGATCCTTGATGATGCGCCTGGTTTGGCGA 16085
Query 4941 TCGTATATCGACGGCCGTGCCCGGTACGGGCTTCAACTCACCGAGGAAGGCCAAATTCTG 5000
| || ||| | | ||| | | ||||| || | || |||||| || |||||
Sbjct 16084 GC-TACATCAATGCCCGCGGCACCTACGGCCTGAAGTTCGTTGAGGAAACTCAGCTTCTG 16026
Query 5001 AAGGGCGATGGTACCGGGGCGAACATTCTCGGCATCTTGCCCCAAGCGTCAGCGTTCATG 5060
| ||| | || || || |||| | ||| || |||| || || || || | |||
Sbjct 16025 ACCGGCAACGGCACTGGTCAGAACCTGAACGGTATTGTGCCGCAGGCTTCTGCTT--ATG 15968
Query 5061 C-----CATCCATCACG-CTCGCGAATGCGACGCCGATCGACAAGATCCGTCTGGCACTG 5114
| ||| || | || || |||| | |||||| | | || || || |||
Sbjct 15967 CGCCGTCATTCAACGCGGCTGACGAACAGGCTATCGATCGCC----TTCGCCTCGCCCTG 15912
Query 5115 TTGCAAGCAGTTCTCGCCGAATT-TCCGGCGACCGGGATCGTCCTGAATCCGATCGACTG 5173
||||| | | || || ||||| ||||||| | | |||| || || ||| | || ||
Sbjct 15911 TTGCAGGTTATCCTGGC-GAATTATCCGGCGTCGGCTTTCGTTCTCAACCCGGTTGATTG 15853
Query 5174 GGCGTCGATCGAGTTGACGAAGGACAGCCAGGGGCGATACATCGTCGGCAAT-CCG-GTC 5231
||| || || |||| ||||| | ||||| || || ||||| ||||| ||| |||
Sbjct 15852 GGCACGCATTGAACTGACCAAGGATACTCAGGGTCGCTATATCGTTGGCAACGCCGCGTC 15793
Query 5232 AACGGTACGACGCCGCGCCTGTGGAATCTGCCGGTCGTTGAAACGCAGGCGATGACTGCG 5291
|| | | | || || |||||||| ||||| || || ||||||||||||| ||
Sbjct 15792 TCCGATTGGCC--CGTCGCTCTGGAATCTCCCGGTGGTGGAGTCGCAGGCGATGACCGCC 15735
Query 5292 AACGAATTCCTCGTCGGCGCCTTCTCGATGGCGGCTCAGATCTTCGACCGCATGGAGATC 5351
||| ||||| ||||| ||| | | || ||| | ||||| ||||||| |
Sbjct 15734 GGCGAGTTCCTGACGGGCGCGTTCAATCTCGGTGCGCAGGTATTCGATCGCATGGGTGTT 15675
Query 5352 GAGGTTCTTCTGTCGACCGAGAACGTCGACGACTTCGAAAAGAACATGGTGTCGATCCGT 5411
|||||||||||||||||||| ||| |||||||| || ||||||||| | |||||
Sbjct 15674 GAGGTTCTTCTGTCGACCGAAAACTCGGACGACTTTGAGAAGAACATGTGCACCATCCGA 15615
Query 5412 GCGGAGGAACGCCTCGCGCTTGCCGTCTATCGTCCGGA 5449
| ||| || ||| | || | || || ||||| || ||
Sbjct 15614 GTGGAAGAGCGCATTGCCTTGGCGGTGTATCGCCCCGA 15577
>seq97
Length=479585
Score = 154 bits (170), Expect = 5e-33
Identities = 324/476 (68%), Gaps = 23/476 (5%)
Strand=Plus/Minus
Query 4996 TTCTGAAGGGCGATGGTACCGGGGCGAACATTCTCGGCATCTTGCCCCAAGCGTCAGCGT 5055
|||| || |||||||| ||||| |||| | ||||||||| | || || || | || |
Sbjct 247616 TTCTCAATGGCGATGGCACCGGCCAGAACCTGCTCGGCATCATCCCGCAGGCAACGGCCT 247557
Query 5056 T--CA--------TGCCATCCATCACGCTCGCGAATGCGACGCCGATCGACAAGATCCGT 5105
| || || || | | || || ||| | || ||| || ||| | |||
Sbjct 247556 TTGCAGTCCCGGCTGGCA-CGACCATGCCCGCCACTGTGACCGGTATTGACCGCCTTCGT 247498
Query 5106 CTGGCACTGTTGCAAGCAGTTCTCGCCGAATTTCCGGCGACCGGGATCGTCCTGAATCCG 5165
|||| || | || || | ||| || |||| |||||| || || |||||| | |||
Sbjct 247497 GTGGCGATGCTTCAGGCCGCTCTGGCTGAATATCCGGCAACGGGTCACGTCCTCAGCCCG 247438
Query 5166 ATCGACTGGGCGTCGATCGAGTTGACGAAGGACAGCCAGGGGCGATACATCGTCGGCAAT 5225
|| |||||| | |||||||| | |||||||| |||||| || |||||| |||||||
Sbjct 247437 ATTGACTGGACTTCGATCGAACTCCTGAAGGACACCCAGGGCCGTTACATCATCGGCAAC 247378
Query 5226 CCGGTCAACGGTACGA---CGCCGCGCCTGTGGAATCTGCCGGTCGTTGAAACGCAGGCG 5282
||| | || |||| | ||| ||| ||| ||||||||| || || |||||
Sbjct 247377 CCGC---AGGGAACGATTGCTCCGACCCTCTGGGGTCTGCCGGTTGTCACGACCCAGGCC 247321
Query 5283 ATGACTGCGAACGAATTCCTCGTCGGCGCCTTCTCGATGGCGGCTCAGATCTTCGACCGC 5342
||| | || | | |||||| ||| || ||| | ||| || ||||| |||||||||
Sbjct 247320 ATGGCCGCAGGCAAGTTCCTCACCGGTGCATTCAAGCTGGGTGCGCAGATTTTCGACCGC 247261
Query 5343 ATGGAGA-TCGAGGTTCTTCTGTCG--ACCGAGAACGTCGACGACTTCGAAAAGAACATG 5399
| || ||| | || |||| |||||||||| ||||||||| |||||| |
Sbjct 247260 TGGCAGGCTCGCG--TCGAA-GTCGCAACCGAGAACGAAGACGACTTCATCAAGAACCTC 247204
Query 5400 GTGTCGATCCGTGCGGAGGAACGCCTCGCGCTTGCCGTCTATCGTCCGGAATCGTT 5455
|| | |||| || || || || || || || |||||||||||||| ||| ||||
Sbjct 247203 GTCACCATCCTCGCAGAAGAGCGTCTTGCTCTGGCCGTCTATCGTCCAGAAGCGTT 247148
Score = 89.7 bits (98), Expect = 2e-13
Identities = 126/177 (71%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 3068 CCAGTTGCTGGAGACGCGGGCATTCAACATCGAGGAAATCTGCCGCTGGTATCGCGTTCC 3127
|||| ||||||| |||||||| ||| | |||||||||||||| | | | |||||
Sbjct 249484 CCAGATGCTGGAAACGCGGGCTTTCTCGGTTGAGGAAATCTGCCGGTTCTTCGGGGTTCC 249425
Query 3128 GCCGTTTATGGTCGGCCACAGCGAGAAATCGACAAGCTGGGGAACTGGGATCGAACAACA 3187
|| ||||||||||| | ||||||||| || |||||| | || || || |||||
Sbjct 249424 ACCTCACATGGTCGGCCATACGTCGAAATCGACTAGTTGGGGATCGGGCATTGAGCAACA 249365
Query 3188 GACGCTCGGCTTTTTGACATTCACCCTGCGGCCTTGGTTGACGCGGATTGAACAGGC 3244
||| | | || || |||||||| || | | | ||| ||| || ||||||||
Sbjct 249364 GACATTGGCATTCCAGAAGTTCACCCTTCGCCGTCGTCTGAAGCGCATCGAACAGGC 249308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 175443276944426
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |