Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_006552.1
Length=65195
Score E
Sequences producing significant alignments: (Bits) Value
seq1494 104 1e-17
seq1095 86.0 3e-12
>seq1494
Length=1074632
Score = 104 bits (114), Expect = 1e-17
Identities = 213/314 (68%), Gaps = 7/314 (2%)
Strand=Plus/Minus
Query 11201 ACTACCTCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGG 11260
|| |||||||| ||| | ||||| |||||||| | |||||||||| ||||| | ||
Sbjct 800 ACGACCTCGGTCGAGTACTTGTCCTTGCCGTCCTTGTCCTGCCACTTCCGGGTCTGGAGC 741
Query 11261 CTGCCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGC 11320
||| |||||||| |||| || |||||| ||| || ||| | |||| | | |||
Sbjct 740 GCGCCCTCGATGTAAACCTTGGCGCCCTTCTTCAGATACTGCTCCGCGACCTTGCAAAGC 681
Query 11321 CGGCCA---AAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGC 11377
| || || | ||||| || ||||||||||| |||| | | |||||| | |
Sbjct 680 CCCTCATTGAAAATGACGACGCGATGCCACTCGGTCTTTTCCTTGCGTTCGCCGGTGTTC 621
Query 11378 TTGTCTTTCCAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGACCGCCTTTCCGCCCGGG 11437
||||| |||| | ||| || || | ||||| || || || | ||| || ||
Sbjct 620 TTGTCACGCCAGGTCTCGGACGTCGCGATGCTGAGATTGGCGATCGGCCGCCCGTCCTGG 561
Query 11438 GTAGATCTTGCGTCTGGATCCTGGCCC--AGATGGCCGACCAGGATTACCTTGTTCACTC 11495
|| | || ||||| ||||| |||| ||| ||||| || |||||||| || |
Sbjct 560 GTGCGCCGGATATCGGGATC--GGCCCCGAGATTGCCCACCAGAATGACCTTGTTGACGC 503
Query 11496 CGCGTGCCATGGCT 11509
|| ||||||| ||
Sbjct 502 TGCCTGCCATGACT 489
>seq1095
Length=1089284
Score = 86.0 bits (94), Expect = 3e-12
Identities = 223/329 (68%), Gaps = 16/329 (5%)
Strand=Plus/Plus
Query 11200 CACTACCTCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAG 11259
||| || |||||| || | ||| |||| |||| | |||||||||||| | |
Sbjct 705769 CACGACTTCGGTGGAATAACGCTCCGCGCCGCTCTGGTCGGTCCACTTGCGGGTCTGCA- 705827
Query 11260 GCTG-CCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGC-C 11317
||| ||||||||||| |||| || ||||||| ||| ||||| | || | |||| |
Sbjct 705828 ACTGACCTTCGATGTAAACCTTGGCGCCCTTTTTCAGATATTGTTCGGC-AACGCGGCAC 705886
Query 11318 AGCC---GGCCAAAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTC 11374
|| | || |||| ||| || || ||||||||||| |||| ||| ||||||
Sbjct 705887 AGACCTTCGCTGAAGATCACCACGCGATGCCACTCGGTCTTTTCCTTGCGCTCGCCGGTG 705946
Query 11375 TGCTTGTCTTTCCAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGACCGCCTTTCCGCCC 11434
| |||||| |||| |||| || || | | || || || || | | ||| ||
Sbjct 705947 TTCTTGTCGCGCCAGGTTTCCGACGTCGCGATCCGCAGATTGGCGATCGGCCTGCCGTCC 706006
Query 11435 GGGGTAGATCTTG-CGTCTGGATCCTGGCCC--AGATGGCCGACCAGGATTACCTTGTTC 11491
|||| |||| || ||||| ||||| |||| ||||||||| || |||||||||
Sbjct 706007 TGGGT-CCGCTTGATTTCCGGATC--GGCCCCAAGATTGCCGACCAGAATGACCTTGTTC 706063
Query 11492 ACTCCGCGTGCCATGGCTCAGGCCTCCAC 11520
|| | | ||||| | | ||||||||
Sbjct 706064 ACGCTCCCCGCCATCG---ACGCCTCCAC 706089
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 208495390915084
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |