Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq1494 104 1e-17 seq1095 86.0 3e-12 >seq1494 Length=1074632 Score = 104 bits (114), Expect = 1e-17 Identities = 213/314 (68%), Gaps = 7/314 (2%) Strand=Plus/Minus Query 11201 ACTACCTCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGG 11260 || |||||||| ||| | ||||| |||||||| | |||||||||| ||||| | || Sbjct 800 ACGACCTCGGTCGAGTACTTGTCCTTGCCGTCCTTGTCCTGCCACTTCCGGGTCTGGAGC 741 Query 11261 CTGCCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGC 11320 ||| |||||||| |||| || |||||| ||| || ||| | |||| | | ||| Sbjct 740 GCGCCCTCGATGTAAACCTTGGCGCCCTTCTTCAGATACTGCTCCGCGACCTTGCAAAGC 681 Query 11321 CGGCCA---AAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGC 11377 | || || | ||||| || ||||||||||| |||| | | |||||| | | Sbjct 680 CCCTCATTGAAAATGACGACGCGATGCCACTCGGTCTTTTCCTTGCGTTCGCCGGTGTTC 621 Query 11378 TTGTCTTTCCAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGACCGCCTTTCCGCCCGGG 11437 ||||| |||| | ||| || || | ||||| || || || | ||| || || Sbjct 620 TTGTCACGCCAGGTCTCGGACGTCGCGATGCTGAGATTGGCGATCGGCCGCCCGTCCTGG 561 Query 11438 GTAGATCTTGCGTCTGGATCCTGGCCC--AGATGGCCGACCAGGATTACCTTGTTCACTC 11495 || | || ||||| ||||| |||| ||| ||||| || |||||||| || | Sbjct 560 GTGCGCCGGATATCGGGATC--GGCCCCGAGATTGCCCACCAGAATGACCTTGTTGACGC 503 Query 11496 CGCGTGCCATGGCT 11509 || ||||||| || Sbjct 502 TGCCTGCCATGACT 489 >seq1095 Length=1089284 Score = 86.0 bits (94), Expect = 3e-12 Identities = 223/329 (68%), Gaps = 16/329 (5%) Strand=Plus/Plus Query 11200 CACTACCTCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAG 11259 ||| || |||||| || | ||| |||| |||| | |||||||||||| | | Sbjct 705769 CACGACTTCGGTGGAATAACGCTCCGCGCCGCTCTGGTCGGTCCACTTGCGGGTCTGCA- 705827 Query 11260 GCTG-CCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGATTTCGGC-C 11317 ||| ||||||||||| |||| || ||||||| ||| ||||| | || | |||| | Sbjct 705828 ACTGACCTTCGATGTAAACCTTGGCGCCCTTTTTCAGATATTGTTCGGC-AACGCGGCAC 705886 Query 11318 AGCC---GGCCAAAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTC 11374 || | || |||| ||| || || ||||||||||| |||| ||| |||||| Sbjct 705887 AGACCTTCGCTGAAGATCACCACGCGATGCCACTCGGTCTTTTCCTTGCGCTCGCCGGTG 705946 Query 11375 TGCTTGTCTTTCCAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGACCGCCTTTCCGCCC 11434 | |||||| |||| |||| || || | | || || || || | | ||| || Sbjct 705947 TTCTTGTCGCGCCAGGTTTCCGACGTCGCGATCCGCAGATTGGCGATCGGCCTGCCGTCC 706006 Query 11435 GGGGTAGATCTTG-CGTCTGGATCCTGGCCC--AGATGGCCGACCAGGATTACCTTGTTC 11491 |||| |||| || ||||| ||||| |||| ||||||||| || ||||||||| Sbjct 706007 TGGGT-CCGCTTGATTTCCGGATC--GGCCCCAAGATTGCCGACCAGAATGACCTTGTTC 706063 Query 11492 ACTCCGCGTGCCATGGCTCAGGCCTCCAC 11520 || | | ||||| | | |||||||| Sbjct 706064 ACGCTCCCCGCCATCG---ACGCCTCCAC 706089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208495390915084