Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq733 91.5 2e-13 seq812 84.2 3e-11 seq1095 82.4 1e-10 >seq733 Length=265776 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/96 (82%), Gaps = 4/96 (4%) Strand=Plus/Plus Query 165220 GCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAA--TTCGTG 165277 ||||| |||||||||||||||||||||||| || |||| |||||| |||| |||| Sbjct 227112 GCCCAGATGGCGGAATTGGTAGACGCGCTGGCTTCAGGTGCCAGTGGCTTAACGGCCGTG 227171 Query 165278 GAGGTTCAAGTCCTCTCTTGGGCAC--TATTATGAA 165311 ||||||| |||||||| ||||||| |||||| || Sbjct 227172 GAGGTTCGAGTCCTCTTCTGGGCACCATATTATAAA 227207 >seq812 Length=1388629 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 165220 GCCCAAGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAAT--TAATTCGTG 165277 ||||| ||||||||||||||||||||||||| || |||| |||||| | | ||||| Sbjct 501032 GCCCAGGTGGCGGAATTGGTAGACGCGCTGGCTTCAGGTGCCAGTGGCTGCAAGGTCGTG 501091 Query 165278 GAGGTTCAAGTCCTCTCTTGGGCAC 165302 |||||| |||||| || ||||||| Sbjct 501092 AAGGTTCGAGTCCTTTCCTGGGCAC 501116 >seq1095 Length=1089284 Score = 82.4 bits (90), Expect = 1e-10 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165226 GTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTCGTGGAGGTTCA 165285 ||||||||||||||||||||||||| ||||||||||||||| || | |||| ||||| Sbjct 879705 GTGGCGGAATTGGTAGACGCGCTGGATTTAGGTTCCAGTGACGAAAGTTGTGGGGGTTCG 879646 Query 165286 AGTCC 165290 ||||| Sbjct 879645 AGTCC 879641 Score = 82.4 bits (90), Expect = 1e-10 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 165226 GTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTCGTGGAGGTTCA 165285 |||||||||||||||||||||||| || |||| |||||| || |||||||||||| Sbjct 1026292 GTGGCGGAATTGGTAGACGCGCTGCCTTGAGGTGGCAGTGATGCAAGTCGTGGAGGTTCG 1026233 Query 165286 AGTCCTCTCTTGGGCACTAT 165305 ||||||||| | |||| || Sbjct 1026232 AGTCCTCTCGAGCGCACCAT 1026213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627956233449600