Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq1291 206 8e-49 seq1494 147 6e-31 seq713 143 8e-30 >seq1291 Length=542012 Score = 206 bits (228), Expect = 8e-49 Identities = 236/311 (76%), Gaps = 6/311 (2%) Strand=Plus/Plus Query 39254 TTCAGCAGGCCGCCGCCGACGCGCTTCGTCGTGTAGAACAGTACGTACGGCTTCGCCGTG 39313 ||| ||| |||||||| |||||||| |||||||||||||| || || ||||| |||| Sbjct 325386 TTCTGCACCCCGCCGCCCACGCGCTTGGTCGTGTAGAACAGCACATAGGGCTTGGCCGAA 325445 Query 39314 TACGGATCGCGCAGCACGCGAACCCCGATGCGGTCGATGATCAGATACGTCTGCTGGAAG 39373 || |||||||||||||| || ||||| ||||| | ||||||||| ||||||| Sbjct 325446 TAGGGATCGCGCAGCACCCGCACCCCCGCCCGGTCCACGATCAGATAGCCGCGCTGGAAA 325505 Query 39374 TCGCCGAAGAGAATCGGCGTCGAGTTCGCCGCCACATCCGGCATGTCCGGCACCTCGGTA 39433 |||||||| |||| | ||| |||||||||||||||||| | | |||||| Sbjct 325506 TCGCCGAACGCGATCGACAGGCTGTTGGCCGCCACATCCGGCATGGTCTCGATCTCGGTG 325565 Query 39434 ACCGGATAGCCCGCCAGCGTCGCCGGCT-GCCCCGCTACGTACGACGGTTGCCAGAGATA 39492 |||||||||||| ||| |||||| || |||| || ||| || ||| ||||||| || Sbjct 325566 ACCGGATAGCCCAGCAGGCTCGCCGTCTCGCCCAGCCGCGT-CGCCGGCTGCCAGATGTA 325624 Query 39493 GTTCCCTTGGCCGTCCTTCAGCTTCCGCAC-CT-GACGCTGCGTGTTGCGGTTCATCGCG 39550 ||| || | ||||||| | ||| ||||| || ||| | ||| |||||||||||| || Sbjct 325625 GTTGCCGTCCGCGTCCTTGAACTTGCGCACGCTGGACAC--CGTCTTGCGGTTCATCACG 325682 Query 39551 AAGCGGGCGTT 39561 || ||| |||| Sbjct 325683 AAACGGCCGTT 325693 >seq1494 Length=1074632 Score = 147 bits (162), Expect = 6e-31 Identities = 238/334 (71%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 39262 GCCGCCGCCGACGCGCTTCGTCGTGTAGAACAGTACGTACGGCTTCGCCGTGTACGGATC 39321 ||||||||||||||||||||||||||||||||| ||||| ||||| || | |||||||| Sbjct 546452 GCCGCCGCCGACGCGCTTCGTCGTGTAGAACAGCACGTAAGGCTTGGCGGAATACGGATC 546511 Query 39322 GCGCAGCACGCGAACCCCGATGCGGTCGATGATCAGATACGTCTGCTGGAAGTCGCCGAA 39381 ||||||||| || || |||| ||||| | ||||||||| | | ||| |||||||| Sbjct 546512 GCGCAGCACCCGCACGCCGAGCCGGTCCACGATCAGATAGCCGCGTTTGAAATCGCCGAA 546571 Query 39382 GAGAATCGGCGTCGAGTTCGCCGCCACATCCGGCATGTCCGGCACCTCGGTAACCGGATA 39441 |||| | ||| ||||| || | |||||||||||| | || | ||| | Sbjct 546572 CGCGATCGACAGCGAATTCGCGGCGATGTCCGGCATGTCCTCGGCTTCCACCAGCGGGAA 546631 Query 39442 GCCCGCCAGCGTCGC-CGGCTGCCCCGCTACGTACGACGGTTGCCAGAGATAGTTCCCTT 39500 | ||||| || |||| |||| || || || ||| ||||| ||||| | | Sbjct 546632 CGTCATCAGCGAGGCGCGGCCGCCCGCCTGCG-CCGGCGGCTGCCACAGATA--TGCGCC 546688 Query 39501 GGCC--GTCCTTCAGCTTCCGCACCTGACGCTGCGTGTTGCGGTTCATCGCGAAGCGGGC 39558 | || |||||| | ||| || | | |||||| |||||||||||| ||||| | | Sbjct 546689 GCCCGTGTCCTTGAACTTGCGGATTGCAGCCTGCGTCTTGCGGTTCATCACGAAGGCGCC 546748 Query 39559 GT--TGCCCGTGAACGCGCTCGGCAGGTCGTAGA 39590 || |||| || ||| ||| | ||| |||||| Sbjct 546749 GTTCTGCCGGT-AACCCGC-CTTCAGCGCGTAGA 546780 >seq713 Length=1192841 Score = 143 bits (158), Expect = 8e-30 Identities = 294/421 (70%), Gaps = 17/421 (4%) Strand=Plus/Minus Query 39217 GCTGGCGGCGACCTTCATC-GCGCGCATCGGCTCCGGATTCAGCAGGCCGCCGCCGACGC 39275 ||| ||||||| ||||||| || | || | || || | ||| |||||| ||||| | Sbjct 1085597 GCTCGCGGCGAACTTCATCAGCTTG-ATGGCGTCGAAATCCTGCACGCCGCCACCGACAC 1085539 Query 39276 GCTTCGTCGTGTAGAACAGTACGTACGGCTTCGCCGTGTACGGATCGCGCAGCACGCGAA 39335 |||| || |||||||||| || || || ||||| | |||||||||||||||||||| | Sbjct 1085538 GCTTGGTGGTGTAGAACAACACATAGGGTTTCGCGGAATACGGATCGCGCAGCACGCGCA 1085479 Query 39336 CCCCGATGCGGTCGATGATCAGATA-CGTCTGCTGGAAGTCGCCGAAGAGAATCGGCGTC 39394 | |||| ||| |||| |||||| || | | || |||| |||||||| |||| | | Sbjct 1085478 CGCCGAGGCGATCGACGATCAGGTAGCCGCGGC-GGAAATCGCCGAACGCGATCGACAGC 1085420 Query 39395 GAGTTCGCCGCCACATCCGGCATGTCCGGCACCTCGGTAACCGGATAGCCCGCCAGCGTC 39454 || || || | ||||||||||||||| | ||||| | | ||| | | ||||| Sbjct 1085419 GAATTGGCGCCGACATCCGGCATGTCCTCCGCCTCGATCAGCGGGAACGTCATCAGCGAG 1085360 Query 39455 GC-CGGCTGCCCCGCTACGTACGACGGTTGCCAGAGATAGTTCCCTTGGCCG---TCCTT 39510 || |||| ||| || || || ||| ||||| ||||| | | |||| ||||| Sbjct 1085359 GCACGGCCGCCTGCCTGCG-CCGGCGGCTGCCACAGATA---CGCGCCGCCGGTATCCTT 1085304 Query 39511 CAGCTTCCGCACCTGACG-CTGCGTGTTGCGGTTCATCGCGAAGCGGGCGTTGCCCGTGA 39569 | ||| || | | | || ||| || ||||| |||||| |||| | |||| | | || Sbjct 1085303 GAACTTGCGGATC-GTCGCCTGTGTCTTGCGATTCATCACGAACACGCCGTT-CTGGCGA 1085246 Query 39570 ACGCGC-TCGGCAGGTCGTAGACCAGATCGATGATGCCGTCCGACGTGATGTCTGCCGCC 39628 || | | ||| |||||| |||||||| | |||| |||| ||| |||||| | Sbjct 1085245 TAGCCCGCCTTCAGCGCGTAGATCAGATCGACCAGCGCGTCGGACG-GATTGCTGCCGGC 1085187 Query 39629 G 39629 | Sbjct 1085186 G 1085186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143415047077084