Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq1291 232 2e-56 seq1095 131 5e-26 seq811 113 1e-20 seq998 95.1 4e-15 >seq1291 Length=542012 Score = 232 bits (256), Expect = 2e-56 Identities = 302/415 (73%), Gaps = 21/415 (5%) Strand=Plus/Minus Query 42706 GGTCTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGT 42765 ||||||||| | | | |||||| |||| ||||||||| ||| || |||||||||| Sbjct 388458 GGTCTCGCCCGCAACGGTCGGCACGCCGACGCAGTTGCCATAGCCGCCGATGCCGCTGAC 388399 Query 42766 GACGCCGTGCACGACCCGC---GCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGC 42822 |||||| || || | || | | | ||| | || ||| ||||||| |||||||| Sbjct 388398 GACGCCCTGGACCAGGCGTTTGGTCTTCTCGTG--CGACGGAT-CGCCGAAACGCAGGGC 388342 Query 42823 GTCCATGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCAC 42882 || || | || |||||||| |||||||| | || || |||||| | |||||||||||| Sbjct 388341 GTTCAGCAGGGCCACCGGGCGCGCGCCCATTGTGAAGACGTCGCGCATGATGCCGCCCAC 388282 Query 42883 ACCCGTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTT 42942 ||||||||||| ||||| ||||||||||| | |||||||||||||| |||||| ||| Sbjct 388281 GCCCGTCGCCGCACCCTGATAGGGCTCGATGTAGGAGGGGTGGTTGTGGCTCTCCATCTT 388222 Query 42943 GAACGTGACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCTGCCCCATCCCGAC 43002 ||| || || || ||| ||| |||||| ||||| ||||||| ||| ||| Sbjct 388221 GAAGATGCAGGCGTCGCCGTCGTCGATGTCGATCACGCCTGCGTTCTCGCCCGGACCGCA 388162 Query 43003 CATGAGGCGCTCGCGCATCTCGTCCGAGACCTTCTGCCCGAACCTCTTGAGGTAGAGCTT 43062 |||| |||||||| | | || || || ||||| |||| || ||| Sbjct 388161 GATGACGCGCTCGCCGGT---GGTCGGGAACT--TGCCC----------AGGTGGATCTT 388117 Query 43063 GCTCGACTTGTAGGAGCAGTGCTCCGACCACATCACCGAGTACATCGCCAGCTCG 43117 | |||||||||||||||||||| |||||||| |||||| | | |||||||| Sbjct 388116 GGAGGACTTGTAGGAGCAGTGCTCGGACCACATGACCGAGAAGACGCCCAGCTCG 388062 >seq1095 Length=1089284 Score = 131 bits (144), Expect = 5e-26 Identities = 231/337 (69%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 42653 CCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGTCTCG 42712 |||||||||| ||||||||| || ||| | | |||| || | ||| ||| Sbjct 844922 CCCACCGCCATGGCGTTGACGAGGATGTTGCCGTCATAGCGGGTGTGGAAGCGCATCTGC 844981 Query 42713 CCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGCCG 42772 ||||| | |||||| |||| | ||||||||| | || ||| ||||| Sbjct 844982 CCGCCCACCGTCGGCACCCCGAACGAATTGCCGTAGCCACCGACGCCCGCCACCACGCCC 845041 Query 42773 TGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCATGACC 42832 ||| | || ||| | || | || | ||||||||||| || || | | | Sbjct 845042 GACACCAGATGCCGCGTCTTCGGATGCTCCGGCGCGCCGAAGCTCAATGCATTAAGGCAG 845101 Query 42833 GCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGTCGCC 42892 |||| ||| || |||||||||| || || |||||| | ||||||||| || || || | | Sbjct 845102 GCGATCGGCCGCGCGCCCATGGTGAAGACGTCGCGCAGGATGCCGCCGACGCCGGTGGTC 845161 Query 42893 GCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGTGACC 42952 |||||||| ||||||||||||| || |||||||| || ||| |||||| || Sbjct 845162 GCGCCCTGATAGGGCTCGATGAAACTCGGATGGTTGTGGCTTTCCATCTTGAAGACGATG 845221 Query 42953 GCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCT 42989 ||| || ||||||| ||||||||||| ||||||| Sbjct 845222 GCCTGCCCGTCGCCGATATCGATGACGCCGGCGTTCT 845258 >seq811 Length=194255 Score = 113 bits (124), Expect = 1e-20 Identities = 136/183 (74%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 42807 CGCCGAAGCGCAGGGCGTCCATGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGC 42866 |||| ||||| || || | ||| ||||||| || || |||||||||| || | ||||| Sbjct 17419 CGCCAAAGCGGAGCGCATTCATTGCCGCGACGGGACGCGCGCCCATGGTGAACACGTCGC 17360 Query 42867 GGACGATGCCGCCCACACCCGTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGT 42926 | | |||||||| || || ||||| || ||||| ||||||||||| | || || |||| Sbjct 17359 GCAAAATGCCGCCAACGCCGGTCGCTGCACCCTGATAGGGCTCGATGTAGGACGGATGGT 17300 Query 42927 TGTGACTCTCCGCCTTGAACGTGACCGCCCAT--CCCTCGCCGACGTCGATGACGCCCGC 42984 |||| || ||| |||||| ||| | || || ||||||| ||| | ||||| || Sbjct 17299 TGTGGCTTTCCATCTTGAAGACGAC--GCAATCGCCATCGCCGATGTCTACCACGCCTGC 17242 Query 42985 GTT 42987 ||| Sbjct 17241 GTT 17239 >seq998 Length=1052685 Score = 95.1 bits (104), Expect = 4e-15 Identities = 119/162 (73%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 42839 GGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGTCGCCGCGCCC 42898 || || |||||||| | || | |||||| | ||||||||| || || || | ||||||| Sbjct 158324 GGCCGCGCGCCCATCGTGAACACGTCGCGCAGGATGCCGCCGACGCCGGTGGTCGCGCCC 158265 Query 42899 TGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGTGACCGCCCAT 42958 || | ||||||||| | ||||||||||| |||||| |||||| || || Sbjct 158264 TGATACGGCTCGATGTAGCTCGGGTGGTTGTGGCTCTCCATCTTGAAGACCACGGCGAGG 158205 Query 42959 CCCTCGCCGACGTCGATGACGCCCGCGTTCT-GCCCCATCCC 42999 || || |||| ||||| ||||| ||||||| |||| |||| Sbjct 158204 CCATCACCGATATCGATCACGCCGGCGTTCTCGCCCGGTCCC 158163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148243761121426