Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_009603.1
Length=46365
Score E
Sequences producing significant alignments: (Bits) Value
seq1291 232 2e-56
seq1095 131 5e-26
seq811 113 1e-20
seq998 95.1 4e-15
>seq1291
Length=542012
Score = 232 bits (256), Expect = 2e-56
Identities = 302/415 (73%), Gaps = 21/415 (5%)
Strand=Plus/Minus
Query 42706 GGTCTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGT 42765
||||||||| | | | |||||| |||| ||||||||| ||| || ||||||||||
Sbjct 388458 GGTCTCGCCCGCAACGGTCGGCACGCCGACGCAGTTGCCATAGCCGCCGATGCCGCTGAC 388399
Query 42766 GACGCCGTGCACGACCCGC---GCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGC 42822
|||||| || || | || | | | ||| | || ||| ||||||| ||||||||
Sbjct 388398 GACGCCCTGGACCAGGCGTTTGGTCTTCTCGTG--CGACGGAT-CGCCGAAACGCAGGGC 388342
Query 42823 GTCCATGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCAC 42882
|| || | || |||||||| |||||||| | || || |||||| | ||||||||||||
Sbjct 388341 GTTCAGCAGGGCCACCGGGCGCGCGCCCATTGTGAAGACGTCGCGCATGATGCCGCCCAC 388282
Query 42883 ACCCGTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTT 42942
||||||||||| ||||| ||||||||||| | |||||||||||||| |||||| |||
Sbjct 388281 GCCCGTCGCCGCACCCTGATAGGGCTCGATGTAGGAGGGGTGGTTGTGGCTCTCCATCTT 388222
Query 42943 GAACGTGACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCTGCCCCATCCCGAC 43002
||| || || || ||| ||| |||||| ||||| ||||||| ||| |||
Sbjct 388221 GAAGATGCAGGCGTCGCCGTCGTCGATGTCGATCACGCCTGCGTTCTCGCCCGGACCGCA 388162
Query 43003 CATGAGGCGCTCGCGCATCTCGTCCGAGACCTTCTGCCCGAACCTCTTGAGGTAGAGCTT 43062
|||| |||||||| | | || || || ||||| |||| || |||
Sbjct 388161 GATGACGCGCTCGCCGGT---GGTCGGGAACT--TGCCC----------AGGTGGATCTT 388117
Query 43063 GCTCGACTTGTAGGAGCAGTGCTCCGACCACATCACCGAGTACATCGCCAGCTCG 43117
| |||||||||||||||||||| |||||||| |||||| | | ||||||||
Sbjct 388116 GGAGGACTTGTAGGAGCAGTGCTCGGACCACATGACCGAGAAGACGCCCAGCTCG 388062
>seq1095
Length=1089284
Score = 131 bits (144), Expect = 5e-26
Identities = 231/337 (69%), Gaps = 0/337 (0%)
Strand=Plus/Plus
Query 42653 CCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGTCTCG 42712
|||||||||| ||||||||| || ||| | | |||| || | ||| |||
Sbjct 844922 CCCACCGCCATGGCGTTGACGAGGATGTTGCCGTCATAGCGGGTGTGGAAGCGCATCTGC 844981
Query 42713 CCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGCCG 42772
||||| | |||||| |||| | ||||||||| | || ||| |||||
Sbjct 844982 CCGCCCACCGTCGGCACCCCGAACGAATTGCCGTAGCCACCGACGCCCGCCACCACGCCC 845041
Query 42773 TGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCATGACC 42832
||| | || ||| | || | || | ||||||||||| || || | | |
Sbjct 845042 GACACCAGATGCCGCGTCTTCGGATGCTCCGGCGCGCCGAAGCTCAATGCATTAAGGCAG 845101
Query 42833 GCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGTCGCC 42892
|||| ||| || |||||||||| || || |||||| | ||||||||| || || || | |
Sbjct 845102 GCGATCGGCCGCGCGCCCATGGTGAAGACGTCGCGCAGGATGCCGCCGACGCCGGTGGTC 845161
Query 42893 GCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGTGACC 42952
|||||||| ||||||||||||| || |||||||| || ||| |||||| ||
Sbjct 845162 GCGCCCTGATAGGGCTCGATGAAACTCGGATGGTTGTGGCTTTCCATCTTGAAGACGATG 845221
Query 42953 GCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCT 42989
||| || ||||||| ||||||||||| |||||||
Sbjct 845222 GCCTGCCCGTCGCCGATATCGATGACGCCGGCGTTCT 845258
>seq811
Length=194255
Score = 113 bits (124), Expect = 1e-20
Identities = 136/183 (74%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 42807 CGCCGAAGCGCAGGGCGTCCATGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGC 42866
|||| ||||| || || | ||| ||||||| || || |||||||||| || | |||||
Sbjct 17419 CGCCAAAGCGGAGCGCATTCATTGCCGCGACGGGACGCGCGCCCATGGTGAACACGTCGC 17360
Query 42867 GGACGATGCCGCCCACACCCGTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGT 42926
| | |||||||| || || ||||| || ||||| ||||||||||| | || || ||||
Sbjct 17359 GCAAAATGCCGCCAACGCCGGTCGCTGCACCCTGATAGGGCTCGATGTAGGACGGATGGT 17300
Query 42927 TGTGACTCTCCGCCTTGAACGTGACCGCCCAT--CCCTCGCCGACGTCGATGACGCCCGC 42984
|||| || ||| |||||| ||| | || || ||||||| ||| | ||||| ||
Sbjct 17299 TGTGGCTTTCCATCTTGAAGACGAC--GCAATCGCCATCGCCGATGTCTACCACGCCTGC 17242
Query 42985 GTT 42987
|||
Sbjct 17241 GTT 17239
>seq998
Length=1052685
Score = 95.1 bits (104), Expect = 4e-15
Identities = 119/162 (73%), Gaps = 1/162 (1%)
Strand=Plus/Minus
Query 42839 GGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGTCGCCGCGCCC 42898
|| || |||||||| | || | |||||| | ||||||||| || || || | |||||||
Sbjct 158324 GGCCGCGCGCCCATCGTGAACACGTCGCGCAGGATGCCGCCGACGCCGGTGGTCGCGCCC 158265
Query 42899 TGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGTGACCGCCCAT 42958
|| | ||||||||| | ||||||||||| |||||| |||||| || ||
Sbjct 158264 TGATACGGCTCGATGTAGCTCGGGTGGTTGTGGCTCTCCATCTTGAAGACCACGGCGAGG 158205
Query 42959 CCCTCGCCGACGTCGATGACGCCCGCGTTCT-GCCCCATCCC 42999
|| || |||| ||||| ||||| ||||||| |||| ||||
Sbjct 158204 CCATCACCGATATCGATCACGCCGGCGTTCTCGCCCGGTCCC 158163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148243761121426
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |