Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq712 179 2e-40 seq513 89.7 2e-13 >seq712 Length=321952 Score = 179 bits (198), Expect = 2e-40 Identities = 451/670 (67%), Gaps = 14/670 (2%) Strand=Plus/Plus Query 59889 GGATTGCCTCGGTTAGCTGCATCATCGAACATAAGGTAAGGATAGCCAGACTCAAACTGA 59948 |||||| | ||||| | | || |||||||| | || ||||| || ||||| ||||| Sbjct 145048 GGATTGGCGCGGTTCACCGTGTCCTCGAACATGATATAGGGATAACCGGACTCGAACTGG 145107 Query 59949 ACCTCTGCGATGGTCTGGAACAGCTTTCGAGCGTCGATAAAGGTCTTAGCGATCCTATCA 60008 | || || | ||| || | || || || | ||| |||| | || | || Sbjct 145108 ATTTCCGCCAGCACCTGAAAGAACTCGCGTGCATTGATCTTCTTCTTGGTAATGCGCGCA 145167 Query 60009 TCTTTTAGCCACGTGTCG-TACATCTCGGTTACGGAGAACTCGGACAGTGACTTTCCGTA 60067 || | | ||| | || || | ||||| | || | ||||| ||||| | ||||| Sbjct 145168 TCATCGA-CCAATTCCCGATATTTTTCGGTGATCGAAATCTCGGTCAGTGGCACACCGTA 145226 Query 60068 CACCTTATTGATGTCATAAGGAGAGAATAGGGCCATAGGCTCGCTCTCCTTGGCAAGGCG 60127 ||| | | ||||||||| ||||| ||| |||| |||| | | ||| || || Sbjct 145227 GACCCGCTCCACGTCATAAGGCGAGAAGAGGTACATATCCTCGTTGTTCTTCGCGAGTTC 145286 Query 60128 GAACGTGACATCAGGAACGATAACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTC 60187 ||| || | || |||| || || || || || | || || || ||||| |||||||| Sbjct 145287 GAAGGTAATGTCTGGAATGACCACACCAAGCGACAAGGTTTTGATGCGGATTTTCTCGTC 145346 Query 60188 GGCGTTTTCACGCTTGGTATCCAG-GAACGCAAGGATGTCGGGGTGGTGTGCGTTCAAAT 60246 |||||||||||||| || || || ||||| | ||| || || || ||||| | || || Sbjct 145347 CGCGTTTTCACGCTTCGTGTCGAGAAAACGC-ATGATATCCGGATGATGTGCATGCAGAT 145405 Query 60247 ATACCGCCCCTGCGCCCTGCCTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTA 60306 | || || || || || || | || || || || || | |||||| ||| ||| || | Sbjct 145406 AGACAGCGCCCGCACCTTGTCGCGCGCCAAGCTGATTGGCGTAGGAAAAGGAATCCTCAA 145465 Query 60307 GAATCTTCATCACAGGGATGACTCCAGAGGCCTGACCTTCTCGACC--CTTAATCGGAGC 60364 ||| ||||||||| || |||| || || | ||| |||| || | ||| || || || Sbjct 145466 GAAGCTTCATCACCGGAATGATGCCGGATGACTG--GTTCTGGATCTGCTTGATGGGCGC 145523 Query 60365 TCCTGCCTCGCGGAGGTTGGAGAATC-CAATGCCGACTCCGCCACCACGCTTAGACAGCT 60423 || |||||||||| |||| || | || ||| || ||||| || ||||| |||| | Sbjct 145524 GCCCGCCTCGCGGATATTGGTGAGGCTCAGCGCC-ACGCCGCCGCCCCGCTTCGACAATT 145582 Query 60424 GGAGAG-AGTCCTGAACGATTCGACCGATGGACCCCATGGTGTCCTGAACATCGAGGATG 60482 | |||| | ||| || || ||||||||| |||| |||||| ||| || | Sbjct 145583 GCAGAGCCGAATTGATGGA-GCGTCCGATGGACTCCATATTGTCCTCAACCCGCAGCAGA 145641 Query 60483 AAGCATGATACTGGCTTGCCTGCG-TCGAGAAGCCCCGCGTTGAGGAAGGTCGGAGTTGC 60541 ||||| || || | | ||| ||| | ||||| |||||||| || || || || Sbjct 145642 AAGCAGGAAACAAGTTCGCC-GCGCTGTTTTTTTCCCGCATTGAGGAATGTAGGCGTCGC 145700 Query 60542 AGGCTGGAAG 60551 ||||||| || Sbjct 145701 AGGCTGGTAG 145710 Score = 143 bits (158), Expect = 1e-29 Identities = 280/409 (68%), Gaps = 6/409 (1%) Strand=Plus/Plus Query 58398 GCGCAGCTTAGGCAACCTTCCACTTCCGTGCCTTCTACCGACTTA--GCAGAGGTTCGGA 58455 |||||| | |||||| | |||||||||||| | || | | || ||| || | Sbjct 144040 GCGCAGGAAACGCAACCCTGCACTTCCGTGCCGGAGAGCGCCATCTGGCGCAGG--CGAA 144097 Query 58456 TGTAGTACAGAGACTTCAGGCCCTTCTTGTGAGCGTAGATCTGCGCTCGGTTAATGTCTC 58515 ||||||| | | ||| | ||||||||| ||||||||||| || ||||| || || | Sbjct 144098 TGTAGTAGATGGTCTTGATGCCCTTCTTCCACGCGTAGATCTGTGCGCGGTTGATATCGC 144157 Query 58516 GCGTTGTCGCTGTATCTGGGAAGAACAGCGTGAGAGACATGCCCTGGTCTACCCAAGGAG 58575 | || || || ||||| ||||||||| || ||||||| |||||| || || | | Sbjct 144158 GTGTCGTTGCGGTATCGCGGAAGAACAATGTCAGAGACAGGCCCTGATCGACGTGCTGCG 144217 Query 58576 ATGCTACAGCGTACATATCAATGATCGGGTTAGGTCCGATAGCGTAAGCGCTATCAATTG 58635 || | ||||| | || |||||| | || ||||| | || ||| | | Sbjct 144218 TCGCCGCCGCGTAAGTGTCGATGATCTTTTCCGGCCCGATCTCATAGGCGTCCTGATAGT 144277 Query 58636 ATTCTACATTCTCATTGGTCACTCCGTACTG-AGGGTAATAGACTCGACCAAGCTTACCC 58694 | || | ||| |||||||||| | ||| || || ||||| ||||| | ||| ||| Sbjct 144278 AATCGAGATTGTCATTGGTCA-TGAACGCTGCCGGATAGTAGACGCGACCGATCTTGCCC 144336 Query 58695 TCCTTGCGAACCTCAACAGGAGAGGTCACAGGGTGAATCGAGGCCGTGGCATGGTTAATG 58754 |||||||| | ||||| || | || || ||||| | ||| | |||||| ||| Sbjct 144337 TCCTTGCGGATCTCAATCTTCGACACGATCGGATGGATCGATGACGTCGAATGGTTGATG 144396 Query 58755 TACGAGATAGAGCCGGTTGGTGGGATCGCCTGGAGGTTCTGGTTGTAAA 58803 || ||||| ||||| || || || | ||||| ||||||||||| |||| Sbjct 144397 TAGGAGATCGAGCCTGTCGGCGGCACGGCCTGAAGGTTCTGGTTATAAA 144445 Score = 95.1 bits (104), Expect = 5e-15 Identities = 113/148 (76%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 57382 CTGGAATTTATATCCCAAGTAATAGCCATGCACACCCTCGTCTCTCATGATAAGGCGGAT 57441 ||||||||| || || | |||||||||||||||| |||| || | ||||| || ||||| Sbjct 143378 CTGGAATTTGTAACCGATGTAATAGCCATGCACAGCCTCATCACGGATGATGAGCCGGAT 143437 Query 57442 AAGGTCCGCTGTGTTGGTGAG-TTTACCTTGAGAGGCGAAGTGAAGAGGGAGATAGAAGC 57500 ||| || ||||| ||||| || ||| || | | | ||| | || |||||||||| Sbjct 143438 AAGATCGGCTGTATTGGTCAGCTTTGCCCGGCTCGAC-CAGTACATGGGCAGATAGAAGC 143496 Query 57501 CGGTATAGAACAAGAATGAT-TCCAGGA 57527 ||| ||||||| |||| | | ||||||| Sbjct 143497 CGGAATAGAAC-AGAAAGCTCTCCAGGA 143523 >seq513 Length=6546 Score = 89.7 bits (98), Expect = 2e-13 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 60129 AACGTGACATCAGGAACGATAACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCG 60188 || || | |||||||| | ||||||| || | | |||||||| || || || || Sbjct 1169 AAAGTAATATCAGGAATAACTACTCCTAAAGACATTGATTTAATACGAATTTTTTCATCT 1228 Query 60189 GCGTTTTCACGCTTGGTATCCAGGAACGCAAGGATGTCGGGGTGGTGTGCGTTCAAATAT 60248 || ||||||||||| | ||| | || | || || || || || | || ||||| Sbjct 1229 GCATTTTCACGCTTTGAATCTAAAAATAACATAATATCTGGATGATGAACATTTAAATAA 1288 Query 60249 ACCGCCCCTGCGCCCTGCCTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGA 60308 || ||||| || || || ||| ||| ||||| |||| || || || |||||| ||| Sbjct 1289 ACTGCCCCAGCACCTTGTCTTTGACCTAGTTGATTAGCATATGAAAATGAATCTTCAAGA 1348 Query 60309 ATCTTCATCACAGGGATGACTCCAGAGGCCTGACCTTCTCGACCCTTAATCGGAGCTCC 60367 || ||||| || ||||| || || | || ||| || | ||||| |||||||| Sbjct 1349 ATTTTCATAACTGGGATAACGCCTGTTGCTTGATTTTTAATATTTTTAATTGGAGCTCC 1407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225723876161060