Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_009904.1 Length=142072 Score E Sequences producing significant alignments: (Bits) Value seq513 118 1e-21 >seq513 Length=6546 Score = 118 bits (130), Expect = 1e-21 Identities = 284/425 (67%), Gaps = 10/425 (2%) Strand=Plus/Plus Query 133033 TATCGGGAACAACTACTCCCAAAGAAAGTGTTTTGATTTGCTTTGCGGATTCTGCATTTT 133092 |||| |||| ||||||||| ||||| | || ||| || | || |||||||||| Sbjct 1176 TATCAGGAATAACTACTCCTAAAGACATTGATTTAATACGAATTTTTTCATCTGCATTTT 1235 Query 133093 CTTTTCTAGTTGA---TAAAAAGTCCATAATATCCGCATGGAAAACATTTAGATAGACTG 133149 | || |||| |||||| ||||||||| | ||| |||||||| ||| |||| Sbjct 1236 CACG-CT--TTGAATCTAAAAATAACATAATATCTGGATGATGAACATTTAAATAAACTG 1292 Query 133150 CGCCTGCACCTTGTCTTTGCCCTAATTGATTTGCGTACCGGAAACCATCTTCTAGCATTT 133209 | || |||||||||||||| |||| |||||| || || || |||||| || |||| Sbjct 1293 CCCCAGCACCTTGTCTTTGACCTAGTTGATTAGCATATGAAAATGAATCTTCAAGAATTT 1352 Query 133210 TCATAACAGGGACGACACCACTACCTGCCCCCTCAATTCCCTTAATAGGGTCACCAAGAG 133269 ||||||| |||| || || | || | ||| ||||| || | |||| Sbjct 1353 TCATAACTGGGATAACGCCTGTTGCTTGATTTTTAATATTTTTAATTGGAGCTCCAAATT 1412 Query 133270 CTCTTAAGTTTGAAAGATTTATGCCGACTCCTCCGCCAAGTTTAGATAGTTGAAGTGCAC 133329 ||||||| |||| | | | | ||||| |||||| |||| |||| || | || | Sbjct 1413 CTCTTAAATTTGTTAAACACAAAGCAACTCCACCGCCACGTTTTGATAACTGTAATGAAG 1472 Query 133330 TGTTCAACGTTCTACCAATTGAAGACATTGAATCTTCTACTTGAATTAGAAAACAGCTGA 133389 | | | | | | ||||||| ||| |||||| | | | | ||| |||| ||| Sbjct 1473 TAGTAATAGCGCGAGCAATTGATTCCATGTTATCTTCAATTCGTAAAAGATAACA--TGA 1530 Query 133390 --CATACTCCCCTCTTCTAAGTCTACCTGCATTTAAAAAAGTAGGGGTTGCAGGTTGGTA 133447 || || |||||| | | |||||||||||||| || || || || ||||| | Sbjct 1531 AGTGTATTCACCTCTTTGTTTTTTTCCTGCATTTAAAAATGTGGGAGTAGCTGGTTGAAA 1590 Query 133448 TCTAC 133452 ||||| Sbjct 1591 TCTAC 1595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454493883761280