Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq773 100 3e-16 seq724 96.9 4e-15 >seq773 Length=230076 Score = 100 bits (110), Expect = 3e-16 Identities = 241/358 (67%), Gaps = 14/358 (4%) Strand=Plus/Minus Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCA 10891 ||||| ||||||||||| | | ||| || ||||| ||||| || |||||||| Sbjct 177172 CGGTTGGTCGCCGCGATCAGGATGAT---CGATTCGTTGGCTTCAAAACCGTCCATCTCG 177116 Query 10892 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGGGC-ATACCACCCGCA 10948 || || || |||| ||| ||||||||||| ||||| ||| | | | |||| || Sbjct 177115 ACCAGCAGCTGGTTGAGGGTCTGTTCGCGTTCGTCATTACCGCCGCCGAGACCA---GCG 177059 Query 10949 CTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCA 11008 | ||| || ||||||||| || ||||| |||||||| | ||| || || ||| | Sbjct 177058 CCGCGATGACGACCGACGGCATCGATTTCGTCGATGAAGATGATGCAAGGCGCATTCTTC 176999 Query 11009 CGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACA 11068 ||| ||| || || || ||||| | | || ||||| || || |||||||| || Sbjct 176998 TTGGCCTGTTCGAACATGTCACGGACACGGCTCGCGCCGACGCCGACGAACATTTCAACG 176939 Query 11069 AAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGC 11127 || | | ||||| || | || ||| || || || | ||| || || | | || || Sbjct 176938 AAGTCCGAACCGGAA-ATGGTGAAGAACGGCACATTCGCTTCGCCTGCAACAGAGCGCGC 176880 Query 11128 GAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTG 11185 || || ||||| || || || || || |||| || | ||||| || ||| || Sbjct 176879 CAGAAGCGTCTTACCGGTGCCGGGAGGGCCCACGAGCAGCACGCCACGCGGAATCTTG 176822 >seq724 Length=279373 Score = 96.9 bits (106), Expect = 4e-15 Identities = 331/508 (65%), Gaps = 26/508 (5%) Strand=Plus/Minus Query 10780 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 10839 || || ||| || || || || || || || ||||| ||| || | || |||||| Sbjct 7146 GACCTGACGGTCGAAACGGCCGGGACGCAGCAGGGCCGGGTCCAGCACGTCGGGGCGGTT 7087 Query 10840 CGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAA 10896 || || ||||| | | |||| ||||| || |||||||||||||| || Sbjct 7086 GGTGGCGGCGATCAGGATGATGT---TCTCGGAGGCTTCGAAGCCATCCATCTCGACCAG 7030 Query 10897 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGT 10954 || || || | ||| || ||||| || || || || | ||| || || | ||| Sbjct 7029 CAGCTGGTTCAGGGTCTGCTCGCGCTCGTCGTTGCCG--CCGCCCAGGCCTGCGCCGCGA 6972 Query 10955 TGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGG----TTGATTTTCACG 11010 || ||||||||||| |||||||||||||| | ||| ||||| || ||||| Sbjct 6971 TGACGGCCGACGGCGTCGATTTCATCGATGAAGATGATGCACGGAGCATTCTTTTTC--- 6915 Query 11011 GGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 || ||| || || || ||||| | |||| ||||| || || |||||||| || || Sbjct 6914 -GCTTGTTCGAACATGTCGCGGACGCGGCTGGCGCCGACGCCGACGAACATTTCGACGAA 6856 Query 11071 ATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGA 11129 | | | | | || | || |||||| ||| | |||||||||| || ||||| | Sbjct 6855 GTCCGAACCCG-AGATCGAGAAGAAGGGCACGCCCGCCTCACCCGCGACCGCGCGGGCCA 6797 Query 11130 GGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCAC 11189 | || ||||| || || || || || | || ||||| || |||||| || | | Sbjct 6796 GCAGCGTCTTGCCGGTGCCGGGAGGGCCGACCAGCAGGGCGCCCTTGGGGATCTTGCCGC 6737 Query 11190 C---ACTTCCAAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCAT 11246 | || || | || | || | || |||||||| |||| || | || ||| | Sbjct 6736 CCAGACGCTGGAACTTGC---CCGGATCCTTCAGGAAGTCGACGACCTCCTGCAGTTCGT 6680 Query 11247 CCTTCGCAGCGTCGATGCCTTCAACGTC 11274 |||| || | |||| |||| | || || Sbjct 6679 CCTTGGCCTCATCGACGCCTGCGACATC 6652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597342407086920