Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_010355.1 Length=62337 Score E Sequences producing significant alignments: (Bits) Value seq713 122 3e-23 seq1291 118 4e-22 seq1494 100 1e-16 seq900 86.0 2e-12 >seq713 Length=1192841 Score = 122 bits (134), Expect = 3e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22422 AGGCTGCGGACATGCCGGCGGTTGGCGCGGGCGCCCTGCCCATCGCCTTCGGCAACTTCC 22481 |||| | ||||||||||| || ||||| | ||| | ||||| |||||| | |||| Sbjct 1085386 AGGCGGAGGACATGCCGGATGTCGGCGCCAATTCGCTGTCGATCGCGTTCGGCGATTTCC 1085445 Query 22482 GCGCCGGCTACACCGTCGTGGATCGCCTGGGCATCACCGTCCTGCGCGACCCCTACTCGG 22541 || ||||||| |||| |||||||| ||| | ||| |||||||| || || || | Sbjct 1085446 GCCGCGGCTACCTGATCGTCGATCGCCTCGGCGTGCGCGTGCTGCGCGATCCGTATTCCG 1085505 Query 22542 CCAAGCCCTTCGTGGAGTTCTACAGCCGGAAGCGCGTCGGCGGCGACGTGGTGAACTTCG 22601 | || |||| ||| |||||||| | ||||| ||||| |||| |||| | | |||| Sbjct 1085506 CGAAACCCTATGTGTTGTTCTACACCACCAAGCGTGTCGGTGGCGGCGTGCAGGATTTCG 1085565 Query 22602 AAGCCTTCAAGCTGATG 22618 | ||| ||||||||||| Sbjct 1085566 ACGCCATCAAGCTGATG 1085582 >seq1291 Length=542012 Score = 118 bits (130), Expect = 4e-22 Identities = 198/281 (70%), Gaps = 4/281 (1%) Strand=Plus/Minus Query 22340 AAGGACGGCGACGGCCAGTACATCTGGCGTCCGGGCCTGGAGGCTGG-CAAGCCGTCCAC 22398 ||||||| |||||| | |||||||||| |||| | | |||||| | || || | | Sbjct 325642 AAGGACGCGGACGGCAACTACATCTGGCAGCCGG-CGACGCGGCTGGGCGAGACGGCGAG 325584 Query 22399 CCTGCTCGGCTCCCCGGTCTATCAGGCTGCGGACATGCCGGCGGTTGGCGCGGGCGCCCT 22458 |||||| |||| |||||| || | | |||||||| || | || | ||| Sbjct 325583 CCTGCTGGGCTATCCGGTCACCGAGATCGAGACCATGCCGGATGTGGCGGCCAACAGCCT 325524 Query 22459 GCCCATCGCCTTCGGCAACTTCC-GCGCCGGCTACACCGTCGTGGATCGCCTGGGCATCA 22517 | | ||||| |||||| | |||| |||| ||||| ||||||| || ||| | Sbjct 325523 GTCGATCGCGTTCGGCGATTTCCAGCGC-GGCTATCTGATCGTGGACCGGGCGGGGGTGC 325465 Query 22518 CCGTCCTGCGCGACCCCTACTCGGCCAAGCCCTTCGTGGAGTTCTACAGCCGGAAGCGCG 22577 || |||||||| ||||| ||||||||||||| ||| |||||||| ||||||| Sbjct 325464 GGGTGCTGCGCGATCCCTATTCGGCCAAGCCCTATGTGCTGTTCTACACGACCAAGCGCG 325405 Query 22578 TCGGCGGCGACGTGGTGAACTTCGAAGCCTTCAAGCTGATG 22618 | ||||||| ||| |||||| || ||| ||||| ||||| Sbjct 325404 TGGGCGGCGGGGTGCAGAACTTTGACGCCATCAAGGTGATG 325364 >seq1494 Length=1074632 Score = 100 bits (110), Expect = 1e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22429 GGACATGCCGGCGGTTGGCGCGGGCGCCCTGCCCATCGCCTTCGGCAACTTCCGCGCCGG 22488 ||||||||||| | | |||| | ||| | ||||| |||||| | ||| ||| Sbjct 546611 GGACATGCCGGACATCGCCGCGAATTCGCTGTCGATCGCGTTCGGCGATTTCAAACGCGG 546552 Query 22489 CTACACCGTCGTGGATCGCCTGGGCATCACCGTCCTGCGCGACCCCTACTCGGCCAAGCC 22548 ||| ||||||| || || ||| | || |||||||| || || || |||||||| Sbjct 546551 CTATCTGATCGTGGACCGGCTCGGCGTGCGGGTGCTGCGCGATCCGTATTCCGCCAAGCC 546492 Query 22549 CTTCGTGGAGTTCTACAGCCGGAAGCGCGTCGGCGGCGACGTGGTGAACTTCGAAGCCTT 22608 | |||| |||||||| ||||||||||||||||| ||| | ||||||| ||| | Sbjct 546491 TTACGTGCTGTTCTACACGACGAAGCGCGTCGGCGGCGGCGTTCAGGACTTCGACGCCAT 546432 Query 22609 CAAGCTGATG 22618 ||||||| || Sbjct 546431 CAAGCTGGTG 546422 >seq900 Length=120344 Score = 86.0 bits (94), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 6520 GACATCAAGGAAGTCTACTCGGAAGCCAAGGGCACCGGGTTCGACGTCAAGATCATTCGG 6579 ||||| ||||| |||| | | || ||||||||| || | |||||||||||| |||| Sbjct 63188 GACATGAAGGAGGTCTTCGCCGAGGCCAAGGGCGAGGGCTATGACGTCAAGATCCTTCGC 63129 Query 6580 CAGATCATCCGCTTGCGGAAGATGGACAAGGCCGACCGGCAGGAACAGCGCGCCATCCTC 6639 || || | ||| | || ||| |||||||||| | || |||||| || ||||||||| Sbjct 63128 AAGGTCCTGCGCATCCGCAAGCAGGACAAGGCCAAGCGTCAGGAAGAGGACGCCATCCTG 63069 Query 6640 GA 6641 || Sbjct 63068 GA 63067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199349957996622