Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_010811.2
Length=231255
Score E
Sequences producing significant alignments: (Bits) Value
seq752 197 2e-45
seq827 91.5 2e-13
seq854 84.2 3e-11
>seq752
Length=262051
Score = 197 bits (218), Expect = 2e-45
Identities = 484/720 (67%), Gaps = 18/720 (3%)
Strand=Plus/Plus
Query 41381 CAGCTTGGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGCAA 41440
|| || ||||| ||||| |||||||||||||||| || |||||| | || || ||
Sbjct 251929 CATCTGGGCACCCTGGGCACCGGCAACCACTTCATCGAGCTGTGCCTTGATGAGGCGGGC 251988
Query 41441 GACGTGTGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTCAC 41500
|| || ||| | |||||||| ||||||||||||||| ||||| | ||||| |
Sbjct 251989 GATGTCTGGGTGATGCTGCACTCCGGTTCGCGCGGTGTCGGCAATCGCTTCGGCACCTAT 252048
Query 41501 TACATCGAGCGTGCGCAGAAGGAG-TGCGGCATGTGGCACAGCAGCCTGCCGCACAACGA 41559
| |||||| || || || | ||| ||| || ||||||| || ||||||| | | ||
Sbjct 252049 TTCATCGAACGGGCCAAGCACGAGATGC-GCCGCTGGCACATCAACCTGCCGGATCAGGA 252107
Query 41560 TCTCGCGTTCTTCCCTGAGGACACTCCGGGCTTCAATCACTACGTCCTGTCCATGCTGTG 41619
|| || | ||||| || | || ||||||| |||| |||| | | || |||
Sbjct 252108 CCTGGCCTATTTCCCGGAAGGGACGGACGGCTTCATCGACTATGTCCGGGCGGTGTCGTG 252167
Query 41620 GGCGCAGGACTTCGCTCGGCAGAATCGTGCGGTGATGTTGCAGATC--GTGATCCAAGCG 41677
||||||| | | || || || || | ||||||| || |||| ||| | | |
Sbjct 252168 GGCGCAGAAATATGCGCGCGCCAACCGCGAGGTGATGATG--GATCAGGTGCTTGGGGTG 252225
Query 41678 CTGCGTCGTCATCT-GCCGGCCTTCGAGCTGACGGAAGAGGCGGTGAACTGCCACCACAA 41736
||| | | ||| ||||| | ||| |||| | || ||||||||||||||||||||
Sbjct 252226 CTG-AAGGCCGTCTGGCCGGATCTGGAGACGACGCAGGAAGCGGTGAACTGCCACCACAA 252284
Query 41737 CTATTGTGAGCAGGAGAACCACTTCGGGCGCAACGTGTGGGTCACGCGCAAGGGTGCGGT 41796
||| | |||| || || ||||| | || | | || || || || ||| |
Sbjct 252285 CTACGTCTCGAAGGAAAAGCATTTCGGCAAGGATGTCTTCCTGACCCGAAAAGGCGCGAT 252344
Query 41797 -TCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGATCCATGGGTACGAAGTCGTACA 41855
||| || | || | ||| ||||| ||||| || ||||| ||||| ||||||| | ||
Sbjct 252345 GTCGGCCAAG-GACGGCGAACTGGGCATCATCCCCGGATCGATGGGGGCGAAGTCCTTCA 252403
Query 41856 TCGTCAAGGGCAAGGGCAATCCGCATTCGTACTGCTCGTGCAGTCACGGGGCAGGACGCC 41915
|||| |||||||||||| || | | |||| | ||| ||||| || || ||
Sbjct 252404 TCGTGCGCGGCAAGGGCAATGCGGAAAGCTTCTGCACCTGCTCGCACGGCGCCGGTCGGA 252463
Query 41916 GTATGTCGCGCACCGAGGCCGTCAAG---CGATTCACCGTCGAAGACCTCGTGC-AGCAG 41971
||| || |||||||| |||| || ||||| ||||| |||| ||| | ||
Sbjct 252464 CCATGAGCCGGACCGAGGC---CAAGCGCCGCTTCACGGTCGAGGACCACGTCCGCGCCA 252520
Query 41972 ACGCAGGGTGTTGAATGCCCGAAGACCAAGGAAGTGCTGGATGAAATCCCGGCCGCGTAC 42031
||| || || || |||| ||| | |||||| | || |||| |||| || ||
Sbjct 252521 CCGC-TGGCGTCGAGTGCCGCAAGGACGCCGAAGTGATCGACGAAACCCCGATGGCCTAT 252579
Query 42032 AAGGACATCGATCAGGTGATGCTTGACCAAAGCGATCTGGTGGAAGTCGTTCATACGCTG 42091
||||||||||| ||| || | ||| | ||| ||| | || ||||| || || |||
Sbjct 252580 AAGGACATCGACGCGGTCATCGCGGCCCAGACCGACCTGATCGAGGTCGTGCACACCCTG 252639
Score = 120 bits (132), Expect = 4e-22
Identities = 165/230 (72%), Gaps = 3/230 (1%)
Strand=Plus/Plus
Query 40923 CCCTCGAACAAGCGGCGCTGGAACAAGCCAAGAACATCACCCGACTGCCCTTCATCCATC 40982
|| |||| | ||||||||| |||| |||||| | || ||||| |||||||||
Sbjct 251513 CCATCGAGGATGCGGCGCTGAAACAGCTGAAGAACGTGGCCTCGCTGCCGTTCATCCATA 251572
Query 40983 CGCACGGCGTCGCGTTGATGCCGGACGCGCACGCAGGCATCGGCAGCACGGTAGGATCGG 41042
|| | ||||| | ||||| |||| |||| ||||| || ||||| || || |
Sbjct 251573 AACATG---TCGCGGTCATGCCCGACGTGCACTGGGGCATGGGGGCGACGGTGGGTTCCG 251629
Query 41043 TGATCGCTACGCAAGGTGCCATCATTCCGGCGGCGGTGGGCGTGGACATCGGCTGCGGCA 41102
||||| | || || || |||||||| || || |||||||||||||||||||||||||
Sbjct 251630 TGATCCCGACCGTGGGGGCGATCATTCCCGCCGCCGTGGGCGTGGACATCGGCTGCGGCA 251689
Query 41103 TGGTGGCGGTTCGTACCAGTCTCAAGGCCAGTCAGTTGCCGGACAACCTG 41152
|| ||||||| || ||| || |||| || |||| ||| |||||
Sbjct 251690 TGATGGCGGTGCGGACCTCGATCCGGGCCGAGCACCTGCCTGACGACCTG 251739
>seq827
Length=173386
Score = 91.5 bits (100), Expect = 2e-13
Identities = 72/85 (85%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 186518 CGGCTTGCAGATGGTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAG 186577
|||| | | | ||||| | | ||||||||||||||||||||||| ||| ||||||| |||
Sbjct 172539 CGGCCTTCCGTTGGTCGGGGCGAGAGGATTCGAACCTCCGACCCTCTGGTCCCAAACCAG 172480
Query 186578 GTGCGCTAACCAGACTGCGCTACAC 186602
|||||| ||||| |||||||||||
Sbjct 172479 ATGCGCT-ACCAGGCTGCGCTACAC 172456
>seq854
Length=160767
Score = 84.2 bits (92), Expect = 3e-11
Identities = 110/147 (75%), Gaps = 4/147 (3%)
Strand=Plus/Plus
Query 59389 TCAAGGTCATTCAGATCGCAGAGCGCGACACGCAGATCCTCAAGCAGCCCAAGGAACCCA 59448
|||||| ||| || ||||||||||||||||| ||| | ||| |||| || |||||
Sbjct 111862 TCAAGGGCATCCACATCGCAGAGCGCGACACCCAGCGCTCGAAGAAGCCGAAAGAACCGG 111921
Query 59449 ACGTGTTCACCAACACGTGG-AGTTGTGAGGGCTTCTGGGCTGAAGGTCGCGC-GCCCAG 59506
|||||||| |||||| ||| | || || |||||| | | ||| || || |||
Sbjct 111922 ACGTGTTCGTCAACACCTGGTCGGTG-GAAGGCTTCATCTC-GGAGGGCGTGCAGCCGTC 111979
Query 59507 CGAGCTGGGATGGGGCACGCACGAAAA 59533
||| ||||| |||||||| ||||||||
Sbjct 111980 CGAACTGGGCTGGGGCACCCACGAAAA 112006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 739874136348600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |