Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq752 197 2e-45 seq827 91.5 2e-13 seq854 84.2 3e-11 >seq752 Length=262051 Score = 197 bits (218), Expect = 2e-45 Identities = 484/720 (67%), Gaps = 18/720 (3%) Strand=Plus/Plus Query 41381 CAGCTTGGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGCAA 41440 || || ||||| ||||| |||||||||||||||| || |||||| | || || || Sbjct 251929 CATCTGGGCACCCTGGGCACCGGCAACCACTTCATCGAGCTGTGCCTTGATGAGGCGGGC 251988 Query 41441 GACGTGTGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTCAC 41500 || || ||| | |||||||| ||||||||||||||| ||||| | ||||| | Sbjct 251989 GATGTCTGGGTGATGCTGCACTCCGGTTCGCGCGGTGTCGGCAATCGCTTCGGCACCTAT 252048 Query 41501 TACATCGAGCGTGCGCAGAAGGAG-TGCGGCATGTGGCACAGCAGCCTGCCGCACAACGA 41559 | |||||| || || || | ||| ||| || ||||||| || ||||||| | | || Sbjct 252049 TTCATCGAACGGGCCAAGCACGAGATGC-GCCGCTGGCACATCAACCTGCCGGATCAGGA 252107 Query 41560 TCTCGCGTTCTTCCCTGAGGACACTCCGGGCTTCAATCACTACGTCCTGTCCATGCTGTG 41619 || || | ||||| || | || ||||||| |||| |||| | | || ||| Sbjct 252108 CCTGGCCTATTTCCCGGAAGGGACGGACGGCTTCATCGACTATGTCCGGGCGGTGTCGTG 252167 Query 41620 GGCGCAGGACTTCGCTCGGCAGAATCGTGCGGTGATGTTGCAGATC--GTGATCCAAGCG 41677 ||||||| | | || || || || | ||||||| || |||| ||| | | | Sbjct 252168 GGCGCAGAAATATGCGCGCGCCAACCGCGAGGTGATGATG--GATCAGGTGCTTGGGGTG 252225 Query 41678 CTGCGTCGTCATCT-GCCGGCCTTCGAGCTGACGGAAGAGGCGGTGAACTGCCACCACAA 41736 ||| | | ||| ||||| | ||| |||| | || |||||||||||||||||||| Sbjct 252226 CTG-AAGGCCGTCTGGCCGGATCTGGAGACGACGCAGGAAGCGGTGAACTGCCACCACAA 252284 Query 41737 CTATTGTGAGCAGGAGAACCACTTCGGGCGCAACGTGTGGGTCACGCGCAAGGGTGCGGT 41796 ||| | |||| || || ||||| | || | | || || || || ||| | Sbjct 252285 CTACGTCTCGAAGGAAAAGCATTTCGGCAAGGATGTCTTCCTGACCCGAAAAGGCGCGAT 252344 Query 41797 -TCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGATCCATGGGTACGAAGTCGTACA 41855 ||| || | || | ||| ||||| ||||| || ||||| ||||| ||||||| | || Sbjct 252345 GTCGGCCAAG-GACGGCGAACTGGGCATCATCCCCGGATCGATGGGGGCGAAGTCCTTCA 252403 Query 41856 TCGTCAAGGGCAAGGGCAATCCGCATTCGTACTGCTCGTGCAGTCACGGGGCAGGACGCC 41915 |||| |||||||||||| || | | |||| | ||| ||||| || || || Sbjct 252404 TCGTGCGCGGCAAGGGCAATGCGGAAAGCTTCTGCACCTGCTCGCACGGCGCCGGTCGGA 252463 Query 41916 GTATGTCGCGCACCGAGGCCGTCAAG---CGATTCACCGTCGAAGACCTCGTGC-AGCAG 41971 ||| || |||||||| |||| || ||||| ||||| |||| ||| | || Sbjct 252464 CCATGAGCCGGACCGAGGC---CAAGCGCCGCTTCACGGTCGAGGACCACGTCCGCGCCA 252520 Query 41972 ACGCAGGGTGTTGAATGCCCGAAGACCAAGGAAGTGCTGGATGAAATCCCGGCCGCGTAC 42031 ||| || || || |||| ||| | |||||| | || |||| |||| || || Sbjct 252521 CCGC-TGGCGTCGAGTGCCGCAAGGACGCCGAAGTGATCGACGAAACCCCGATGGCCTAT 252579 Query 42032 AAGGACATCGATCAGGTGATGCTTGACCAAAGCGATCTGGTGGAAGTCGTTCATACGCTG 42091 ||||||||||| ||| || | ||| | ||| ||| | || ||||| || || ||| Sbjct 252580 AAGGACATCGACGCGGTCATCGCGGCCCAGACCGACCTGATCGAGGTCGTGCACACCCTG 252639 Score = 120 bits (132), Expect = 4e-22 Identities = 165/230 (72%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 40923 CCCTCGAACAAGCGGCGCTGGAACAAGCCAAGAACATCACCCGACTGCCCTTCATCCATC 40982 || |||| | ||||||||| |||| |||||| | || ||||| ||||||||| Sbjct 251513 CCATCGAGGATGCGGCGCTGAAACAGCTGAAGAACGTGGCCTCGCTGCCGTTCATCCATA 251572 Query 40983 CGCACGGCGTCGCGTTGATGCCGGACGCGCACGCAGGCATCGGCAGCACGGTAGGATCGG 41042 || | ||||| | ||||| |||| |||| ||||| || ||||| || || | Sbjct 251573 AACATG---TCGCGGTCATGCCCGACGTGCACTGGGGCATGGGGGCGACGGTGGGTTCCG 251629 Query 41043 TGATCGCTACGCAAGGTGCCATCATTCCGGCGGCGGTGGGCGTGGACATCGGCTGCGGCA 41102 ||||| | || || || |||||||| || || ||||||||||||||||||||||||| Sbjct 251630 TGATCCCGACCGTGGGGGCGATCATTCCCGCCGCCGTGGGCGTGGACATCGGCTGCGGCA 251689 Query 41103 TGGTGGCGGTTCGTACCAGTCTCAAGGCCAGTCAGTTGCCGGACAACCTG 41152 || ||||||| || ||| || |||| || |||| ||| ||||| Sbjct 251690 TGATGGCGGTGCGGACCTCGATCCGGGCCGAGCACCTGCCTGACGACCTG 251739 >seq827 Length=173386 Score = 91.5 bits (100), Expect = 2e-13 Identities = 72/85 (85%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 186518 CGGCTTGCAGATGGTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAG 186577 |||| | | | ||||| | | ||||||||||||||||||||||| ||| ||||||| ||| Sbjct 172539 CGGCCTTCCGTTGGTCGGGGCGAGAGGATTCGAACCTCCGACCCTCTGGTCCCAAACCAG 172480 Query 186578 GTGCGCTAACCAGACTGCGCTACAC 186602 |||||| ||||| ||||||||||| Sbjct 172479 ATGCGCT-ACCAGGCTGCGCTACAC 172456 >seq854 Length=160767 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/147 (75%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 59389 TCAAGGTCATTCAGATCGCAGAGCGCGACACGCAGATCCTCAAGCAGCCCAAGGAACCCA 59448 |||||| ||| || ||||||||||||||||| ||| | ||| |||| || ||||| Sbjct 111862 TCAAGGGCATCCACATCGCAGAGCGCGACACCCAGCGCTCGAAGAAGCCGAAAGAACCGG 111921 Query 59449 ACGTGTTCACCAACACGTGG-AGTTGTGAGGGCTTCTGGGCTGAAGGTCGCGC-GCCCAG 59506 |||||||| |||||| ||| | || || |||||| | | ||| || || ||| Sbjct 111922 ACGTGTTCGTCAACACCTGGTCGGTG-GAAGGCTTCATCTC-GGAGGGCGTGCAGCCGTC 111979 Query 59507 CGAGCTGGGATGGGGCACGCACGAAAA 59533 ||| ||||| |||||||| |||||||| Sbjct 111980 CGAACTGGGCTGGGGCACCCACGAAAA 112006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739874136348600