Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq931 302 2e-77 seq998 237 8e-58 seq1095 230 1e-55 >seq931 Length=105225 Score = 302 bits (334), Expect = 2e-77 Identities = 588/852 (69%), Gaps = 21/852 (2%) Strand=Plus/Minus Query 65919 ACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTA 65978 ||||||||| | | ||||||| || || |||||||| || || || ||||| Sbjct 85372 ACCGGCTCGCTGGGTCTGGACATGGCGCTGGGCATCGGCGGCCTGCCTGTCGGGCGGGTG 85313 Query 65979 GTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCC 66038 | ||| | | ||| || || || || || ||| | || || ||| ||| ||||||| Sbjct 85312 ATCGAGGTGTTCGGCCCCGAATCCTCGGGCAAGACGACCCTGGCCCTGCACACGGTGGCG 85253 Query 66039 AATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCT 66098 | | ||||||| || ||| |||||||| | | ||||||||||| | || ||||| Sbjct 85252 GAAGTCCAGAAGAAGGGCGGCGTCGCCGCCTTCGTGGACGCCGAACACGCGCTGGACCCC 85193 Query 66099 GAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACT 66158 | || ||| | ||| || || || | || |||| |||| |||||| ||||| Sbjct 85192 GTCTATGCCCAGAAGCTGGGCGTCAATCTGGATGATCTTCTGGTGTCGCAGCCCGACACG 85133 Query 66159 GGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATC 66218 ||||||||||| ||||||||||| ||| || || || |||| || |||| | Sbjct 85132 GGCGAGCAGGCGCTGGAGATCGTGGACACGCTGGTGCGTTCGGGCGCCGTGGACATCGTG 85073 Query 66219 GTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGAC 66278 || || ||||| || || |||||| ||||| || || ||||||| || || || ||| Sbjct 85072 GTGGTCGACTCGGTCGCCGCCCTGACCCCGCGCGCTGAAATCGAAGGCGAGATGGGCGAC 85013 Query 66279 TCGCACGTCGGC-CTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCAC 66337 || | ||| || || ||||| |||||| ||||| ||||||||||||||| | | Sbjct 85012 A-GCCTGCCGGGTCTTCAGGCCCGTCTGATGAGCCAGGCGCTGCGCAAGCTGACCGCCTC 84954 Query 66338 GATTGCCAGCACCAACACGC-TCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCA 66396 ||| ||| | || | || || ||||| | || ||| | || | ||||||||| Sbjct 84953 GATCTCCAAGTCGAA-ATGCATCGTCCTGTTCATCAACCAGATCCGTCACAAGATCGGCG 84895 Query 66397 ACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCT 66456 | || ||||| || || ||||| || || || || || ||| |||||||||| Sbjct 84894 TCATG---TACGGTTCGCCGGAAACCACGACGGGCGGCAATGCGCTGAAGTTCTACGCCT 84838 Query 66457 CGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCA 66516 ||||||| |||| ||||| | | || | | ||| | ||||||||| ||||||| Sbjct 84837 CGGTGCGACTGGACATCCGCCGCACCGGCGCGATCAAGAACCGCGATGAGGTGGTCGGCA 84778 Query 66517 ACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGT 66576 || ||| ||||| ||||| |||||||||||| | || || ||| |||| ||| | | | Sbjct 84777 ACACCACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCCCCGCCGTTCCGCGAGG-TCA-T 84720 Query 66577 TTTC--CATCGTCTACGGCGAGGGCATTTCC-CGCGAGGCTGAACTCCTCGACATGGCCG 66633 ||| |||| | |||||||| ||||| ||| || ||| || || ||||| ||| || Sbjct 84719 CTTCGACATCATGTACGGCGAAGGCATCTCCAAGCTGGGC-GAGGTCATCGACCTGGGCG 84661 Query 66634 TTTCCCGAGGGC-TCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATC 66692 | | |||| | ||| ||||| | || |||||||| |||| | |||| Sbjct 84660 -TCAAGGCGGGCGTGATCGAGAAGGCGGGCAGCTGGTTCAGCTACGATTCAACCCGCATC 84602 Query 66693 GGCCAGGGCAAGCCCAAGACCGTGC---AGTGGCTGAAGGACAACCCGGACGTCGCCGCC 66749 ||||||||| | | ||| |||| ||| ||||| | ||||| ||| |||||||| Sbjct 84601 GGCCAGGGC---CGCGAGAATGTGCGCGAGTTCCTGAAACAGAACCCCGACATCGCCGCC 84545 Query 66750 TCCATCGAACAG 66761 ||||||||| || Sbjct 84544 TCCATCGAAAAG 84533 >seq998 Length=1052685 Score = 237 bits (262), Expect = 8e-58 Identities = 452/665 (68%), Gaps = 3/665 (0%) Strand=Plus/Plus Query 65934 CTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTAGTGGAGATCTACGGT 65993 || ||| ||| |||||| |||| ||| |||| ||||||||| || ||||| |||||| Sbjct 138318 CTCGACATCGCGCTCGGCGTCGGCGGGCTGCCGAAGGGCCGGGTGGTCGAGATTTACGGT 138377 Query 65994 CCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCCAATGCCCAGAAGGCC 66053 ||||| || || || ||| | ||| || || || |||||||| | ||||||||| Sbjct 138378 CCTGAATCCTCCGGCAAGACCACGCTGGCGCTGCATACGGTGGCCGAGGCCCAGAAGAAG 138437 Query 66054 GGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCG 66113 || |||| | |||| |||||||||||||||| | || ||||| | || ||| | Sbjct 138438 GGCGGCACCTGTGCCTTCATCGACGCCGAACATGCACTGGACCCGGTCTATGCCCGCAAG 138497 Query 66114 CTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTG 66173 ||||| || ||||||| | || || || ||||| ||| |||||| ||||| || Sbjct 138498 CTCGGCGTCAATGTCGATGAACTGCTGATTTCCCAGCCCGACCATGGCGAACAGGCGCTT 138557 Query 66174 GAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTG 66233 ||||||| || || || || |||| ||| | | | | || || || || Sbjct 138558 GAGATCGCCGATACGCTGGTGCGCTCCGGCGCGGTGGACGTGCTGATCGTCGATTCGGTC 138617 Query 66234 GCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTG 66293 || || || |||||||| || || ||||| || || || || ||| ||| || || Sbjct 138618 GCAGCTCTTGTGCCGCGCGCCGAACTCGAGGGTGAGATGGGCGACGCGCTGCCGGGTTTG 138677 Query 66294 CATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAAC 66353 || || ||| ||||| ||||| ||||||||||||| | |||| || || || Sbjct 138678 CAGGCGCGCTTGATGAGCCAGGCGCTGCGCAAGCTGACGGCTTCGATCAACAAGTCCCAC 138737 Query 66354 ACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCG 66413 || | | | | || ||| | ||| ||||||||| ||| |||||| || Sbjct 138738 ACCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGG---GGTGATGTACGGCTCG 138794 Query 66414 AATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTC 66473 || ||||| || || || || || ||| ||||| ||||| || || | || | Sbjct 138795 CCGGAAACCACGACGGGCGGCAATGCCCTGAAATTCTATGCCTCCGTCCGCCTCGACATT 138854 Query 66474 CGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAG 66533 ||| | |||| | | ||||| |||| |||| |||||||| ||| ||||| ||| Sbjct 138855 CGCCGCATCGGCGCGATCAAGGAGCGCGACGAGGTGATCGGCAACTCCACCCGCGTCAAG 138914 Query 66534 GTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGC 66593 || || ||||||||||| ||||| ||| | |||| || || |||| | |||||| Sbjct 138915 GTGGTGAAGAACAAGCTTGCGCCGCCGTTCAAGCAGGTCGAATTCGACATCATGTACGGC 138974 Query 66594 GAGGG 66598 ||||| Sbjct 138975 GAGGG 138979 >seq1095 Length=1089284 Score = 230 bits (254), Expect = 1e-55 Identities = 497/742 (67%), Gaps = 11/742 (1%) Strand=Plus/Minus Query 65934 CTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTAGTGGAGATCTACGGT 65993 |||||| ||| |||||| |||| ||| |||| ||| || | || || || ||||| Sbjct 868767 CTGGACATCGCGCTCGGCGTCGGCGGGCTCCCGAAGGGACGCATCGTTGAAATTTACGGG 868708 Query 65994 CCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCCAATGCCCAGAAGGCC 66053 || || || || || ||| | ||| || || || ||||| | || |||||| Sbjct 868707 CCGGAATCCTCGGGCAAGACCACGCTGGCGCTGCATTGTGTGGCAGAGGCACAGAAGAAG 868648 Query 66054 GGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCG 66113 || |||| ||||| |||||| |||||||| | ||||| || | || ||| | Sbjct 868647 GGCGGCATTTGCGCCTTCATCGATGCCGAACACGCACTCGATCCGGTCTATGCCCGCAAG 868588 Query 66114 CTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTG 66173 ||||| || |||||||| | || || | |||||| ||| ||| |||||||| ||| Sbjct 868587 CTCGGCGTCAATGTCGACGAACTGCTGATCTCGCAGCCCGACCATGGTGAGCAGGCGCTG 868528 Query 66174 GAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTG 66233 || || | || || || || |||| ||| | | | | | || || ||| Sbjct 868527 GAAATAGCCGATACGCTGGTGCGCTCCGGCGCGGTGGACGTGCTGATCATCGATTCGGTG 868468 Query 66234 GCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTG 66293 || || |||||||| || || || |||||||| || || || || || |||| || Sbjct 868467 GCCGCGCTGGTGCCACGCGCCGAACTCGAAGGCGAGATGGGCGATGCGTTGCCCGGCTTG 868408 Query 66294 CATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAAC 66353 || || || |||||| ||||| ||||||||||||| | | |||| || ||||| Sbjct 868407 CAGGCACGGCTGATGAGCCAGGCGCTGCGCAAGCTGACGGCCTCGATCAACAAGTCCAAC 868348 Query 66354 ACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCG 66413 || | | | | || ||| | ||| ||||||||| ||| || ||| || Sbjct 868347 ACCATGGTGATTTTCATCAACCAGATCCGCATGAAGATCGGG---GTGATGTATGGCTCG 868291 Query 66414 AATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTC 66473 || ||||||||||| || || || ||| |||||||| |||||||| | || || Sbjct 868290 CCGGAAACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCTTCGGTGCGGCTCGACATC 868231 Query 66474 CGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAG 66533 ||| | |||| | || ||||| |||| |||| ||||||||| ||| ||||| ||| Sbjct 868230 CGCCGCATCGGCGCCATCAAGGAGCGCGACGAGGTGGTCGGCAACTCCACCCGCGTCAAG 868171 Query 66534 GTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGC 66593 || || |||||||||||||| || ||| | |||| || || |||| | |||||| Sbjct 868170 GTGGTGAAGAACAAGCTGGCACCGCCGTTCAAGCAGGTCGAATTCGACATCATGTACGGC 868111 Query 66594 GAGGGCATTTCCCGCGAGGCTGAACTCCTCGACATGGCCGTTTCCCGAGGGC----TCAT 66649 ||||| | || || ||| |||||||| | | ||| | ||| | || | Sbjct 868110 GAGGGTGTGTCGAAGATGGGCGAAATCCTCGACCTCGGCGT----CAAGGCCGGCATCGT 868055 Query 66650 CAAGAAGTCTGGGGCCTGGTTC 66671 | | ||||| || ||||||||| Sbjct 868054 CGAAAAGTCGGGCGCCTGGTTC 868033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242465970293108