Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq712 385 5e-102 seq69 98.7 1e-15 seq931 93.3 4e-14 seq249 89.7 5e-13 seq191 84.2 2e-11 >seq712 Length=321952 Score = 385 bits (426), Expect = 5e-102 Identities = 667/957 (70%), Gaps = 22/957 (2%) Strand=Plus/Minus Query 155932 CGCGCCATCAACTGGAACCGCGTGATCGACGA---GAAGGACGCGGAGGTGTGGAACCGG 155988 || || |||||||||||||| |||||| || ||| ||| ||||| |||||||| Sbjct 143971 CGTGCGATCAACTGGAACCG---GATCGAAGATGAGAAAGACCTTGAGGTCTGGAACCGT 143915 Query 155989 CTGACCAACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGG 156048 |||||| ||| |||||||||||||| ||| | ||| | || || || | ||||||||| Sbjct 143914 CTGACCGGCAATTTCTGGCTGCCGGAAAAGGTGCCGCTTTCGAACGATATTCAGTCGTGG 143855 Query 156049 CACCAGCTGA--CCG-AGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACG 156105 | ||||| ||| ||||| ||| |||| | || || || |||||||| ||||| Sbjct 143854 GAAACGCTGAAACCGCAGGAAAAGCAACTGA---CGATCCGCGTTTTCACCGGGCTGACA 143798 Query 156106 ATGCTGGACACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACC 156165 | || || || |||||| | | ||||| || || ||| || || || || Sbjct 143797 CTTCTCGATACGATCCAGAACGCAGTCGGTGCCGTGAAGCTGATGGATGATGCAGCGACG 143738 Query 156166 CCGCACGAGGAGGCGGTGTACACCAACATCGCGTTCATGGAGAGCG-TGCACGCACGCAG 156224 ||||| || || |||||| |||||||| | |||||||| |||| | || ||||| Sbjct 143737 CCGCATGAAGAAGCGGTGCTGTCCAACATCTCCTTCATGGA-AGCGGTTCATGCACGATC 143679 Query 156225 CTACTCGAACATCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTG 156284 ||| ||| || |||||||| ||||| || ||| | |||| || | || || Sbjct 143678 CTATTCGTCGATATTCTCGACTTTGTGCCTGACGCCGGATGTTGACGATGCCTATCGTTG 143619 Query 156285 GTCGGAGGAGAACGCCAACCTGCAGAAGAAGGCTGAGATCGTGCTCAGCTACTACAACGG 156344 ||| ||||| |||| ||||||| ||| | | | | || | | || || Sbjct 143618 GTCCGAGGAAAACGAATTCCTGCAGCGCAAGTCCGTTCTGATCCTGGACCAGTATCGCGC 143559 Query 156345 TGACGACCCGCTCAAGCGCAAGGTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAG 156404 || || ||||| || | || ||||| | | |||||| |||| |||||||| Sbjct 143558 GGATGATCCGCTGAAAAGGAAAATCGCCAGCGTTTTCCTGGAGAGCTTTCTGTTCTATTC 143499 Query 156405 CGGCTTCTACCTGCCGATGTTCTGGTCGTCGCGAGGCAAGCTCACCAACACCGCCGACAT 156464 ||||||||| ||||| |||| ||||||| || | ||||| ||||| || ||||| | Sbjct 143498 CGGCTTCTATCTGCCCATGTACTGGTCGAGCCGGGCAAAGCTGACCAATACAGCCGATCT 143439 Query 156465 GATCCGGCTCATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCA 156524 ||||||||||||||||| || ||||| ||||| ||||| |||||||| ||||| ||||| Sbjct 143438 TATCCGGCTCATCATCCGTGATGAGGCTGTGCATGGCTATTACATCGGTTACAAATTCCA 143379 Query 156525 GAAGGGCCTGGA--GAAGGAGACCAAGGCCCGCCAGCAGGAACTCAAGGACTACACCTAT 156582 | || ||||| | || || ||| | | |||||| | ||||||| | ||| Sbjct 143378 GCGCGGACTGGAACGCTTGA-ACGAAGAGCAG-AAGCAGGCAATCAAGGATTTTGCCTTC 143321 Query 156583 GAGCTGCTGTTCGAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTACGACGCC 156642 || || || | || || | |||||| ||| ||||| | | || || || | | Sbjct 143320 GAACTTCTTCTGGAACTTTACGACAATGAGGTTCGCTACACGGAAGCGCTATATGATGGC 143261 Query 156643 ACCGGCCAGACCGAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAG 156702 |||| || || ||||| ||||| ||||||| ||||||| ||||||||| || | Sbjct 143260 GTTGGCCTAACTGAAGACGTCAAGAAATTCCTGCATTACAACGCCAACAAGGCTCTCATG 143201 Query 156703 AACCTGGGCTACGACGCGCTGTT--CAGCCGCAGCGACTGCGACGTCAACCCGGCCATCC 156760 ||||| ||||| || || || || | || | |||| ||| | ||||||||||| |||| Sbjct 143200 AACCTCGGCTATGAGGCACTCTTCCCGGCTGAAGCG--TGCAAGGTCAACCCGGCGATCC 143143 Query 156761 TGAGCGCGCTGTCGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCA 156820 || ||| || ||||| || |||||| ||||||||||| ||||| || || ||| Sbjct 143142 TGTCCGCTCTTTCGCCGAATGCAGACGAAAACCACGACTTTTTCTCCGGTTCCGGCTCTT 143083 Query 156821 CGTACGTCATGGCCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTTCTGATGGC 156877 | |||||||| | ||||| || | || || || || |||||| |||||||||| Sbjct 143082 CTTACGTCATCGGCAAGGCGGTCGCGACTGAGGATGAAGACTGGAGTTTCTGATGGC 143026 >seq69 Length=12372 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| | |||||||||||||||||| ||||||||||||||| ||| ||| ||||||||| Sbjct 109 GCGGGATGGAGCAGCTCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 168 Query 92675 CCCACTCCCGCCAC 92688 || |||||||| || Sbjct 169 CCTACTCCCGCAAC 182 >seq931 Length=105225 Score = 93.3 bits (102), Expect = 4e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||| | ||||||| |||||||||| ||||||||||||||| ||| ||| ||||||||| Sbjct 270 GCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 329 Query 92675 CCCACTCCCGC 92685 || |||||||| Sbjct 330 CCTACTCCCGC 340 >seq249 Length=9465 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||| ||||||| |||||||||| ||||||||||||||| |||||| ||||||||| Sbjct 3477 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 3418 Query 92675 CCCACTCCCGCCAC 92688 || | ||||| || Sbjct 3417 CCTGCCCCCGCAAC 3404 >seq191 Length=470810 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674 ||||||| ||||||| |||||||||| ||||||||||||||| ||| | | ||||||||| Sbjct 274656 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCATAGGTTCAAAT 274597 Query 92675 CCCACTCCCGCCAC 92688 || | ||||| || Sbjct 274596 CCTATCCCCGCAAC 274583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526588532862480