Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09]
1,499 sequences; 18,613,147 total letters
Query= NC_011273.1
Length=164602
Score E
Sequences producing significant alignments: (Bits) Value
seq712 385 5e-102
seq69 98.7 1e-15
seq931 93.3 4e-14
seq249 89.7 5e-13
seq191 84.2 2e-11
>seq712
Length=321952
Score = 385 bits (426), Expect = 5e-102
Identities = 667/957 (70%), Gaps = 22/957 (2%)
Strand=Plus/Minus
Query 155932 CGCGCCATCAACTGGAACCGCGTGATCGACGA---GAAGGACGCGGAGGTGTGGAACCGG 155988
|| || |||||||||||||| |||||| || ||| ||| ||||| ||||||||
Sbjct 143971 CGTGCGATCAACTGGAACCG---GATCGAAGATGAGAAAGACCTTGAGGTCTGGAACCGT 143915
Query 155989 CTGACCAACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGG 156048
|||||| ||| |||||||||||||| ||| | ||| | || || || | |||||||||
Sbjct 143914 CTGACCGGCAATTTCTGGCTGCCGGAAAAGGTGCCGCTTTCGAACGATATTCAGTCGTGG 143855
Query 156049 CACCAGCTGA--CCG-AGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACG 156105
| ||||| ||| ||||| ||| |||| | || || || |||||||| |||||
Sbjct 143854 GAAACGCTGAAACCGCAGGAAAAGCAACTGA---CGATCCGCGTTTTCACCGGGCTGACA 143798
Query 156106 ATGCTGGACACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACC 156165
| || || || |||||| | | ||||| || || ||| || || || ||
Sbjct 143797 CTTCTCGATACGATCCAGAACGCAGTCGGTGCCGTGAAGCTGATGGATGATGCAGCGACG 143738
Query 156166 CCGCACGAGGAGGCGGTGTACACCAACATCGCGTTCATGGAGAGCG-TGCACGCACGCAG 156224
||||| || || |||||| |||||||| | |||||||| |||| | || |||||
Sbjct 143737 CCGCATGAAGAAGCGGTGCTGTCCAACATCTCCTTCATGGA-AGCGGTTCATGCACGATC 143679
Query 156225 CTACTCGAACATCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTG 156284
||| ||| || |||||||| ||||| || ||| | |||| || | || ||
Sbjct 143678 CTATTCGTCGATATTCTCGACTTTGTGCCTGACGCCGGATGTTGACGATGCCTATCGTTG 143619
Query 156285 GTCGGAGGAGAACGCCAACCTGCAGAAGAAGGCTGAGATCGTGCTCAGCTACTACAACGG 156344
||| ||||| |||| ||||||| ||| | | | | || | | || ||
Sbjct 143618 GTCCGAGGAAAACGAATTCCTGCAGCGCAAGTCCGTTCTGATCCTGGACCAGTATCGCGC 143559
Query 156345 TGACGACCCGCTCAAGCGCAAGGTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAG 156404
|| || ||||| || | || ||||| | | |||||| |||| ||||||||
Sbjct 143558 GGATGATCCGCTGAAAAGGAAAATCGCCAGCGTTTTCCTGGAGAGCTTTCTGTTCTATTC 143499
Query 156405 CGGCTTCTACCTGCCGATGTTCTGGTCGTCGCGAGGCAAGCTCACCAACACCGCCGACAT 156464
||||||||| ||||| |||| ||||||| || | ||||| ||||| || ||||| |
Sbjct 143498 CGGCTTCTATCTGCCCATGTACTGGTCGAGCCGGGCAAAGCTGACCAATACAGCCGATCT 143439
Query 156465 GATCCGGCTCATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCA 156524
||||||||||||||||| || ||||| ||||| ||||| |||||||| ||||| |||||
Sbjct 143438 TATCCGGCTCATCATCCGTGATGAGGCTGTGCATGGCTATTACATCGGTTACAAATTCCA 143379
Query 156525 GAAGGGCCTGGA--GAAGGAGACCAAGGCCCGCCAGCAGGAACTCAAGGACTACACCTAT 156582
| || ||||| | || || ||| | | |||||| | ||||||| | |||
Sbjct 143378 GCGCGGACTGGAACGCTTGA-ACGAAGAGCAG-AAGCAGGCAATCAAGGATTTTGCCTTC 143321
Query 156583 GAGCTGCTGTTCGAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTACGACGCC 156642
|| || || | || || | |||||| ||| ||||| | | || || || | |
Sbjct 143320 GAACTTCTTCTGGAACTTTACGACAATGAGGTTCGCTACACGGAAGCGCTATATGATGGC 143261
Query 156643 ACCGGCCAGACCGAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAG 156702
|||| || || ||||| ||||| ||||||| ||||||| ||||||||| || |
Sbjct 143260 GTTGGCCTAACTGAAGACGTCAAGAAATTCCTGCATTACAACGCCAACAAGGCTCTCATG 143201
Query 156703 AACCTGGGCTACGACGCGCTGTT--CAGCCGCAGCGACTGCGACGTCAACCCGGCCATCC 156760
||||| ||||| || || || || | || | |||| ||| | ||||||||||| ||||
Sbjct 143200 AACCTCGGCTATGAGGCACTCTTCCCGGCTGAAGCG--TGCAAGGTCAACCCGGCGATCC 143143
Query 156761 TGAGCGCGCTGTCGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCA 156820
|| ||| || ||||| || |||||| ||||||||||| ||||| || || |||
Sbjct 143142 TGTCCGCTCTTTCGCCGAATGCAGACGAAAACCACGACTTTTTCTCCGGTTCCGGCTCTT 143083
Query 156821 CGTACGTCATGGCCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTTCTGATGGC 156877
| |||||||| | ||||| || | || || || || |||||| ||||||||||
Sbjct 143082 CTTACGTCATCGGCAAGGCGGTCGCGACTGAGGATGAAGACTGGAGTTTCTGATGGC 143026
>seq69
Length=12372
Score = 98.7 bits (108), Expect = 1e-15
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| | |||||||||||||||||| ||||||||||||||| ||| ||| |||||||||
Sbjct 109 GCGGGATGGAGCAGCTCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 168
Query 92675 CCCACTCCCGCCAC 92688
|| |||||||| ||
Sbjct 169 CCTACTCCCGCAAC 182
>seq931
Length=105225
Score = 93.3 bits (102), Expect = 4e-14
Identities = 63/71 (89%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||| | ||||||| |||||||||| ||||||||||||||| ||| ||| |||||||||
Sbjct 270 GCGGGATGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCGTAGGTTCAAAT 329
Query 92675 CCCACTCCCGC 92685
|| ||||||||
Sbjct 330 CCTACTCCCGC 340
>seq249
Length=9465
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||||| ||||||| |||||||||| ||||||||||||||| |||||| |||||||||
Sbjct 3477 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 3418
Query 92675 CCCACTCCCGCCAC 92688
|| | ||||| ||
Sbjct 3417 CCTGCCCCCGCAAC 3404
>seq191
Length=470810
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||||| ||||||| |||||||||| ||||||||||||||| ||| | | |||||||||
Sbjct 274656 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCATAGGTTCAAAT 274597
Query 92675 CCCACTCCCGCCAC 92688
|| | ||||| ||
Sbjct 274596 CCTATCCCCGCAAC 274583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 526588532862480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |