Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_012742.1 Length=44080 Score E Sequences producing significant alignments: (Bits) Value seq97 334 2e-87 >seq97 Length=479585 Score = 334 bits (370), Expect = 2e-87 Identities = 570/822 (69%), Gaps = 11/822 (1%) Strand=Plus/Minus Query 4735 ACCACTAATGCTGATGGCTCTGCCGGTGCAACTGTGCAGACTACCCGCCTGCCGGGCATC 4794 ||||| || || | || || | || || | || ||||| || ||||| ||||||||| Sbjct 247971 ACCACGAACGCCGCCGGTTCCGTTGGCGCTGCAGTCCAGACCACTCGCCTTCCGGGCATC 247912 Query 4795 CTGGAGCTGCCGCAGCGTCGTATGACTGTTCGTAACCTGTTGGCTCAGGGCACGATGGAC 4854 || || ||||| ||||| ||| | || | ||| ||||| | | |||||| ||||||| Sbjct 247911 CTTGAACTGCCTCAGCGCCGTCTTACGATCCGTGACCTGCTTTCGCAGGGCCAGATGGAC 247852 Query 4855 GGTAATTCGCTGGAATATGTCCGCGAGACCGGTTTCACCAATGCTGCCGCCCCGGTTGCT 4914 || |||||||||||| ||| || | || |||| ||| || || ||||| ||| Sbjct 247851 GGCGGTTCGCTGGAATACGTCAAGGAAAAGGGCTTCAACAACAACGCTGCTCCGGTGGCT 247792 Query 4915 GAAGGTGCCCAGAAGCCGGAATCCAGCCTGCGATTTGACTTGGTGCAGACCAGCGCGAAA 4974 |||||||| ||||| | || | | | ||||| |||| |||| || || Sbjct 247791 GAAGGTGCTGCAAAGCCCGGTTCTGACATCCAGTTTGAACTGGTCACGACCTCTGCCAAG 247732 Query 4975 GTGATCGCCCACTACATGAAGGCATCCCGCCAGATTCTCAGTGACAGCTCCCAGTTGCAG 5034 || ||||| |||| |||||||||||||| ||| | || |||| |||||| | | Sbjct 247731 GTCATCGCACACTGGATGAAGGCATCCCGTCAGGTGCTGTCCGACATTTCCCAGCTTCGT 247672 Query 5035 AGCTTCATCAATGCTCGCTTGCTGCGAGGTCTGGAAGTGGTCGAAGAGGCACAGCTGCTG 5094 ||||| || || ||||| ||||||| ||||||||| ||||| || Sbjct 247671 TCGATCATCGATCAGCGTCTGCTGTACGGTCTGGCCTATGTCGAAGAGAACCAGCTTCTC 247612 Query 5095 AATGGTAATGGCACCGGCCAGAACCTGGCTGGCCTGCTGCCCGCTG-CTACTGCCTTCAC 5153 ||||| |||||||||||||||||||| ||| | | ||||| | | || ||||| | Sbjct 247611 AATGGCGATGGCACCGGCCAGAACCTGCTCGGCATCAT-CCCGCAGGCAACGGCCTTTGC 247553 Query 5154 CG---CGCCTATCAC-----TGTT-GCCAATGCCACGGCGGTTGACCGTCTGCGTCTGGC 5204 | || || ||| || |||| || || | ||||||| || ||| |||| Sbjct 247552 AGTCCCGGCTGGCACGACCATGCCCGCCACTGTGACCGGTATTGACCGCCTTCGTGTGGC 247493 Query 5205 GATCCTGCAGGCTCAGCTGGCTGAGTTCCCGGCGACCGGCATTGTGCTGAACCCGGCGGA 5264 ||| || ||||| |||||||| | ||||| || || || || | |||| || Sbjct 247492 GATGCTTCAGGCCGCTCTGGCTGAATATCCGGCAACGGGTCACGTCCTCAGCCCGATTGA 247433 Query 5265 TTGGGCTGGCATTGAGCTGATTAAGGATACGCAGGGCCGCTACATCTTGGGTAACCCTCA 5324 ||| || || || || | ||||| || |||||||| |||||| | || ||||| || Sbjct 247432 CTGGACTTCGATCGAACTCCTGAAGGACACCCAGGGCCGTTACATCATCGGCAACCCGCA 247373 Query 5325 GGGTGTCTTGGCTCCCACGCTGTGGGGTCTGCCAGTTGTCTCGACTCAGGCCATGGCCGC 5384 ||| | ||||| || || ||||||||||| |||||| |||| |||||||||||||| Sbjct 247372 GGGAACGATTGCTCCGACCCTCTGGGGTCTGCCGGTTGTCACGACCCAGGCCATGGCCGC 247313 Query 5385 AGGTCAGTTCCTCGTTGGCGCGTTTGATGCGGCTGCACAGATTTTCGATCGTTGGGAAGC 5444 ||| |||||||| || || || | || ||| ||||||||||| || ||| | || Sbjct 247312 AGGCAAGTTCCTCACCGGTGCATTCAAGCTGGGTGCGCAGATTTTCGACCGCTGGCAGGC 247253 Query 5445 GCGCGTGGAAGTGGCTACCGAGAATCAGGATGACTTTGTGAAAAACCTTGTCACCGTTCT 5504 ||||| ||||| || |||||||| | || ||||| | || ||||| |||||| | || Sbjct 247252 TCGCGTCGAAGTCGCAACCGAGAACGAAGACGACTTCATCAAGAACCTCGTCACCATCCT 247193 Query 5505 GTGTGAAGAGCGTTTGGCATTGGCCATCTATAGGCCTGAGGC 5546 ||||||||| | || ||||| ||||| | || || || Sbjct 247192 CGCAGAAGAGCGTCTTGCTCTGGCCGTCTATCGTCCAGAAGC 247151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140931891279596