Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq890 91.5 2e-13 seq1318 89.7 6e-13 seq949 82.4 9e-11 >seq890 Length=125401 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 31291 GCGGAGAGGGTGGGATTCGAACCCACGGA-GGCTTTCACC-TCGCTAGTTTTCAAGACTA 31348 ||||| ||||||||||||||||||||| |||| ||||| ||||| ||||||||||| | Sbjct 24467 GCGGAAGCGGTGGGATTCGAACCCACGGACGGCTCTCACCGTCGCTGGTTTTCAAGACCA 24526 Query 31349 GAGCCTTCAACCACTCGACCAC 31370 | ||||| ||||||||| |||| Sbjct 24527 GTGCCTTAAACCACTCGGCCAC 24548 >seq1318 Length=12988 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 32020 GTAGGATTCGAACCTACGACCGACTGCTTAGAAGGCAGTTGCTCTATCCAGCTGAGCTA 32078 ||||||||||||||||||||| || ||||||||||| ||||||||||||| |||||||| Sbjct 1762 GTAGGATTCGAACCTACGACCCACAGCTTAGAAGGCTGTTGCTCTATCCAACTGAGCTA 1820 >seq949 Length=99569 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/72 (86%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 176127 AGGGAG--GGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCCGCCTCCATTA 176184 |||||| ||||||||||| |||||||| ||||| ||||||||||||||| | || ||| Sbjct 1419 AGGGAGTTGGATTTGAACCAACGTAGGCATAGCCAACGGATTTACAGTCCGTCCCCTTTA 1478 Query 176185 ACCACTCGGACA 176196 ||||||||| || Sbjct 1479 ACCACTCGGGCA 1490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622113142936560