Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq422 127 2e-23 seq1424 86.0 5e-11 >seq422 Length=7389 Score = 127 bits (140), Expect = 2e-23 Identities = 152/206 (74%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 518176 ||||||||||| | ||||| | | | || ||||| ||||| ||| || | | Sbjct 5148 GTTCCACCACCTAAGTCAAATACTAAAATTTTGTGATCTTTATCTTG---TTTGTCTAAA 5092 Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| || | ||||||||||||||||| ||||||||||| || || | || ||| Sbjct 5091 CCATAAGCGATGGCAGCAGCAGTTGGTTCGTTAATAATTCTTTCTACTTTTAATCCTGCA 5032 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || ||||||||| |||||| |||| | |||| || |||||| || |||||||||||| Sbjct 5031 ATAATTCCTGCATTTTTAGTAGCTTCACGTTGTTCATTGTTAAAGTAAGCAGGAACAGTA 4972 Query 518297 ATAACGGCATCAGTTACTTCTTTACC 518322 ||||| || | | || || |||||| Sbjct 4971 ATAACTGCTTTTGATATTTTTTTACC 4946 >seq1424 Length=15012 Score = 86.0 bits (94), Expect = 5e-11 Identities = 117/159 (74%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 327860 GAAGACATTAAAAAAGCTTATAGAAAACTGGCTATCAAATATCATCCTGACAAAAATAAA 327919 || || || |||||||| |||| |||||| || | |||||||||||||||| |||| Sbjct 6190 GACGAGATAAAAAAAGCATATAAAAAACTAGCATTAAAATATCATCCTGACAGAAATCCT 6131 Query 327920 GGAAATCCTGAAGCCGAGG-AAATGTTCAAGAAGATTAATCA--TGCCAATAGTATTTTG 327976 || ||| ||||| |||| ||| || |||||| ||| || ||| || || | Sbjct 6130 GGTAATAAGGAAGCAGAGGAAAAATTTAAAGAAG--TAA-CAGCTGCATATGAAGTTCTA 6074 Query 327977 TCTAATTCTGAAAAGAGAAGAGTTTATGATCAATATGGT 328015 ||| | |||||||| ||| || ||||||||| |||||| Sbjct 6073 TCTGACTCTGAAAAAAGAGCAGGTTATGATCATTATGGT 6035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780748014682294